BAC Information

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BAC

Clone NameB6Ng01-005B01
Chromosome16 (Build37)
Map Location 82,121,270 - 82,248,984
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B01.bB6Ng01-005B01.g
ACCDH842307DH842308
length917604
definitionDH842307|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B01, 5' end.DH842308|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,121,270 - 82,122,166)(82,248,380 - 82,248,984)
sequence
gaattcttttctttgtgaaacgtagtcagctgtgcggtggtggcacacac
ctttaattccagcacttggaaggcagaggcaggcagatttccgaattcga
ggccagcctggtctacaaagtgagttccaggacagcccagggctacacag
agaaaccctgtctcagaaaaaaaaaaaaaaaaaaaagaaaagaaaagaaa
gaaagtaagaaaagaaaaaaaagagacctagtccatcagcttcactgata
ataacatctatattttacatactaatggacatttaattttatggtttacc
catctacataaaactataaattttcaacgttcttttaggtcaatattatt
ttaattattatattgcacagaagtttaatgatagttcttcattatgaata
tatgcgtttcttttattgtattgtcaacatctgagattctctttactgtc
tcttgtgttctgtttgtgaagcctgcctctgtagtttccctttcaaaata
caaaatattttatttccagaattccctcagttcatgttttctttactgtt
tccatttcctttttcagttctgaaatttattcatgatttattcatgtgct
tctgggtttttacttgtttttttttaattagttattttctttatttacat
tttaaatgttatcccctttcctgatttcccctctgaaaaccccctatctc
atgccccttccccctgctcaccatcccacctactctctcttctctgtcct
ggcactcccctacactgaggcattgcctcacactgtttgtgttttctgga
tttctttaaggaagttattcatttcctctttaaggacagctatcatttta
tatagctgattttaagttgttttgttttttgctcatctatgttgcatatc
cagggactgctgaggta
gaattccatgtcttgataaaggcagaatagagaagaaataggggttcaga
aataacttccatttgtaatttggttttgagtcttgtaccttgaaattttc
tgaaatttgtataaactgaaatcactattctaatagacattagcaattgt
gtcgtgtctcttgtgttttctgtaaaggatagaaaagttcacaatcactt
cttaccattctgcttaagaagatgaataatattatcaaagtaaagaaaga
gtaatgcttttttaaaattttacttaagtgataattttatttctatactg
aaggtgcttttgttgtacaggattacttttactagataaagcagaagaaa
atcagcacaaacttatgaaattgaatgaatttatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatacatctattagttgcttgcagaaattttctctct
caggagaaacataagggaaaatttaatggggttgaatattttctcatttc
tatttataacaaataatatgacgagaaaatcttgttgtgaaaaatctata
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82121270_82122166
seq2: B6Ng01-005B01.b_45_938

seq1  GAATTCTTTTCTTTGTGAAACGTAGTCAGCTGTGCGGTGGTGGCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTTGTGAAACGTAGTCAGCTGTGCGGTGGTGGCACACAC  50

seq1  CTTTAATTCCAGCACTTGGAAGGCAGAGGCAGGCAGATTTCCGAATTCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCCAGCACTTGGAAGGCAGAGGCAGGCAGATTTCCGAATTCGA  100

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCCAGGGCTACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCCAGGGCTACACAG  150

seq1  AGAAACCCTGTCTCAGAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAGAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAA  200

seq1  GAAAGTAAGAAAAGAAAAAAAAGAGACCTAGTCCATCAGCTTCACTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGAAAAGAAAAAAAAGAGACCTAGTCCATCAGCTTCACTGATA  250

seq1  ATAACATCTATATTTTACATACTAATGGACATTTAATTTTATGGTTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCTATATTTTACATACTAATGGACATTTAATTTTATGGTTTACC  300

seq1  CATCTACATAAAACTATAAATTTTCAACGTTCTTTTAGGTCAATATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATAAAACTATAAATTTTCAACGTTCTTTTAGGTCAATATTATT  350

seq1  TTAATTATTATATTGCACAGAAGTTTAATGATAGTTCTTCATTATGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTATATTGCACAGAAGTTTAATGATAGTTCTTCATTATGAATA  400

seq1  TATGCGTTTCTTTTATTGTATTGTCAACATCTGAGATTCTCTTTACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGTTTCTTTTATTGTATTGTCAACATCTGAGATTCTCTTTACTGTC  450

seq1  TCTTGTGTTCTGTTTGTGAAGCCTGCCTCTGTAGTTTCCCTTTCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTTCTGTTTGTGAAGCCTGCCTCTGTAGTTTCCCTTTCAAAATA  500

seq1  CAAAATATTTTATTTCCAGAATTCCCTCAGTTCATGTTTTCTTTACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTTATTTCCAGAATTCCCTCAGTTCATGTTTTCTTTACTGTT  550

seq1  TCCATTTCCTTTTTCAGTTCTGAAATTTATTCATGATTTATTCATGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCTTTTTCAGTTCTGAAATTTATTCATGATTTATTCATGTGCT  600

seq1  TCTGGGTTTTTACTTGTTTTTTTTTAATTAGTTATTTTCTTTATTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTTTACTTGTTTTTTTTTAATTAGTTATTTTCTTTATTTACAT  650

seq1  TTTAAATGTTATCCCCTTTCCTGATTTCCCCTCTGAAAACCCCCTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTATCCCCTTTCCTGATTTCCCCTCTGAAAACCCCCTATCTC  700

seq1  ATGCCCCTTCCCCCTGCTCACCATCCCACCTACTCTCTCTTCTCTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTTCCCCCTGCTCACCATCCCACCTACTCTCTCTTCTCTGTCCT  750

seq1  GGCACTCCCCTACACTGAGGCATTGCCTCACACTGTTTGTGTTTTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCACTCCCCTACACTGAGGCATTGCCTCACACTGTTTGTG-TTTTCTGG  799

seq1  ATTTCTTTAAGGAAGTTATTCATTTCCTCTTTAAGGACAGCTATCATTTT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTCTTTAAGGAAGTTATTCATTTCCTCTTTAAGGACAGCTATCA-TTT  848

seq1  TATATAGCTGATTTTAAGTTGTTTTGTTTTTTGCTTCATCTATGTTG  897
      |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATATAGCTGATTTTAAGTTGTTTTGTTTTTTGC-TCATCTATGTTG  894

seq1: chr16_82248380_82248984
seq2: B6Ng01-005B01.g_67_670 (reverse)

seq1  ATAATATAGAACTTTTAACAACAAGATTTTCTCGTCATATTATTTGTTAT  50
      ||||||||| | |||| |||||||||||||||||||||||||||||||||
seq2  ATAATATAG-ATTTTTCACAACAAGATTTTCTCGTCATATTATTTGTTAT  49

seq1  AAATAGAAATAAGAAAATATACAAAACCATTAAAATTTCCCTTTTGTTTC  100
      |||||||||| ||||||||| |||  |||||||| |||||||| ||||||
seq2  AAATAGAAATGAGAAAATATTCAACCCCATTAAATTTTCCCTTATGTTTC  99

seq1  TCTTGTGAGAGTAAATTTTTGCAAGCAACTATATGATTTGGCTAGTAAAT  150
      || || ||||| |||||| ||||||||||||   ||| |   || || ||
seq2  TCCTGAGAGAGAAAATTTCTGCAAGCAACTAATAGATGTATATA-TATAT  148

seq1  GTCACTTAT-TAGTTGACTGTA-ATATATATATATATATATATATATATA  198
       | |  ||| ||  |   | || |||||||||||||||||||||||||||
seq2  AT-ATATATATATATATATATATATATATATATATATATATATATATATA  197

seq1  TATATATATATATATATATATATATAAATTCATTCAATTTCATAAGTTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATAAATTCATTCAATTTCATAAGTTTG  247

seq1  TGCTGATTTTCTTCTGCTTTATCTAGTAAAAGTAATCCTGTACAACAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTTCTTCTGCTTTATCTAGTAAAAGTAATCCTGTACAACAAAA  297

seq1  GCACCTTCAGTATAGAAATAAAATTATCACTTAAGTAAAATTTTAAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCAGTATAGAAATAAAATTATCACTTAAGTAAAATTTTAAAAAA  347

seq1  GCATTACTCTTTCTTTACTTTGATAATATTATTCATCTTCTTAAGCAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTCTTTCTTTACTTTGATAATATTATTCATCTTCTTAAGCAGAA  397

seq1  TGGTAAGAAGTGATTGTGAACTTTTCTATCCTTTACAGAAAACACAAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAAGTGATTGTGAACTTTTCTATCCTTTACAGAAAACACAAGAG  447

seq1  ACACGACACAATTGCTAATGTCTATTAGAATAGTGATTTCAGTTTATACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACACAATTGCTAATGTCTATTAGAATAGTGATTTCAGTTTATACA  497

seq1  AATTTCAGAAAATTTCAAGGTACAAGACTCAAAACCAAATTACAAATGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAAAATTTCAAGGTACAAGACTCAAAACCAAATTACAAATGGA  547

seq1  AGTTATTTCTGAACCCCTATTTCTTCTCTATTCTGCCTTTATCAAGACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTGAACCCCTATTTCTTCTCTATTCTGCCTTTATCAAGACAT  597

seq1  GGAATTC  605
      |||||||
seq2  GGAATTC  604