BAC Information

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BAC

Clone NameB6Ng01-006C22
Chromosome16 (Build37)
Map Location 92,544,896 - 92,701,798
singlet/doubletdoublet
Overlap geneRunx1
Upstream geneIfngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C22.bB6Ng01-006C22.g
ACCDH843114DH843115
length717815
definitionDH843114|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C22, 5' end.DH843115|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,544,896 - 92,545,612)(92,700,982 - 92,701,798)
sequence
gaattcatcctattggttcctggaaacccaccccaaatcctgttttgttt
tatttttttttttctttctggtgtgctaagtgaccgtgggaagcggcatt
ctgctcagtcctgtaattatttgctttgtcatggaagtgccaggaacaag
aagcccctgattatgcctgacaccaacataagtagggagtcgggataaag
tcagatgtattgatgatttcttgtttgtcgacagatttagggacatttaa
atcaatcttagggactcagaggtccagttccaggtccttgggcatccaat
ataagacctcagtgtccccaccatctccccaccatgtgcagtctctcatg
gtacaagggatggcccaagaatgtttgcactcggccccctccctcctcaa
tatctcatgtagccgggaactgggatcaccgtctaccattggctgaaccc
cctctaacattatgcctagtttaacttggacttctgtatcatcctgggtt
ctagcatcatatggtgtagtcatgaagaacattgctggggggtgggggtg
gggctgcacagaggagaaaggtggctgtggttccttatgggtacacacgc
ggggtacacgcgtgtgagtgcgtaggcatgcttccatgcacgtgggcatg
caagcacgtgtacactcacccattctgtatgtgcaaacataggcacatgc
acacatcaagtgtatct
gaattcagtagagaatctgttttttttttttttttaagctggcaagtaat
ggaattattatgaaaattttagctttctgtttattcacgggcttattttt
attttctattattttggagtgcatacataaagtgaatcctagagaggctc
atggtgtgttagagtccaatttatattttaatgaagtatatattcatata
cacatatatgtatggttgtctattgatgtgtttctatatatactttatga
tatcattttgccaaataattaaagcttttttgctgattcaaatatactta
aaaggagcaatccatattgtagctgtcataccacataaaataccccaatg
aaatcttaaatgataccttcagctctatggcgttcaccattcacacattc
tgctgttattaaatgactgtgtgactctctgaaaaaaatgtggcttggct
tccgtcaactatgacagagtttattacacttgtcagagcaacggtgacgc
aaaattttatgaggacaaaatgtttactaagcaccacgaattttgtggga
aagggagaaatattttcaatttgctccttgtaagttatacaggggttggg
ggggaaaggtatgaagctagaattgagtgtccccccagcacagcatagaa
atatttcagagaggaaagatactgtgcaagaattgaggagtttggtccta
acaatagtaaacaattgtgaaaaggtgacataatcgtgcaggttcttcac
ctgagaaaaaatgtaagttccatgtcgagagccagacagcgtggacagct
tctcgcttagtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92544896_92545612
seq2: B6Ng01-006C22.b_44_760

seq1  GAATTCATCCTATTGGTTCCTGGAAACCCACCCCAAATCCTGTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTATTGGTTCCTGGAAACCCACCCCAAATCCTGTTTTGTTT  50

seq1  TATTTTTTTTTTTCTTTCTGGTGTGCTAAGTGACCGTGGGAAGCGGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTTTCTTTCTGGTGTGCTAAGTGACCGTGGGAAGCGGCATT  100

seq1  CTGCTCAGTCCTGTAATTATTTGCTTTGTCATGGAAGTGCCAGGAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTCCTGTAATTATTTGCTTTGTCATGGAAGTGCCAGGAACAAG  150

seq1  AAGCCCCTGATTATGCCTGACACCAACATAAGTAGGGAGTCGGGATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGATTATGCCTGACACCAACATAAGTAGGGAGTCGGGATAAAG  200

seq1  TCAGATGTATTGATGATTTCTTGTTTGTCGACAGATTTAGGGACATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTATTGATGATTTCTTGTTTGTCGACAGATTTAGGGACATTTAA  250

seq1  ATCAATCTTAGGGACTCAGAGGTCCAGTTCCAGGTCCTTGGGCATCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTTAGGGACTCAGAGGTCCAGTTCCAGGTCCTTGGGCATCCAAT  300

seq1  ATAAGACCTCAGTGTCCCCACCATCTCCCCACCATGTGCAGTCTCTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCTCAGTGTCCCCACCATCTCCCCACCATGTGCAGTCTCTCATG  350

seq1  GTACAAGGGATGGCCCAAGAATGTTTGCACTCGGCCCCCTCCCTCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGGATGGCCCAAGAATGTTTGCACTCGGCCCCCTCCCTCCTCAA  400

seq1  TATCTCATGTAGCCGGGAACTGGGATCACCGTCTACCATTGGCTGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATGTAGCCGGGAACTGGGATCACCGTCTACCATTGGCTGAACCC  450

seq1  CCTCTAACATTATGCCTAGTTTAACTTGGACTTCTGTATCATCCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACATTATGCCTAGTTTAACTTGGACTTCTGTATCATCCTGGGTT  500

seq1  CTAGCATCATATGGTGTAGTCATGAAGAACATTGCTGGGGGGTGGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCATATGGTGTAGTCATGAAGAACATTGCTGGGGGGTGGGGGTG  550

seq1  GGGCTGCACAGAGGAGAAAGGTGGCTGTGGTTCCTTATGGGTACACACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCACAGAGGAGAAAGGTGGCTGTGGTTCCTTATGGGTACACACGC  600

seq1  GGGGTACACGCGTGTGAGTGCGTAGGCATGCTTCCATGCACGTGGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACACGCGTGTGAGTGCGTAGGCATGCTTCCATGCACGTGGGCATG  650

seq1  CGAGCACGTGTACACTCACCCA-TCTGCATGTGCAAACATAGGCACATGC  699
      | |||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CAAGCACGTGTACACTCACCCATTCTGTATGTGCAAACATAGGCACATGC  700

seq1  ACACACACAAGTGTATCT  717
      |||||  |||||||||||
seq2  ACACA-TCAAGTGTATCT  717

seq1: chr16_92700982_92701798
seq2: B6Ng01-006C22.g_65_879 (reverse)

seq1  CACTACATAAGCGAGCAGCTGTCCACGCTGTCTGGCTCTCGACATTGGAA  50
      |||||| |||||||| |||||||||||||||||||||||||||| |||||
seq2  CACTAC-TAAGCGAGAAGCTGTCCACGCTGTCTGGCTCTCGACA-TGGAA  48

seq1  CTTACATTTTTCTCTCAGGTGAAGAACCTGCACGATTATGTCA-CTTTTC  99
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTTACATTTTT-TCTCAGGTGAAGAACCTGCACGATTATGTCACCTTTTC  97

seq1  ACATTTGTTTACTATTGTTTAGGACCAAACTCCTCAATTCTTGCACCGTA  149
      ||| ||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ACAATTGTTTACTATTG-TTAGGACCAAACTCCTCAATTCTTGCACAGTA  146

seq1  TCCTTCCTCTCTG-AATATTTCTATGCTGTGCTGGGGGGACACTCAATTC  198
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCTCTGAAATATTTCTATGCTGTGCTGGGGGGACACTCAATTC  196

seq1  TAGCTTCATACCTTTCCCCCCCAACCCCTGTATAACTTACAAGGAGCAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCATACCTTTCCCCCCCAACCCCTGTATAACTTACAAGGAGCAAA  246

seq1  TTGAAAATATTTCTCCCTTTCCCACAAAATTCGTGGTGCTTAGTAAACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATTTCTCCCTTTCCCACAAAATTCGTGGTGCTTAGTAAACAT  296

seq1  TTTGTCCTCATAAAATTTTGCGTCACCGTTGCTCTGACAAGTGTAATAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTCATAAAATTTTGCGTCACCGTTGCTCTGACAAGTGTAATAAA  346

seq1  CTCTGTCATAGTTGACGGAAGCCAAGCCACATTTTTTTCAGAGAGTCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATAGTTGACGGAAGCCAAGCCACATTTTTTTCAGAGAGTCACA  396

seq1  CAGTCATTTAATAACAGCAGAATGTGTGAATGGTGAACGCCATAGAGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTAATAACAGCAGAATGTGTGAATGGTGAACGCCATAGAGCTG  446

seq1  AAGGTATCATTTAAGATTTCATTGGGGTATTTTATGTGGTATGACAGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATCATTTAAGATTTCATTGGGGTATTTTATGTGGTATGACAGCTA  496

seq1  CAATATGGATTGCTCCTTTTAAGTATATTTGAATCAGCAAAAAAGCTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGATTGCTCCTTTTAAGTATATTTGAATCAGCAAAAAAGCTTTA  546

seq1  ATTATTTGGCAAAATGATATCATAAAGTATATATAGAAACACATCAATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGGCAAAATGATATCATAAAGTATATATAGAAACACATCAATAG  596

seq1  ACAACCATACATATATGTGTATATGAATATATACTTCATTAAAATATAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATACATATATGTGTATATGAATATATACTTCATTAAAATATAAA  646

seq1  TTGGACTCTAACACACCATGAGCCTCTCTAGGATTCACTTTATGTATGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTCTAACACACCATGAGCCTCTCTAGGATTCACTTTATGTATGCA  696

seq1  CTCCAAAATAATAGAAAATAAAAATAAGCCCGTGAATAAACAGAAAGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAATAATAGAAAATAAAAATAAGCCCGTGAATAAACAGAAAGCTA  746

seq1  AAATTTTCATAATAATTCCATTACTTGCCAGCTTAAAAAAAAAAAAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCATAATAATTCCATTACTTGCCAGCTTAAAAAAAAAAAAAAAA  796

seq1  CAGATTCTCTACTGAATTC  817
      |||||||||||||||||||
seq2  CAGATTCTCTACTGAATTC  815