BAC Information

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BAC

Clone NameB6Ng01-009G09
Chromosome16 (Build37)
Map Location 63,789,060 - 63,790,138
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneArl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009G09.bB6Ng01-009G09.g
ACCDH845350DH845351
length1,0681,174
definitionDH845350|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G09, 5' end.DH845351|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttggctcacagttttagagtatcaattacatggtagggaagc
tgtatggtttgggcctgcacagagacccaactcacatttcaatgggagta
catagcagcacaaactcatacattgtgtgatcagtgtgtgaaagggcaga
ggacaattttaaagagaactgggtaaaaaagaaacaattcatcgtgttca
gatatgtccagacaaatgcaacaatttttatttatgggtatcttctagta
agaggtagggagataagtgcacgatgacctttttcaatggaaattgtaag
tcaagaaatgcaatgagcttcaggttatgccccacatgatgatgaaactg
cttcaggtgtagacagacccctgactatttctggatgggacgtgtctgag
ggtccaaggttccagacaatgggatagccattttcagctcaaatatatga
ttgaaactatgcttttaaatatgaataaccaagggtaaaatttgtttcct
aacattaaatctgggtggaaaatgacgaatcaccaaagaagacacattgt
agtaaagcatagagtgtaatgcagacagtattttgcctttttactatttc
atttaaaagataaatacaagcagaacactcacagtaattctctgaaaaga
atggttgagaggaaaaaatctgctaaataaatcaagaattatttttagga
gtgaaaggaagtgaaacaggtattaagaaatgaaaacttcaatgaaacat
gttgaaaacatgttttctaaagaagcttggctcagttggaggacactctt
ggttcctttgttgcgttggcagagagaggggtaggttgccttttcaaaca
ggctcttcctttgaagcctgcctgacatggaacacactatttagatcaga
atagccttgaccataaaaggctctttctgactctacctgcgctggaatgt
caggataaacccttgtcactatgctacctttagttttaagatatatgact
aagacgggagcatgacactacagcttaaagtagaaaacaaacggagattt
cactttagtcacctccta
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaacacaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcagattttattgaaag
acccagatgtagctgtctcttgtgagaatttgccgggcctagcaacacag
aagtggatgctcacagtcagctaatggatggatcatagggctccaatgaa
gagctagagaagtagccaggagctaaaaggatctcaaccttataggttga
cacattatgaactaaccagtacctcggagctcttgactctagctgcatat
tatcaaagatggcctagtccgctcatggaagaagccctttgacttgcatc
ttatagctccgagcatggtacaccaaggtccaaaagtgaagtcgtcgcat
gctgtagattgtgtgtgtcgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63789060_63790138
seq2: B6Ng01-009G09.b_49_1116

seq1  GAATTCATTTGGCTCACAGTTTTAGAGCATCTATTACATGGTAGGGAAGC  50
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GAATTCATTTGGCTCACAGTTTTAGAGTATCAATTACATGGTAGGGAAGC  50

seq1  TGTATGGTTTGGGCCTGCAGAGAGACCCAACTCACATTTCAATGGGAGTA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTATGGTTTGGGCCTGCACAGAGACCCAACTCACATTTCAATGGGAGTA  100

seq1  CATAGCAGCACAAACTCATACATTGTGTGATCAGTGTGTGAAAGGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGCACAAACTCATACATTGTGTGATCAGTGTGTGAAAGGGCAGA  150

seq1  GGACAATTTTAAAGAGAACTGGGTAAAAAAGAAACAATTCATCGTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTTTAAAGAGAACTGGGTAAAAAAGAAACAATTCATCGTGTTCA  200

seq1  GATATGTCCAGACAAATGCAACAATTTTTATTTATGGGTATCTTCTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTCCAGACAAATGCAACAATTTTTATTTATGGGTATCTTCTAGTA  250

seq1  AGAGGTAGGGAGATAAGTGCACGATGACCTTTTTCAATGGAAATTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGGGAGATAAGTGCACGATGACCTTTTTCAATGGAAATTGTAAG  300

seq1  TCAAGAAATGCAATGAGCTTCAGGTTATGCCCCACATGATGATGAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATGCAATGAGCTTCAGGTTATGCCCCACATGATGATGAAACTG  350

seq1  CTTCAGGTGTAGACAGACCCCTGACTATTTCTGGATGGGACGTGTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTGTAGACAGACCCCTGACTATTTCTGGATGGGACGTGTCTGAG  400

seq1  GGTCCAAGGTTCCAGACAATGGGATAGCCATTTTCAGCTCAAATATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGGTTCCAGACAATGGGATAGCCATTTTCAGCTCAAATATATGA  450

seq1  TTGAAACTATGCTTTTAAATATGAATAACCAAGGGTAAAATTTGTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTATGCTTTTAAATATGAATAACCAAGGGTAAAATTTGTTTCCT  500

seq1  AACATTAAATCTGGGTGGAAAATGACGAATCACCAAAGAAGACACATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAATCTGGGTGGAAAATGACGAATCACCAAAGAAGACACATTGT  550

seq1  AGTAAAGCATAGAGTGTAATGCAGACAGTATTTTGCCTTTTTACTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCATAGAGTGTAATGCAGACAGTATTTTGCCTTTTTACTATTTC  600

seq1  ATTTAAAAGATAAATACAAGCAGAACACTCACAGTAATTCTCTGAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGATAAATACAAGCAGAACACTCACAGTAATTCTCTGAAAAGA  650

seq1  ATGGTTGAGAGGAAAAAATCTGCTAAATAAATCAAGAATCATTTTTAGGA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGTTGAGAGGAAAAAATCTGCTAAATAAATCAAGAATTATTTTTAGGA  700

seq1  GTGAAAGGAAGTGAAACAGGTATTAAGAAATGAAAACTTCAATGAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGAAGTGAAACAGGTATTAAGAAATGAAAACTTCAATGAAACAT  750

seq1  GTTGAAAACATGTTTTCTAAAGAAGCTTGGCTCAGTTGGAGGACACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAACATGTTTTCTAAAGAAGCTTGGCTCAGTTGGAGGACACTCTT  800

seq1  GGTTCCTTTGTTGCGTTGGCAGAGAGAGGGGTAGGTTGCC-TTTCAAACA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTTCCTTTGTTGCGTTGGCAGAGAGAGGGGTAGGTTGCCTTTTCAAACA  850

seq1  GGCTCTTCCTTTGAAGCCTGCCTGACATGGAACACACTATTTAGATCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCCTTTGAAGCCTGCCTGACATGGAACACACTATTTAGATCAGA  900

seq1  ATAGCCTTGACCATAAAAGGGCTCTTCCTGACTCTACCTGCGCTGGAATG  949
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ATAGCCTTGACCATAAAA-GGCTCTTTCTGACTCTACCTGCGCTGGAATG  949

seq1  TCAGGCATAAACACCTGTCACTATTGCTACCTTTAGTTTTCAAGACTATA  999
      ||||| |||||| | |||||||| |||||||||||||||| |||| ||||
seq2  TCAGG-ATAAACCCTTGTCACTA-TGCTACCTTTAGTTTT-AAGA-TATA  995

seq1  TTGACTAAGACGTGAGCATTGACACTACAGCTTAAAAGTTAGAAAACAAA  1049
       ||||||||||| ||||| |||||||||||||||||   |||||||||||
seq2  -TGACTAAGACGGGAGCA-TGACACTACAGCTTAAA--GTAGAAAACAAA  1041

seq1  CGGAAGATTTTCACTTTATGTCAGCTCCTA  1079
      ||| ||| |||||||||| |||| ||||||
seq2  CGG-AGA-TTTCACTTTA-GTCACCTCCTA  1068