BAC Information

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BAC

Clone NameB6Ng01-010P09
Chromosome19 (Build37)16 (Build37)
Map Location 8,166,248 - 8,166,53139,983,540 - 39,984,519
singlet/doubletsingletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P09.bB6Ng01-010P09.g
ACCDH846480DH846481
length348984
definitionDH846480|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P09, 5' end.DH846481|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,166,248 - 8,166,531)(39,983,540 - 39,984,519)
sequence
agaaaggctcagactgaagcagttgaatgcataatgacaaaatatatctg
agcagatgcttgctcagatgtacccaggaagacacaaggcctgtcttttg
atagttcagtaacatagactcttgagcccattgtcctgctgcatgcctgc
cacctgtttaaagtatcgcacagctccaaactttgtctctgtaactcctt
ccatgggtgttttgttctcagttctaagaaggggtaaagtgtccacactt
tggtctttgttcttcttgagtttcatgtgttttgcaaattgtatcttata
tcttggatattctaagtttctgggctaatatccacttatcagtgagta
gaattcaacgggtacaatgtgctactagtgtcaaggtcagaaatatggca
gagacattacctgcagatctgaaagaaaccacagacaccatgatcacata
attcaaatattaaattgcatcactgaataaaatgaaatagttttgttagg
gtctccatccagcaaaattcccaggaagagatggaaaatccacctttgct
gcatccttgtgacttagaggagttctgactggcctctgctctcactagca
tgtgttcctgagtcattcattgagttggacatgtttggtaccccgctgag
aatttttctctgaatgtttagaagaaggtaggatgggtaggtttttcatg
ttggagttttctctctaaataacttcaaactagaggtgttaaagcaagaa
ggcagatgatgtaaacaagagaggccaagaagctgagctatgatagatag
ggtcagccatgtcaaaactggtttgacctagtgcttcaaaaccatacata
aaggattgggaatgctgtgtaatgtggaatggcattggataggatgaggc
ttcagatggccactagaatctcaaggtggaggtcactgtgacatttggag
gaggctttcaagcaatccttggctaagaagggagaggccagagagaaagg
gaaccacgggataagaagatgaacagtgagttccaagatttttctcccgc
gaagggggaaagtcaaatgtatgttgcgacaaggtcaaatcaaggtctta
agaagacaagggcttttcacctatgtttgctgagatgaaaggggactttg
gctgcattggaccgacctctcacacacaagcaaacccagggccgcggcgc
tgccaggctgtgcgcactagatggcagtagcggggccctttcggctgggc
tccgggtcctataaggcgcttgcttgtttaagtacagtcttcattagtgg
gagctgcaggggagtaagggagaaaggaagggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8166248_8166531
seq2: B6Ng01-010P09.b_223_400 (reverse)

seq1  TACTCACTGATAAGTGGATATTAGCCCTGAATCTTAGGATATCCAAGATA  50
      ||||||||||||||||||||||||||| ||| ||||| ||||||||||||
seq2  TACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATATCCAAGATA  50

seq1  TAAGATATAATTTGCTAAACACATTTAACTCAAG-AGAAC-AAGACCAAA  98
      ||||||| ||||||| ||||||||  |||||||| ||||| |||||||||
seq2  TAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACAAAGACCAAA  100

seq1  GTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACACCCATGGAA  148
      ||||||||||||| |||||||||||||  |  ||||||||||||||||||
seq2  GTGTGGACACTTTACCCCTTCTTAGAACTGAGAACAAAACACCCATGGAA  150

seq1  GGAGTTACAGAGACAAAATTTGGAAGTGAATCCATGAAACTCAAGAAGGA  198
      ||||||||||||||||| ||||||  ||                      
seq2  GGAGTTACAGAGACAAAGTTTGGAGCTG----------------------  178

seq1  AGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAACAAGACAT  248
                                                        
seq2  --------------------------------------------------  178

seq1  CCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  284
                                          
seq2  ------------------------------------  178

seq1: chr16_39983540_39984519
seq2: B6Ng01-010P09.g_65_1048

seq1  GAATTCAACGGGTACAATGTGCTACTAGTGTCAAGGTCAGAAATATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGGGTACAATGTGCTACTAGTGTCAAGGTCAGAAATATGGCA  50

seq1  GAGACATTACCTGCAGATCTGAAAGAAACCACAGACACCATGATCACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTACCTGCAGATCTGAAAGAAACCACAGACACCATGATCACATA  100

seq1  ATTCAAATATTAAATTGCATCACTGAATAAAATGAAATAGTTTTGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATATTAAATTGCATCACTGAATAAAATGAAATAGTTTTGTTAGG  150

seq1  GTCTCCATCCAGCAAAATTCCCAGGAAGAGATGGAAAATCCACCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCCAGCAAAATTCCCAGGAAGAGATGGAAAATCCACCTTTGCT  200

seq1  GCATCCTTGTGACTTAGAGGAGTTCTGACTGGCCTCTGCTCTCACTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGTGACTTAGAGGAGTTCTGACTGGCCTCTGCTCTCACTAGCA  250

seq1  TGTGTTCCTGAGTCATTCATTGAGTTGGACATGTTTGGTACCCCGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTGAGTCATTCATTGAGTTGGACATGTTTGGTACCCCGCTGAG  300

seq1  AATTTTTCTCTGAATGTTTAGAAGAAGGTAGGATGGGTAGGTTTTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTCTGAATGTTTAGAAGAAGGTAGGATGGGTAGGTTTTTCATG  350

seq1  TTGGAGTTTTCTCTCTAAATAACTTCAAACTAGAGGTGTTAAAGCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTTCTCTCTAAATAACTTCAAACTAGAGGTGTTAAAGCAAGAA  400

seq1  GGCAGATGATGTAAACAAGAGAGGCCAAGAAGCTGAGCTATGATAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGATGTAAACAAGAGAGGCCAAGAAGCTGAGCTATGATAGATAG  450

seq1  GGTCAGCCATGTCAAAACTGGTTTGACCTAGTGCTTCAAAACCATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCATGTCAAAACTGGTTTGACCTAGTGCTTCAAAACCATACATA  500

seq1  AAGGATTGGGAATGCTGTGTAATGTGGAATGGCATTGGATAGGATGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGGAATGCTGTGTAATGTGGAATGGCATTGGATAGGATGAGGC  550

seq1  TTCAGATGGCCACTAGAATCTCAAGGTGGAGGTCACTGTGACATTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGCCACTAGAATCTCAAGGTGGAGGTCACTGTGACATTTGGAG  600

seq1  GAGGCTTTCAAGCAATCCTTGGCTAAGAAGGGAGAGGCCAGAGAGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCAAGCAATCCTTGGCTAAGAAGGGAGAGGCCAGAGAGAAAGG  650

seq1  GAACCACGGGATAAGAAGATGAACAGTGAGTTCCAAGATTTTTCTCCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACGGGATAAGAAGATGAACAGTGAGTTCCAAGATTTTTCTCCCGC  700

seq1  GAA-GGGGAAAGTCAAATGTATGTTGCGACAAGGTCAAATCAAGGTCTTA  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGAAAGTCAAATGTATGTTGCGACAAGGTCAAATCAAGGTCTTA  750

seq1  AGAAGACAAGGGCTTTTCACCTATGTTTGCTGAGATGAAAGGGGACTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAGGGCTTTTCACCTATGTTTGCTGAGATGAAAGGGGACTTTG  800

seq1  GCTGCATTGGACCGACCTCTCACACACAAGCAAACCCAGGGCCGCGGCGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTGGACCGACCTCTCACACACAAGCAAACCCAGGGCCGCGGCGC  850

seq1  TGCCAGGCTGTGCGCACTAGATGGCAGTAGCGGGGCCCTTTCGGCTGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCTGTGCGCACTAGATGGCAGTAGCGGGGCCCTTTCGGCTGGGC  900

seq1  TCCGGGTCCTATAAGGCGCTTGCTTGTTTAAGTACAGTCTCATTTAGTTG  949
      ||||||||||||||||||||||||||||||||||||||||   ||||| |
seq2  TCCGGGTCCTATAAGGCGCTTGCTTGTTTAAGTACAGTCTTCATTAGTGG  950

seq1  GAGCTGCAGGGGAGTAAGGGAGA---GGAGGGTA  980
      |||||||||||||||||||||||   | ||||||
seq2  GAGCTGCAGGGGAGTAAGGGAGAAAGGAAGGGTA  984