BAC Information

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BAC

Clone NameB6Ng01-011O18
Chromosome16 (Build37)1 (Build37)
Map Location 13,651,066 - 13,651,81838,016,482 - 38,016,951
singlet/doubletsingletsinglet
Overlap geneParn
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneLOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O18.bB6Ng01-011O18.g
ACCDH847169DH847170
length975464
definitionDH847169|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O18, 5' end.DH847170|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,651,066 - 13,651,818)(38,016,482 - 38,016,951)
sequence
gaattcaagtggacccctggtgcatgaaagttcagtgactatcagagcgg
gccgaaaagcaatgtgttacacttgtgactgagaaaaccagtaattctga
atcttactaaagctccaaccctttaatatagctcctcatgtagtggtgac
ctcacaaccataaaattattttcattgctacttcatgactgtaattatgg
tactgttatgtgtgggaagtgggggttatggggtacttctaaatgcctgc
tttgtaactgaagtggtaacagtctctgtagacttaagagaagggttggg
ggatgctgggcttcagtttgccttagtgtttgcagcagccaaagaggaga
gagacatagcacagagaaagatgtaaggataagacaagagaggaggctgg
acaagacagcccagagccctcccctgtctggtttaaaagttattcccttc
cggaaattgggaggcagaggcaggccgatctctgtgagttcgaggccagc
ctggtctatgaagcagcttccaggacagccaggactacacaaagaaaccc
tgtctcaaaagaaaacaaaaaaatagaatgaaaattattcacgtacacat
cacttgtcagattttttttttaagtttttttttgttttgttttgtttagt
gtgaaagagtgagagaggaagacatagagaacagaggaagttacgtgttt
taagacatctaccaatggtaacagaaaattaattaaatgagtagtcaatt
taagaactgccaggggacatgatagcgtcacatgacccataactgaaaaa
ctctaaagagcaatgggaccaaagattatactaatttattaagttctgtc
ctagagatcactttttttttcaaatggttttaagttttattgtagaatgg
catgaaagaaaaaagagaacgttaaaagatagagagaggtctagcccatg
gctacatggaaggggaaaaggaagg
tctggccccagctacaaagacagcacaccatcaacaccaagggcatgctg
gcgtcctagaaatgtgtctctggtcagtagccagcttgttgcctggcaac
agctccacagaaatgatgcccgtccctatccccaggtttgctctgttctt
agccagttcttttgtgtatagccttcctttcaaagatctaatttacacta
aaaaacatctgtccctagacaaagggaggaacccagatgcccagtgtgtg
gaggtcgatatggcaaagaaaatgtagctgggcttagtgacccgtactgt
agttccagctactgggaagggggaggcaggagtatagcttgagcccagat
gttcaagggcagtctgggcagcatagtgaggccctacctcagaagtgaat
gaaagagagagggaagagaggagaggaagagagagaagaggaagagagag
gagaggagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_13651066_13651818
seq2: B6Ng01-011O18.b_277_1018

seq1  TACTTCTAAATGCCTGCTTTGTAACTGAAGTGGTAACAGTCTCTGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAAATGCCTGCTTTGTAACTGAAGTGGTAACAGTCTCTGTAGAC  50

seq1  TTAAGAGAAGGGTTGGGGGATGCTGGGCTTCAGTTTGCCTTAGTGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAAGGGTTGGGGGATGCTGGGCTTCAGTTTGCCTTAGTGTTTGC  100

seq1  AGCAGCCAAAGAGGAGAGAGACATAGCACAGAGAAAGATGTAAGGATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAAAGAGGAGAGAGACATAGCACAGAGAAAGATGTAAGGATAAG  150

seq1  ACAAGAGAGGAGGCTGGACAAGACAGCCCAGAGCCCTCCCCTGTCTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGGAGGCTGGACAAGACAGCCCAGAGCCCTCCCCTGTCTGGTT  200

seq1  TAAAAGTTATTCCCTTCCGGAAATTGGGAGGCAGAGGCAGGCCGATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTATTCCCTTCCGGAAATTGGGAGGCAGAGGCAGGCCGATCTCT  250

seq1  GTGAGTTCGAGGCCAGCCTGGTCTATGAAGCAGCTTCCAGGACAGCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCGAGGCCAGCCTGGTCTATGAAGCAGCTTCCAGGACAGCCAGG  300

seq1  ACTACACAAAGAAACCCTGTCTCAAAAGAAAACAAAAAAATAGAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAAAGAAACCCTGTCTCAAAAGAAAACAAAAAAATAGAATGAAA  350

seq1  ATTATTCACGTACACATCACTTGTCAGATTTTTTTTTTAAGTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACGTACACATCACTTGTCAGATTTTTTTTTTAAGTTTTTTTTT  400

seq1  GTTTTGTTTTGTTTAGTGTGAAAGAGTGAGAGAGGAAGACATAGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTAGTGTGAAAGAGTGAGAGAGGAAGACATAGAGAACA  450

seq1  GAGGAAGTTACGTGTTTTAAGACATCTACCAAATGGTAACAGAAAATTAA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGAAGTTACGTGTTTTAAGACATCTACC-AATGGTAACAGAAAATTAA  499

seq1  TTAAATGAGTAGTCAATTTAAGAACTGCCAGGGGACATGATAGCGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGTAGTCAATTTAAGAACTGCCAGGGGACATGATAGCGTCACA  549

seq1  TGACCCATAACTGAAAAACTCTAAAGAGCAATGGGACCAAAGATTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGACCCATAACTGAAAAACTCTAAAGAGCAATGGGACCAAAGATTATAC-  598

seq1  TAATTTATTAAGTTCTGTCCTAGAGAGCAC-TTTTTTTTCAAATGGTTTT  649
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TAATTTATTAAGTTCTGTCCTAGAGATCACTTTTTTTTTCAAATGGTTTT  648

seq1  AAAGTTTTATTGTAGAAAGGCA-GAAAG-AAAAAGAGAAGGTAAAAAGAT  697
       |||||||||||||||| |||| ||||| |||||||||| || |||||||
seq2  -AAGTTTTATTGTAGAATGGCATGAAAGAAAAAAGAGAACGTTAAAAGAT  697

seq1  AGAGAGAGG-CCAG-CCATGGCCACATGGAGGGGGAAGAGGGAGAGAGAG  745
      ||||||||| | || ||||||| ||||||| ||||||             
seq2  AGAGAGAGGTCTAGCCCATGGCTACATGGAAGGGGAA-------------  734

seq1  AAGGAAGG  753
      ||||||||
seq2  AAGGAAGG  742

seq1: chr1_38016482_38016951
seq2: B6Ng01-011O18.g_70_539

seq1  GAATTCTCTGGCCCCAGCTACAAAGACAGCACACCATCAACACCAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCCCCAGCTACAAAGACAGCACACCATCAACACCAAGGGC  50

seq1  ATGCTGGCGTCCTAGAAATGTGTCTCTGGTCAGTAGCCAGCTTGTTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCGTCCTAGAAATGTGTCTCTGGTCAGTAGCCAGCTTGTTGCCT  100

seq1  GGCAACAGCTCCACAGAAATGATGCCCGTCCCTATCCCCAGGTTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGCTCCACAGAAATGATGCCCGTCCCTATCCCCAGGTTTGCTCT  150

seq1  GTTCTTAGCCAGTTCTTTTGTGTATAGCCTTCCTTTCAAAGATCTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGCCAGTTCTTTTGTGTATAGCCTTCCTTTCAAAGATCTAATTT  200

seq1  ACACTAAAAAACATCTGTCCCTAGACAAAGGGAGGAACCCAGATGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAAAACATCTGTCCCTAGACAAAGGGAGGAACCCAGATGCCCAG  250

seq1  TGTGTGGAGGTCGATATGGCAAAGAAAATGTAGCTGGGCTTAGTGACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAGGTCGATATGGCAAAGAAAATGTAGCTGGGCTTAGTGACCCG  300

seq1  TACTGTAGTTCCAGCTACTGGGAAGGGGGAGGCAGGAGTATAGCTTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTCCAGCTACTGGGAAGGGGGAGGCAGGAGTATAGCTTGAGC  350

seq1  CCAGATGTTCAAGGGCAGTCTGGGCAGCATAGTGAGGCCCTACCTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTCAAGGGCAGTCTGGGCAGCATAGTGAGGCCCTACCTCAGAA  400

seq1  GTGAATGAAAGAGAGAGGGAAGAGAGGAGAGGAAGAGAGAGAAGAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAAAGAGAGAGGGAAGAGAGGAGAGGAAGAGAGAGAAGAGGAAG  450

seq1  AGAGAGGAGAGGAGAGGAGA  470
      ||||||||||||||||||||
seq2  AGAGAGGAGAGGAGAGGAGA  470