BAC Information

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BAC

Clone NameB6Ng01-012B05
Chromosome16 (Build37)
Map Location 91,860,897 - 92,003,527
singlet/doubletdoublet
Overlap geneItsn1, Atp5o
Upstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B05.bB6Ng01-012B05.g
ACCDH847265DH847266
length1,107405
definitionDH847265|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B05, 5' end.DH847266|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,860,897 - 91,862,002)(92,003,117 - 92,003,527)
sequence
gaattcagccacacactgtttctggaacactcagttgttgggaaaaaata
tggattgcttctgtgtttgtgcttccagcatggagagaggaaaggtggtg
ctcggactgtgaaatagggtgggaactccatgcaggaactgaagggggag
gggagcctcccgatgccggtgcagttcttaaggagagttctagtacaaac
gtagtgaaatgccgatgtatttaatgtattctgtctgggcggcagactca
gatgtctgtggtatctctacactgtagtgtaggaagtatttcctggctcg
acgtgtggatataaagtgagggtgaggcgagcacagtgctcctggcctgg
agccttctcttctgttggatcctccagctccagggtgtgcctgagccccc
agcaacccagttgtcacgtgcttccacgtctctcctgaatgaagggggat
tttagggctccggtgggtttgtgtcattaatcattttaagtttcatgatg
aactcttcagcttgccaatgagaccttctgctctgttttaagggctctgg
aactgctgggaaaacagggagtttaggaaaaaaacctggtaagttgtaaa
ccccgatgcttgtgcttcaatgttaatgaatgttcttgatagttgttccc
cagtcattgtttatcccagccagaagcctacagtagaggcaaagggatct
tcctgacagtgcccggcaagatccttccctgttaattaaatgtccttggc
tctcaagtgtgcctgttgccacagctgtggggagtagattttcccgggca
agatgggtgggaagttgatgggtacagagctgggaaactgcaaggtcatc
tcgttgggtttggaaagtccttgctggcgcctgttagcacatagagctcc
aatgacatagcagtgggaggtcagaggcaaggtgacagcatcaggtgaat
cggtctcattacttgaaaatcgggcctttcccaggcaaacagtgaaggta
ccaaatgatatcttcttcgaagtctaagaattcagtttatttaaacaaat
tcccacattcctattaataatgcctaaaaagagaaggaggcagcctgtgc
aatgata
attttgtttttggtgtggagattgaacccaggaccttgagcctgcttggc
aaattctcatccctgagagatcccccagccacccaccgcagccatgtcta
gcactgtgggtttctttcttcagatttccacattctgttgatagcaaata
atgccacaagattatactgactagtgggatgtcatctatcgaaacccaaa
agccaagctcttggtggtacccatagcaactcgcaagtgtcctggcaagc
tcacaaaaggctttcagacaacaccttacactggaaattcatctatgaaa
tgaacagagtggagatcattcaaggctttcagacaacaccttacactggg
tcttcatctatggcatgaacagagtggagatcatttcgtcgtgtgtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91860897_91862002
seq2: B6Ng01-012B05.b_43_1149

seq1  GAATTCAGCCACACACTGTTTCTGGAACACTCAGTTGTTGGGAAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCACACACTGTTTCTGGAACACTCAGTTGTTGGGAAAAAATA  50

seq1  TGGATTGCTTCTGTGTTTGTGCTTCCAGCATGGAGAGAGGAAAGGTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCTTCTGTGTTTGTGCTTCCAGCATGGAGAGAGGAAAGGTGGTG  100

seq1  CTCGGACTGTGAAATAGGGTGGGAACTCCATGCAGGAACTGAAGGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGACTGTGAAATAGGGTGGGAACTCCATGCAGGAACTGAAGGGGGAG  150

seq1  GGGAGCCTCCCGATGCCGGTGCAGTTCTTAAGGAGAGTTCTAGTACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCCCGATGCCGGTGCAGTTCTTAAGGAGAGTTCTAGTACAAAC  200

seq1  GTAGTGAAATGCCGATGTATTTAATGTATTCTGTCTGGGCGGCAGACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAAATGCCGATGTATTTAATGTATTCTGTCTGGGCGGCAGACTCA  250

seq1  GATGTCTGTGGTATCTCTACACTGTAGTGTAGGAAGTATTTCCTGGCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTGGTATCTCTACACTGTAGTGTAGGAAGTATTTCCTGGCTCG  300

seq1  ACGTGTGGATATAAAGTGAGGGTGAGGCGAGCACAGTGCTCCTGGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGGATATAAAGTGAGGGTGAGGCGAGCACAGTGCTCCTGGCCTGG  350

seq1  AGCCTTCTCTTCTGTTGGATCCTCCAGCTCCAGGGTGTGCCTGAGCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCTTCTGTTGGATCCTCCAGCTCCAGGGTGTGCCTGAGCCCCC  400

seq1  AGCAACCCAGTTGTCACGTGCTTCCACGTCTCTCCTGAATGAAGGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCAGTTGTCACGTGCTTCCACGTCTCTCCTGAATGAAGGGGGAT  450

seq1  TTTAGGGCTCCGGTGGGTTTGTGTCATTAATCATTTTAAGTTTCATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGCTCCGGTGGGTTTGTGTCATTAATCATTTTAAGTTTCATGATG  500

seq1  AACTCTTCAGCTTGCCAATGAGACCTTCTGCTCTGTTTTAAGGGCTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCAGCTTGCCAATGAGACCTTCTGCTCTGTTTTAAGGGCTCTGG  550

seq1  AACTGCTGGGAAAACAGGGAGTTTAGGAAAAAAACCTGGTAAGTTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGGGAAAACAGGGAGTTTAGGAAAAAAACCTGGTAAGTTGTAAA  600

seq1  CCCCGATGCTTGTGCTTCAATGTTAATGAATGTTCTTGATAGTTGTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGATGCTTGTGCTTCAATGTTAATGAATGTTCTTGATAGTTGTTCCC  650

seq1  CAGTCATTGTTTATCCCAGCCAGAAGCCTACAGTAGAGGCAAAGGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTGTTTATCCCAGCCAGAAGCCTACAGTAGAGGCAAAGGGATCT  700

seq1  TCCTGACAGTGCCCGGCAAGATCCTTCCCTGTTAATTAAATGTCCTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGTGCCCGGCAAGATCCTTCCCTGTTAATTAAATGTCCTTGGC  750

seq1  TCTCAAGTGTGCCTGTTGCCACAGCTGTGGGGAGTAGATTTTCCCGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGTGCCTGTTGCCACAGCTGTGGGGAGTAGATTTTCCCGGGCA  800

seq1  AGAT-GGTGGGAAGTTGATGGGTACAGAGCTGGGAAACTGCAGGGTCATC  849
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATGGGTGGGAAGTTGATGGGTACAGAGCTGGGAAACTGCAAGGTCATC  850

seq1  TCGTTGGGTTTGGAAAGTCCTTGCTGGCGCCTGTTAGCACATAGAGCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGGGTTTGGAAAGTCCTTGCTGGCGCCTGTTAGCACATAGAGCTCC  900

seq1  AATGACATAGCAGT-GGAGGTCAGAGGCAAGGTGACAGCATCAGGTG-AT  947
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  AATGACATAGCAGTGGGAGGTCAGAGGCAAGGTGACAGCATCAGGTGAAT  950

seq1  CGGTCTCATTACTTGAAAATCGGG-CTTTCCCAGGCAAACAGTGAAGGTA  996
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGGTCTCATTACTTGAAAATCGGGCCTTTCCCAGGCAAACAGTGAAGGTA  1000

seq1  CCAAATGATAATCGTGCTTCAGAGTCT-AGAATTTTCAGTTTATTTAAAC  1045
      ||||||||| ||| | ||||  ||||| ||||  ||||||||||||||||
seq2  CCAAATGAT-ATC-TTCTTCGAAGTCTAAGAA--TTCAGTTTATTTAAAC  1046

seq1  AAAATCACACATT-CTATTAATAGTGGCATAAAAAAGAGAAGGAGGCAG-  1093
      ||| || |||||| ||||||||| || |   |||||||||||||||||| 
seq2  AAATTCCCACATTCCTATTAATAATGCC--TAAAAAGAGAAGGAGGCAGC  1094

seq1  CTGTGCAATGATA  1106
      |||||||||||||
seq2  CTGTGCAATGATA  1107

seq1: chr16_92003117_92003527
seq2: B6Ng01-012B05.g_67_477 (reverse)

seq1  CACACACACACACACGACGAAATGATCTCCACTCTGTTCATGCCATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACGACGAAATGATCTCCACTCTGTTCATGCCATAGAT  50

seq1  GAAGACCCAGTGTAAGGTGTTGTCTGAAAGCCTTGAATGATCTCCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGTGTAAGGTGTTGTCTGAAAGCCTTGAATGATCTCCACTCT  100

seq1  GTTCATTTCATAGATGAATTTCCAGTGTAAGGTGTTGTCTGAAAGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCATAGATGAATTTCCAGTGTAAGGTGTTGTCTGAAAGCCTTT  150

seq1  TGTGAGCTTGCCAGGACACTTGCGAGTTGCTATGGGTACCACCAAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTTGCCAGGACACTTGCGAGTTGCTATGGGTACCACCAAGAGCT  200

seq1  TGGCTTTTGGGTTTCGATAGATGACATCCCACTAGTCAGTATAATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGGGTTTCGATAGATGACATCCCACTAGTCAGTATAATCTTGT  250

seq1  GGCATTATTTGCTATCAACAGAATGTGGAAATCTGAAGAAAGAAACCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTATTTGCTATCAACAGAATGTGGAAATCTGAAGAAAGAAACCCAC  300

seq1  AGTGCTAGACATGGCTGCGGTGGGTGGCTGGGGGATCTCTCAGGGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGACATGGCTGCGGTGGGTGGCTGGGGGATCTCTCAGGGATGAG  350

seq1  AATTTGCCAAGCAGGCTCAAGGTCCTGGGTTCAATCTCCACACCAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCAAGCAGGCTCAAGGTCCTGGGTTCAATCTCCACACCAAAAAC  400

seq1  AAAATGAATTC  411
      |||||||||||
seq2  AAAATGAATTC  411