BAC Information

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BAC

Clone NameB6Ng01-013N18
Chromosome3 (Build37)16 (Build37)
Map Location 92,638,326 - 92,639,33447,119,071 - 47,119,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp
Downstream geneLce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N18.bB6Ng01-013N18.g
ACCDH848567DH848568
length1,1881,000
definitionDH848567|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N18, 5' end.DH848568|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,638,326 - 92,639,334)(47,119,071 - 47,119,581)
sequence
gaattctttgtatatattgcatattagccttctatcagatgtagggttgg
taaagatcttttcccactctgttagttgtcattttgtactattgacactg
tcctttgccttatagaagctttgcaattttatgaggtcccatttgtcaat
tcttgatcttaggacataagccattggtgttctgttcaggaaattttccc
ctgtgcccatgtcctcgaggctcttcccctttttcttttcttttagtttc
agtgtatctggttttatgtggaggtccttgatccacttagacttgagctt
tgtacaaggagatatgaatggatcaatttgcatttttctatatgcttact
tatagttgagccagcaccatttgttgaaaatgctgtcttttttttccact
ggagggttttagctcctttgtcaaagatcaagaaccatatgcgcgtgggt
ccatttcttcaattctattccattgatctacctgcctgtttctgtaccag
taccatgcagttttatcactactgctctgtaatacagcttgaggtcaggg
atggtgattcccccagaaatgtttttattgttgatagtattttttgctgt
cctgggttttttgttattccagatgaatttgcaaattgctctttctaaca
gtgaagacttgagttggaaattttttaacagaagaaaatgttagcaagca
ttgaatccatttagtgggagcctgtatgtgcatggaaatgggaccatctc
ctgaagaaaggaaaagcccttacgacctgcatccttaaagaaagctgact
ttccctatctcagcagccctcaactgcttagatgaggattagactcccta
tctcagcagctctcaactgcttagatgaggatgagactccataacccttt
ccaaatctatgctgaattttgctagctctctgcatactgttctgggttca
tgtatgaagctacttatgctgtcatgtctggcaataactggttttgctga
agtcaactaatttctctggctcttacaatctttcctgtctttcttccata
tgtcacctgggccttgctaggaaagatacagtaattgtttcatttagaac
tcggagatacttgggcactctcttaatttcttgccaactgaacaaatggt
gtgttctcctaagtaaagaactcatcagtttccagtct
gaattcaatgcctcttctgacctcttagacacaaaatacatatgtggcac
gtaggtataaatgcagaaactcccaccaaaaaaacaaaattaaaaaatgt
gcaaaatagaccatgatcaaaatttatttatttatctttatgagatgttt
tatttatttacatttctaatgttatcccctttcctgatttccccccaccc
agaaaccctctattccatcccctctcctcctgctactatgaaggtgtgcc
cccacccatccacccacccctgcctccacactctcgcactcacactgggg
catcaagccttcatgggaacaagggcctcttctcccattgatgactgaca
aggccatcctctgctacctatatgactggagccatgggtccctccatgtg
tactccttgggtggtggtttagaccctgggaactctggttggttgatatt
gttgttcttcccatggggttgcaaaccccttcagctccttcagtcatttc
tctaactcctccattggggatccccacactcagtgcaatagttggctgcg
agcatccacctctgtatatgtcaggctctggatgagtctctcaggagaca
gctatatcaggctcctgtcagcatgcagttgttggcatccacaatagtgt
ctgtgtttgctgactgtatatgggatggatccccaggtggggcagtcact
gaatggcctttccttcagtctctgctccacacttggtctctttattttct
ccttttgtttcccttctaagaaggaccaaagcacctacacttggtcttcc
ttcttctttagctgcatgtagtatgtgatttgtgtcttgggtattcagag
cttttgggctaatatccacttatcatgaatgcataccatgtgtgtctttt
gtgattaggttatctcaatcaggaagatattttctaggttcacccatttg
gctagaattcataaatcgtatttaatcctaaaagtacttcttgttataat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92638326_92639334
seq2: B6Ng01-013N18.b_224_1235

seq1  GTGTTCTGTTCAGGAAATTTTCCCCTGTGCCCATGTCCTCGAGGCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTTCAGGAAATTTTCCCCTGTGCCCATGTCCTCGAGGCTCTTC  50

seq1  CCCTTTTTCTTTTCTTTTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTTCTTTTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTC  100

seq1  CTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATATGAATGGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATATGAATGGATCAA  150

seq1  TTTGCATTTTTCTATATGCTTACTTATAGTTGAGCCAGCACCATTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTTCTATATGCTTACTTATAGTTGAGCCAGCACCATTTGTTG  200

seq1  AAAATGCTGTCTTTTTTTTCCACTGGAGGGTTTTAGCTCCTTTGTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGTCTTTTTTTTCCACTGGAGGGTTTTAGCTCCTTTGTCAAAG  250

seq1  ATCAAGAACCATATGCGCGTGGGTCCATTTCTTCAATTCTATTCCATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAACCATATGCGCGTGGGTCCATTTCTTCAATTCTATTCCATTGA  300

seq1  TCTACCTGCCTGTTTCTGTACCAGTACCATGCAGTTTTATCACTACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGCCTGTTTCTGTACCAGTACCATGCAGTTTTATCACTACTGCT  350

seq1  CTGTAATACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATGTTTTT  400

seq1  ATTGTTGATAGTATTTTTTGCTGTCCTGGGTTTTTTGTTATTCCAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATAGTATTTTTTGCTGTCCTGGGTTTTTTGTTATTCCAGATGA  450

seq1  ATTTGCAAATTGCTCTTTCTAACAGTGAAGACTTGAGTTGGAAATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAATTGCTCTTTCTAACAGTGAAGACTTGAGTTGGAAATTTTTT  500

seq1  AACAGAAGAAAATGTTAGCAAGCATTGAATCCATTTAGT-GGAGCCTGTA  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAGAAGAAAATGTTAGCAAGCATTGAATCCATTTAGTGGGAGCCTGTA  550

seq1  TGTGCATGGAAATGGGACCATCTCCTGAAGAAAGGAAAAGCCCTTACGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGGAAATGGGACCATCTCCTGAAGAAAGGAAAAGCCCTTACGAC  600

seq1  CTGCATCCTTAAAGAAAGCTGACTTTCCCTATCTCAGCAGCCCTCAACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTTAAAGAAAGCTGACTTTCCCTATCTCAGCAGCCCTCAACTG  650

seq1  CTTAGATGAGGATTAGACTCCCTATCTCAGCAGCTCTCAACTGCTTAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGAGGATTAGACTCCCTATCTCAGCAGCTCTCAACTGCTTAGAT  700

seq1  GAGGATGAGACTCCATAACCCTTTCCAAATCTATGCTGAATTTTTGCTAG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGGATGAGACTCCATAACCCTTTCCAAATCTATGCTGAA-TTTTGCTAG  749

seq1  CTCTCTTGCATACTGTTCTGGGTTCATGTATGAAGCTAACTATGCTGTCA  799
      ||||| ||||||||||||||||||||||||||||||||  ||||||||||
seq2  CTCTC-TGCATACTGTTCTGGGTTCATGTATGAAGCTACTTATGCTGTCA  798

seq1  TGTCTGGCAAATACTGGTTTTGCTGAAGTCAACTATTTTCTCTGGCTCTT  849
      ||||||||||  ||||||||||||||||||||||| ||||||||||||||
seq2  TGTCTGGCAATAACTGGTTTTGCTGAAGTCAACTAATTTCTCTGGCTCTT  848

seq1  ACAATCTTT-CTGTCCTTTCTTTCCATATGGTCA-CTGGGCCTTGCTAGG  897
      ||||||||| |||| ||||| |||||||| |||| |||||||||||||||
seq2  ACAATCTTTCCTGT-CTTTC-TTCCATAT-GTCACCTGGGCCTTGCTAGG  895

seq1  AAGGGATACAGTAAATATGTTTCATTTAGAACT--GAG-TACTTGGCCA-  943
      ||  ||||||||||   ||||||||||||||||  ||| ||||||| || 
seq2  AA-AGATACAGTAA--TTGTTTCATTTAGAACTCGGAGATACTTGGGCAC  942

seq1  TCTTTTATTCTC-TGCACACTGAAC-AATTGTGTG-TCTCCATAGTAAAG  990
      ||| ||| | || |||  ||||||| ||| ||||| |||||  |||||||
seq2  TCTCTTAATTTCTTGCCAACTGAACAAATGGTGTGTTCTCCTAAGTAAAG  992

seq1  -ACTCATCATTTTCCAGTCT  1009
       |||||||| ||||||||||
seq2  AACTCATCAGTTTCCAGTCT  1012

seq1: chr16_47119071_47119581
seq2: B6Ng01-013N18.g_818_1065 (reverse)

seq1  ATTATAACAAGAAGTACATTAATTACTTTCAAGACTAACCATGATAAGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTTATTGAAGTCTTGCTATGCTCGAGGTAAGTTGTACTTTTTACATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTACTATTTAATAAGAATAGCAATTAATCTATCAAATCTTTTCCATATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGCACCGTGTTACACACATTGTGAGGCTTATCATATCTGATAAAATAA  200
                                     || ||| |  |  || || 
seq2  -------------------------------ATTATAAC--AAGAAGTAC  17

seq1  TGAGTTCTGGTGAAATCTTGTCTGCTCTAGGTGCAGGCTTCTATTCTTAG  250
      |   ||  | | ||||                  | | || |||     |
seq2  T--TTTAGGATTAAAT------------------ACGATT-TAT-----G  41

seq1  AAACTGTCATTCAGGCCTTGAAATGGAACGAC--AGAACACTATCATTAA  298
      |       ||||  |||   ||||||    ||  |||| | ||||     
seq2  A-------ATTCTAGCC---AAATGGGTGAACCTAGAA-AATATC----T  76

seq1  TCCTGCTTTACAGATGAGATAAT-TCATAAGACAGAGAAGTTAAGTTCTC  347
      ||||| ||   |||| |  ||||  || |||||| | | | || |     
seq2  TCCTGATT--GAGATAACCTAATCACAAAAGACACACATGGTATG-----  119

seq1  AGTGAGGATTTGTATCTTTTATAAAAAGTGCCATTTGAAGCCTGGCTAAG  397
                     | || || | |||||    ||  ||||   | || 
seq2  ---------------CATTCATGATAAGTGGATATT--AGCC---CAAAA  149

seq1  GTACTCATCTTTTTCTCTTCATACAAATATTAAAATAATTCACAGACCAC  447
      |             ||||  ||||  |     | | || ||||| || ||
seq2  G-------------CTCTGAATACCCA---AGACACAAATCACATACTAC  183

seq1  ATGAAGCT---CAAGAAGGAAGACCAAAGTATGGCTGCTTCAGTCCTTCT  494
      ||| ||||    ||||||||||||| |||| | | |||||  ||||||||
seq2  ATGCAGCTAAAGAAGAAGGAAGACC-AAGTGTAGGTGCTTTGGTCCTTCT  232

seq1  TAGAAAGGGCAACAAAA  511
      ||| ||||| |||||||
seq2  TAG-AAGGGAAACAAAA  248