BAC Information

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BAC

Clone NameB6Ng01-018E01
Chromosome16 (Build37)
Map Location 41,911,028 - 42,056,154
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018E01.bB6Ng01-018E01.g
ACCDH851707DH851708
length993741
definitionDH851707|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E01, 5' end.DH851708|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,055,159 - 42,056,154)(41,911,028 - 41,911,764)
sequence
gaattcttttttttttttttttgtaaaatatgttttattgttcttcaaaa
gggttcagggtttagttgtaaatcaggctgcacaccttccatcattctaa
cttctttcacttgaatggatgctgtctaatctttatttggtccaagcctc
aaatacacacacacacacacacacacacacacacacacacacacagacac
tgttttctacttttctgattctcctatactctttttacatgcgtctttca
ttaaatttgacaactgctctagggcatgtctcccaggcctgtaggagtgt
agggagtccatagcatgtcagggaggatactagattggaagagactttac
agatttctaaaatattctcttcatagttatcaggggagtaaaatatctta
tttcaggtgtttagtcatttagagatagataagactttgccttgtaggtt
tctgtagaaagaagttttgagattatcacaatttatgctgacaagaagaa
attatcctgtagaattcttaatagttttggggtatgtttcaatgggaaat
aaatgaaatactttaaaaacatattaacatgtattcctaaataatatcta
ggcaaattgacactaaccagaaactatttttacttttgtcctagttatta
aaatgcttataaaaattgtagcatcctacttttaccttactgatacattg
tgcttagattcagaaataagaaagcagaatactagcaggttttggtctca
actttttcatcttagattaaaaagcccatggaacccttgccacatccctt
tccaaatctatcagctttacagctagtagtctatacttaaggtagaggga
ctcccctaagtccttgacctaatcttttctagtcagctcccaacttgtat
tctgtcctccttttatagtcatcctttggaggagagacatgacctgggtc
atatattcatagtcctagaataagcaaatacaagttatttgtg
gaattctcagactcttccaatttgcacccagctcccttaaatgtagtaaa
gattaaaaggaccattgatatgtcatcttccacaagccatatggaaataa
cttgaacagaaaacaaacaacaaagaaacttgacacctcatagaactaga
ctaggtgtcaatcaataaggtaaacatgaaaataacgcatagtatatctg
atgctaattgagtatgggggaaaggaatgagaggtagtggcgtgtctaat
aggattgtctttacactctaaagccatggcagaagactattctctgtgat
ggtgtcattgaagcaaaggcccaagaaagatgaagatggttaaaggtgtg
cttatcgctccacccaacctgactatggtcacatcagacaaagccatatc
agaaaaggtgtggagggtcactaaggcccagcaaggcaacttgtgcttat
aattcctcaagaaaacaactgagatggcttctcatagtgaactacataac
ttttgttttacatcttattccattaaatgacctgaacacagttgtcctac
tcaacatgtctaaaagaaaggcctagattaaactctcactctaggaaaca
caaactcttgcaatacagagagcttctctttgcttgctttgcataaaata
aaaatatcaatgtttaaaaagttactaccatccatgaaatacttgctgtg
actttattctccgggaccctctttgcccaaaacaagagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42055159_42056154
seq2: B6Ng01-018E01.b_42_1034 (reverse)

seq1  CACAAAT-ACTTGTAATTTGCTTATTCTCGGGACTAATGAATATATGGAC  49
      ||||||| |||||| |||||||||||||  ||||| |||||||||| |||
seq2  CACAAATAACTTGT-ATTTGCTTATTCT-AGGACT-ATGAATATAT-GAC  46

seq1  CCAGGTCATGTCTCTCCTCCAAAAGGATGAACTATAAAAGGAGGACAGAA  99
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CCAGGTCATGTCTCTCCTCC-AAAGGATG-ACTATAAAAGGAGGACAGAA  94

seq1  TACAAGTTGGGAGCTGACTAGAAAAGATTAGGTCAAGGACTTAGGGGAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTGGGAGCTGACTAGAAAAGATTAGGTCAAGGACTTAGGGGAGT  144

seq1  CCCTCTACCTTAAGTATAGACTACTAGCTGTAAAGCTGATAGATTTGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACCTTAAGTATAGACTACTAGCTGTAAAGCTGATAGATTTGGAA  194

seq1  AGGGATGTGGCAAGGGTTCCATGGGCTTTTTAATCTAAGATGAAAAAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGGCAAGGGTTCCATGGGCTTTTTAATCTAAGATGAAAAAGTT  244

seq1  GAGACCAAAACCTGCTAGTATTCTGCTTTCTTA-TTCTGAATCTAAGCAC  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGACCAAAACCTGCTAGTATTCTGCTTTCTTATTTCTGAATCTAAGCAC  294

seq1  AATGTATCAGTAAGGTAAAAGTAGGATGCTACAA-TTTTATAAGCATTTT  347
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGTATCAGTAAGGTAAAAGTAGGATGCTACAATTTTTATAAGCATTTT  344

seq1  AATAACTAGGACAAAAGT-AAAATAGTTTCTGGTTAGTGTCAATTTGCCT  396
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATAACTAGGACAAAAGTAAAAATAGTTTCTGGTTAGTGTCAATTTGCCT  394

seq1  AGATATTATTTAGGAATACATGTTAATATGTTTTTAAAGTATTTCATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTATTTAGGAATACATGTTAATATGTTTTTAAAGTATTTCATTTA  444

seq1  TTTCCCATTGAAACATACCCCAAAACTATTAAGAATTCTACAGGATAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTGAAACATACCCCAAAACTATTAAGAATTCTACAGGATAATT  494

seq1  TCTTCTTGTCAGCATAAATTGTGATAATCTCAAAACTTCTTTCTACAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTCAGCATAAATTGTGATAATCTCAAAACTTCTTTCTACAGAA  544

seq1  ACCTACAAGGCAAAGTCTTATCTATCTCTAAATGACTAAACACCTGAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAGGCAAAGTCTTATCTATCTCTAAATGACTAAACACCTGAAAT  594

seq1  AAGATATTTTACTCCCCTGATAACTATGAAGAGAATATTTTAGAAATCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTACTCCCCTGATAACTATGAAGAGAATATTTTAGAAATCTG  644

seq1  TAAAGTCTCTTCCAATCTAGTATCCTCCCTGACATGCTATGGACTCCCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTCTTCCAATCTAGTATCCTCCCTGACATGCTATGGACTCCCTA  694

seq1  CACTCCTACAGGCCTGGGAGACATGCCCTAGAGCAGTTGTCAAATTTAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTACAGGCCTGGGAGACATGCCCTAGAGCAGTTGTCAAATTTAAT  744

seq1  GAAAGACGCATGTAAAAAGAGTATAGGAGAATCAGAAAAGTAGAAAACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACGCATGTAAAAAGAGTATAGGAGAATCAGAAAAGTAGAAAACAG  794

seq1  TGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTG  844

seq1  AGGCTTGGACCAAATAAAGATTAGACAGCATCCATTCAAGTGAAAGAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGACCAAATAAAGATTAGACAGCATCCATTCAAGTGAAAGAAGT  894

seq1  TAGAATGATGGAAGGTGTGCAGCCTGATTTACAACTAAACCCTGAACCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGATGGAAGGTGTGCAGCCTGATTTACAACTAAACCCTGAACCCT  944

seq1  TTTGAAGAACAATAAAACATATTTTACAAAAAAAAAAAAAAAAAGAATTC  996
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGAAGAACAATAAAACATATTTTAC-AAAAAAAAAAAAAAAAGAATTC  993

seq1: chr16_41911028_41911764
seq2: B6Ng01-018E01.g_68_808

seq1  GAATTCTCAGACTCTTCCAATTTGCACCCAGCTCCCTTAAATGTAGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGACTCTTCCAATTTGCACCCAGCTCCCTTAAATGTAGTAAA  50

seq1  GATTAAAAGGACCATTGATATGTCATCTTCCACAAGCCATATGGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAGGACCATTGATATGTCATCTTCCACAAGCCATATGGAAATAA  100

seq1  CTTGAACAGAAAACAAACAACAAAGAAACTTGACACCTCATAGAACTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAGAAAACAAACAACAAAGAAACTTGACACCTCATAGAACTAGA  150

seq1  CTAGGTGTCAATCAATAAGGTAAACATGAAAATAACGCATAGTATATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTCAATCAATAAGGTAAACATGAAAATAACGCATAGTATATCTG  200

seq1  ATGCTAATTGAGTATGGGGGAAAGGAATGAGAGGTAGTGGCGTGTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTGAGTATGGGGGAAAGGAATGAGAGGTAGTGGCGTGTCTAAT  250

seq1  AGGATTGTCTTTACACTCTAAAGCCATGGCAGAAGACTATTCTCTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTCTTTACACTCTAAAGCCATGGCAGAAGACTATTCTCTGTGAT  300

seq1  GGTGTCATTGAAGCAAAGGCCCAAGAAAGATGAAGATGGTTAAAGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATTGAAGCAAAGGCCCAAGAAAGATGAAGATGGTTAAAGGTGTG  350

seq1  CTTATCGCTCCACCCAACCTGACTATGGTCACATCAGACAAAGCCATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCGCTCCACCCAACCTGACTATGGTCACATCAGACAAAGCCATATC  400

seq1  AGAAAAGGTGTGGAGGGTCACTAAGGCCCAGCAAGGCAACTTGTGCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTGTGGAGGGTCACTAAGGCCCAGCAAGGCAACTTGTGCTTAT  450

seq1  AATTCCTCAAGAAAACAACTGAGATGGCTTCTCATAGTGAACTACATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCAAGAAAACAACTGAGATGGCTTCTCATAGTGAACTACATAAC  500

seq1  TTTTGTTTTACATCTTATTCCATTAAATGACCTGAACACAGTTGTCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTACATCTTATTCCATTAAATGACCTGAACACAGTTGTCCTAC  550

seq1  GCAACATGTCTAAAAGAAAGGCCTAGATTTAAACTCTCACTCTAGGAAAC  600
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAACATGTCTAAAAGAAAGGCCTAGA-TTAAACTCTCACTCTAGGAAAC  599

seq1  ACAAACTCTATGCAATACAGAGAGCTTCTCTTTGCTTGC-TTGCA-AAAA  648
      ||||||||| ||||||||||||||||||||||||||||| ||||| ||||
seq2  ACAAACTCT-TGCAATACAGAGAGCTTCTCTTTGCTTGCTTTGCATAAAA  648

seq1  TAGAAATATCAATGTTTAAAAAGTTACTACCAGCCATGAAATAC-TGCTG  697
      || ||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TAAAAATATCAATGTTTAAAAAGTTACTACCATCCATGAAATACTTGCTG  698

seq1  TGACTTTA-TCCCCAGGACCCGC--TGGCCCAAACAAGAGAAT  737
      |||||||| || || |||||| |  || || ||||||||||||
seq2  TGACTTTATTCTCCGGGACCCTCTTTGCCCAAAACAAGAGAAT  741