BAC Information

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BAC

Clone NameB6Ng01-018L21
Chromosome16 (Build37)
Map Location 65,388,531 - 65,489,581
singlet/doubletdoublet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L21.bB6Ng01-018L21.g
ACCDH852057DH852058
length1,161973
definitionDH852057|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L21, 5' end.DH852058|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,488,417 - 65,489,581)(65,388,531 - 65,389,506)
sequence
gaattcaattacagtaaaaagtttattaaaacaaaacaaaacaacaacaa
caacaacaacaaaaagaaacagaactaaatttagaaaaggccccactggc
agagaacacaagtcgataatcactttccttagtcaatagacaatgtgaaa
agtactaattgactttgatattaaatataattctactatgattggaaagc
agcttctagttaatgaattaatgatttttaacaaacccaagagaaagcac
catttaaaacctgcatagtatggcttcagcctgtctttcatgtcttttcc
tcctctatatatgagggcagttagtgactttgtttggtttcataatcatt
atttacaagtcagttttatgggaaaagagattttgatcatcagtgttttc
tagtttttaaggtgcaaatactgtgggcatagctgttttcaaccatgggt
ttcaaaggaaacatgtacaactttaactctccatgttctagccaagccag
tcccagaatgttagcagatgtccctttattcttacctatagtgtaagcca
tgtagtgtgtgcacctcgcaaatggcagtgctttactgaagagtgtgtac
cattgctgctgttgcatttctacattcttgtctttgtccacacaggttgg
cttgacaagacagcctggatggctttaataacagacttgagtttccttag
ttctggaagctaggagttcacaatcaaactgctctgtctagctttctagc
agccatgttctcaccgagatggtccatgtcctttattctgtacagtcaca
aaaacctgtgcttcctcctctctgtgcaaggccacaagtcccttaagaag
acattcatactattaatgtccttatttaactaaagtgttcatttaagaca
tcaaatataattacattggatattaggacttcaacatctgaatgttgaaa
ataacaacaacaaaaacccacaacaaaaccaataactttcatagtattcc
tgagtaccctctggttgtgcctgatatacccccaatttctgaagctgctc
atgctagatactagttcattctatcttcctctgtatgtgacatgatagaa
atgatccagaattgtaacatctcacttcatcggagctcatcttgtgactg
aaggttttctc
gaattcacagacaggaagcacctagtagactctgtgagcttaaaacgaaa
taaaacaaaacaaaacaagcaaaataaaacttatgggaaggaacatgtta
ggaggaggaatgaggaaggaacaggaggggaggtcctgggaagtggattt
gatcaaaacacattggatacatgtgtgaacttattggttaaaattaatgt
caaagaaacagattcatgaaggggttacttatttattaataagtgtgtaa
aatatgcttgacaccttgattttacataacattacatatttcagaattgc
aaactcataatgtatttttgtgttgtttgaagccataaacctttcaggag
agagagagagagaatgtgtatatgcaataggaatgattatgtatgcaata
atacagaagtttgtcatttataatttaaggtttccatttacaaaatattg
aagttcagcatttagaatctgtatagtatagtaaagaaagaagaaaataa
aataaaaacaccagtttgagtctcttaaagacccagacacagtccttgca
ggacttcccatattttttgctggattttctccttcacaaaagcccataat
cgcactcacttgctggtactggactagaggcattctgaacaggccagaca
caggggtcctctcatcctagaacactcctttcactcctcaaggctttccc
agcttcccaacacccccatgcatgtggtttttgaattatattgaatttaa
attgttttcagttgtgtctgcacacttttgcccttgtcgccttgaggcag
aagtcccccctttgagcctttttgtctagtcttgtttgactgtaacactt
ttattccttatatttatcacgataaatcgtggggaatatcattaattttt
tctttcaaaagtattgtcattttcttcagtattggaggctatgtttttgc
aaacaaatctgaactcttgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65488417_65489581
seq2: B6Ng01-018L21.b_44_1204 (reverse)

seq1  GAGAAAAACTTCCAGTCACCAAGATGAGCTTCGATGAAGTGAGATGTTAC  50
      ||||||| ||| |||||| ||||||||||| |||||||||||||||||||
seq2  GAGAAAACCTT-CAGTCA-CAAGATGAGCTCCGATGAAGTGAGATGTTAC  48

seq1  AA-TCT-GATCATGTCTATCAATGTCACATACAGA-GAAGATAGAATGAA  97
      || ||| |||||| |||||| |||||||||||||| ||||||||||||||
seq2  AATTCTGGATCATTTCTATC-ATGTCACATACAGAGGAAGATAGAATGAA  97

seq1  CTAGTATCTAGCATGAGCAAGCTTCAGAAATTGTGTGTATATCAGGCACA  147
      |||||||||||||||||| |||||||||||||| | ||||||||||||||
seq2  CTAGTATCTAGCATGAGC-AGCTTCAGAAATTGGGGGTATATCAGGCACA  146

seq1  ACCAGAGGGTACTCAGGAATACTATGAAAGTTATTGGTTTTTGTTGTGGG  197
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCAGAGGGTACTCAGGAATACTATGAAAGTTATTGG-TTTTGTTGTGGG  195

seq1  TTTTTTGTTGTTGTTATTTTTCAACATTCAGATGTTGAAGTCCTAATATC  247
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -TTTTTGTTGTTGTTA-TTTTCAACATTCAGATGTTGAAGTCCTAATATC  243

seq1  CAATGTAATTATATTTGATGTCTTAAATGAACACTTTAGTTAAATAAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATTATATTTGATGTCTTAAATGAACACTTTAGTTAAATAAGGA  293

seq1  CATTAATAGTATGAATGTCTTCTTAAGGGACTTGTGGCCTTGCACAGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAGTATGAATGTCTTCTTAAGGGACTTGTGGCCTTGCACAGAGA  343

seq1  GGAGGAAGCACAGGTTTTTGTGACTGTACAGAATAAAGGACATGGACCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCACAGGTTTTTGTGACTGTACAGAATAAAGGACATGGACCAT  393

seq1  CTCGGTGAGAACATGGCTGCTAGAAAGCTAGACAGAGCAGTTTGATTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGAGAACATGGCTGCTAGAAAGCTAGACAGAGCAGTTTGATTGTG  443

seq1  AACTCCTAGCTTCCAGAACTAAGGAAACTCAAGTCTGTTATTAAAGCCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAGCTTCCAGAACTAAGGAAACTCAAGTCTGTTATTAAAGCCAT  493

seq1  CCAGGCTGTCTTGTCAAGCCAACCTGTGTGGACAAAGACAAGAATGTAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTCTTGTCAAGCCAACCTGTGTGGACAAAGACAAGAATGTAGA  543

seq1  AATGCAACAGCAGCAATGGTACACACTCTTCAGTAAAGCACTGCCATTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACAGCAGCAATGGTACACACTCTTCAGTAAAGCACTGCCATTTG  593

seq1  CGAGGTGCACACACTACATGGCTTACACTATAGGTAAGAATAAAGGGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGCACACACTACATGGCTTACACTATAGGTAAGAATAAAGGGACA  643

seq1  TCTGCTAACATTCTGGGACTGGCTTGGCTAGAACATGGAGAGTTAAAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAACATTCTGGGACTGGCTTGGCTAGAACATGGAGAGTTAAAGTT  693

seq1  GTACATGTTTCCTTTGAAACCCATGGTTGAAAACAGCTATGCCCACAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTTTCCTTTGAAACCCATGGTTGAAAACAGCTATGCCCACAGTA  743

seq1  TTTGCACCTTAAAAACTAGAAAACACTGATGATCAAAATCTCTTTTCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCTTAAAAACTAGAAAACACTGATGATCAAAATCTCTTTTCCCA  793

seq1  TAAAACTGACTTGTAAATAATGATTATGAAACCAAACAAAGTCACTAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGACTTGTAAATAATGATTATGAAACCAAACAAAGTCACTAACT  843

seq1  GCCCTCATATATAGAGGAGGAAAAGACATGAAAGACAGGCTGAAGCCATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATATATAGAGGAGGAAAAGACATGAAAGACAGGCTGAAGCCATA  893

seq1  CTATGCAGGTTTTAAATGGTGCTTTCTCTTGGGTTTGTTAAAAATCATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGGTTTTAAATGGTGCTTTCTCTTGGGTTTGTTAAAAATCATTA  943

seq1  ATTCATTAACTAGAAGCTGCTTTCCAATCATAGTAGAATTATATTTAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAACTAGAAGCTGCTTTCCAATCATAGTAGAATTATATTTAATA  993

seq1  TCAAAGTCAATTAGTACTTTTCACATTGTCTATTGACTAAGGAAAGTGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAATTAGTACTTTTCACATTGTCTATTGACTAAGGAAAGTGAT  1043

seq1  TATCGACTTGTGTTCTCTGCCAGTGGGGCCTTTTCTAAATTTAGTTCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGACTTGTGTTCTCTGCCAGTGGGGCCTTTTCTAAATTTAGTTCTGT  1093

seq1  TTCTTTTTGTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTTAATAAACTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTTAATAAACTT  1143

seq1  TTTACTGTAATTGAATTC  1165
      ||||||||||||||||||
seq2  TTTACTGTAATTGAATTC  1161

seq1: chr16_65388531_65389506
seq2: B6Ng01-018L21.g_68_1040

seq1  GAATTCACAGACAGGAAGCACCTAGTAGACTCTGTGAGCTTAAAACGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACAGGAAGCACCTAGTAGACTCTGTGAGCTTAAAACGAAA  50

seq1  TAAAACAAAACAAAACAAGCAAAATAAAACTTATGGGAAGGAACATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAACAAAACAAGCAAAATAAAACTTATGGGAAGGAACATGTTA  100

seq1  GGAGGAGGAATGAGGAAGGAACAGGAGGGGAGGTCCTGGGAAGTGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAATGAGGAAGGAACAGGAGGGGAGGTCCTGGGAAGTGGATTT  150

seq1  GATCAAAACACATTGGATACATGTGTGAACTTATTGGTTAAAATTAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACACATTGGATACATGTGTGAACTTATTGGTTAAAATTAATGT  200

seq1  CAAAGAAACAGATTCATGAAGGGGTTACTTATTTATTAATAAGTGTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACAGATTCATGAAGGGGTTACTTATTTATTAATAAGTGTGTAA  250

seq1  AATATGCTTGACACCTTGATTTTACATAACATTACATATTTCAGAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTTGACACCTTGATTTTACATAACATTACATATTTCAGAATTGC  300

seq1  AAACTCATAATGTATTTTTGTGTTGTTTGAAGCCATAAACCTTTCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATAATGTATTTTTGTGTTGTTTGAAGCCATAAACCTTTCAGGAG  350

seq1  AGAGAGAGAGAGAATGTGTATATGCAATAGGAATGATTATGTATGCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAATGTGTATATGCAATAGGAATGATTATGTATGCAATA  400

seq1  ATACAGAAGTTTGTCATTTATAATTTAAGGTTTCCATTTACAAAATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTTTGTCATTTATAATTTAAGGTTTCCATTTACAAAATATTG  450

seq1  AAGTTCAGCATTTAGAATCTGTATAGTATAGTAAAGAAAGAAGAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGCATTTAGAATCTGTATAGTATAGTAAAGAAAGAAGAAAATAA  500

seq1  AATAAAAACACCAGTTTGAGTCTCTTAAAGACCCAGACACAGTCCTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACACCAGTTTGAGTCTCTTAAAGACCCAGACACAGTCCTTGCA  550

seq1  GGACTTCCCATATTTTTTGCTGGATTTTCTCCTTCACAAAAGCCCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCATATTTTTTGCTGGATTTTCTCCTTCACAAAAGCCCATAAT  600

seq1  CGCACTCACTTGCTGGTACTGGACTAGAGGCATTCTGAACAGGCCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTCACTTGCTGGTACTGGACTAGAGGCATTCTGAACAGGCCAGACA  650

seq1  CAGGGGTCCTCTCATCCTAGAACACTCCTTTCACTCCTCAAGGCTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCCTCTCATCCTAGAACACTCCTTTCACTCCTCAAGGCTTTCCC  700

seq1  AGCTTCCCAACACCCCCATGCATGTGGTTTTTGAATTATATTGAATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCAACACCCCCATGCATGTGGTTTTTGAATTATATTGAATTTAA  750

seq1  ATTGTTTTCAGTTGTGTCTGCAGACTTTTGCCCTTGTCGCCTTGAGGCAG  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGTTTTCAGTTGTGTCTGCACACTTTTGCCCTTGTCGCCTTGAGGCAG  800

seq1  AAGT-CCCCCTTTGAGCCTTTTTTGTCTAGTCTTGTTTGACTGTAAACAC  849
      |||| ||||||||||||| ||||||||||||||||||||||||| |||||
seq2  AAGTCCCCCCTTTGAGCC-TTTTTGTCTAGTCTTGTTTGACTGT-AACAC  848

seq1  TTTTATTCCTTATATTTTATCACGATTAATTCTGGGTGAATATCATTATT  899
      |||||||||||||| ||||||||||| |||  |||| ||||||||||| |
seq2  TTTTATTCCTTATA-TTTATCACGATAAATCGTGGG-GAATATCATTAAT  896

seq1  TTTTTCTTTCAAAAGTCATTGTCATTTTCTTCAGTAATGTAGGCTATGTT  949
      |||||||||||||||| ||||||||||||||||||| || ||||||||||
seq2  TTTTTCTTTCAAAAGT-ATTGTCATTTTCTTCAGTATTGGAGGCTATGTT  945

seq1  TTTACAAACAAACCTGAAATC-TGTTGA  976
      ||| |||||||| ||||| || ||||||
seq2  TTTGCAAACAAATCTGAACTCTTGTTGA  973