BAC Information

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BAC

Clone NameB6Ng01-022I24
Chromosome16 (Build37)
Map Location 89,327,861 - 89,328,999
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022I24.bB6Ng01-022I24.g
ACCDH854737DH854738
length1,0631,132
definitionDH854737|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I24, 5' end.DH854738|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgctagtgttttcactgcttgagtgtacatagcttctgggaag
atgtgtagaaatactgctggatgtgatttgacacgattttagttttcttt
caaaatcatattctgtagttctctttgtcttgaaagccacctccatcaag
taattaacatatgctaagtacacaacttgcatgtttcactaatgaaccat
aaaactggggagctgttggttgcaagcatagggttagttatcatcaaaga
agtattgcctagattaccagcatcatcactgatatgactaaggtcaagcg
acatggtcttcttcagactctttctgtacataaattaggtacattgatca
ctagcttcatctgaatgctataattaataatttaaaaattattttattta
tttacattccagatgttgccccatctcctggtttccccatcccagaattc
ttcatcccatctctcctcctctatgcctctgagaggatgctccccctgcc
tcccatcccccaccctaacccctacccctggtatcctccttccctctggc
atcaagcctctgcaagattaggtaatctgctcccacagaggccaaacaat
taagtcctctgttacatatgtgctgggggccatggaccagcccatgtata
ctctttggttggtagcctagtctttgggaggtcccaggggaccaggttag
ttgatactgttgttcttccaatggggtttacatccccttcagctccttca
gtcattcccctaacttccatagaggtcccccacctcagtccagtgattgg
ctgtaagtatctgcatctatctcagtctactcaggctgatggagcctctc
agaggacagccatgctagcttcctattatacctgaagatccagctatatc
actcctggatatatatccaaaagatattccaccggtacacaaggacactt
gcaccgcttatggtcataacagccttattcatagtatcccagaaactggt
aacatccagatgggcctccatcaaagatgaattcagaaaatggggttgta
ttacacaatgtga
gaattcacatcagaatccttgaccacatcatagaatggcataacaacctg
tgtggctttaagtcattgcattttgaagtaatttatttagccatatattt
gtaactgaaatgccttggtagctaaaacctatgatagcaagtccataaat
ttcacactgaaaacaaagattaaatcatgtaagggtaattgccagcttct
tcaggggtaacacatccaggggcaactttcctgtggactgccacttccct
tgtcactttttcccaagtccagtcactttatggaatccctctgcacccat
agtgattagcctggtatctgcagtgaccggcccaattataggttcatctt
tatttagatgagcagttctcaaacttctaaggctgtgaccctttaaaata
catttcctcctgctatggtgacccccaaccataaattattttgttgctac
ttcctaactataattgtgatagttataaatcataatttaattacctgata
ttagacttctgttaaaggatcccattagggatcaggatccacagtttgag
accatctgatcttgattctttcttcatcctatattagccatctctttcct
gagttgtacaagttcctgttgtaaagtcttaatgagatttttggtacata
aataatgcttgaaatccagtcttgtgtgtatgcatggttgagtgtgtgaa
ttctagtttgtttcaggatatccacttgtctttggtcacagacacaagat
gcttgtcgttattaaagctgttccatttgttttcagttagtttgtgaagt
atttttatcaaaacatggtagaaagggagaggctggcatatgcagaaatc
agagtcaccccttctgtttgatatccaggcctttcatgctcagtagctgc
aaacatggtccagggatctgttgtgcacagagaatgcctccacttgatca
gataaagtaaatggctctgtgttcctgggaaagaaagcaccataaccgaa
ttggacacaaaagaaactctttctaccgaactggacgtccatagaaaacc
tggaatgtctaaaaatatatctacctgggcagtgtgcccaccacgaggga
catatccattggataccgcctcaaataaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89327861_89328999
seq2: B6Ng01-022I24.g_69_1200

seq1  GAATTCACATCAGAATCCTTGACCACATCATAGAATGGCATAACAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCAGAATCCTTGACCACATCATAGAATGGCATAACAACCTG  50

seq1  TGTGGCTTTAAGTCATTGCATTTTGAAGTAATTTATTTAGCCATATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTAAGTCATTGCATTTTGAAGTAATTTATTTAGCCATATATTT  100

seq1  GTAACTGAAATGCCTTGGTAGCTAAAACCTATGATAGCAAGTCCATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGAAATGCCTTGGTAGCTAAAACCTATGATAGCAAGTCCATAAAT  150

seq1  TTCACACTGAAAACAAAGATTAAATCATGTAAGGGTAATTGCCAGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGAAAACAAAGATTAAATCATGTAAGGGTAATTGCCAGCTTCT  200

seq1  TCAGGGGTAACACATCCAGGGGCAACTTTCCTGTGGACTGCCACTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTAACACATCCAGGGGCAACTTTCCTGTGGACTGCCACTTCCCT  250

seq1  TGTCACTTTTTCCCAAGTCCAGTCACTTTATGGAATCCCTCTGCACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTTTCCCAAGTCCAGTCACTTTATGGAATCCCTCTGCACCCAT  300

seq1  AGTGATTAGCCTGGTATCTGCAGTGACCGGCCCAATTATAGGTTCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAGCCTGGTATCTGCAGTGACCGGCCCAATTATAGGTTCATCTT  350

seq1  TATTTAGATGAGCAGTTCTCAAACTTCTAAGGCTGTGACCCTTTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATGAGCAGTTCTCAAACTTCTAAGGCTGTGACCCTTTAAAATA  400

seq1  CATTTCCTCCTGCTATGGTGACCCCCAACCATAAATTATTTTGTTGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTCCTGCTATGGTGACCCCCAACCATAAATTATTTTGTTGCTAC  450

seq1  TTCCTAACTATAATTGTGATAGTTATAAATCATAATTTAATTACCTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTATAATTGTGATAGTTATAAATCATAATTTAATTACCTGATA  500

seq1  TTAGACTTCTGTTAAAGGATCCCATTAGGGATCAGGATCCACAGTTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCTGTTAAAGGATCCCATTAGGGATCAGGATCCACAGTTTGAG  550

seq1  ACCATCTGATCTTGATTCTTTCTTCATCCTATATTAGCCATCTCTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGATCTTGATTCTTTCTTCATCCTATATTAGCCATCTCTTTCCT  600

seq1  GAGTTGTACAAGTTCCTGTTGTAAAGTCTTAATGAGATTTTTGGTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTACAAGTTCCTGTTGTAAAGTCTTAATGAGATTTTTGGTACATA  650

seq1  AATAATGCTTGAAATCCAGTCTTGTGTGTATGCATGGTTGAGTGTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTTGAAATCCAGTCTTGTGTGTATGCATGGTTGAGTGTGTGAA  700

seq1  TTCTAGTTTGTTTCAGGATATCCACTTGTCTTTGGTCACAGACACAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTTGTTTCAGGATATCCACTTGTCTTTGGTCACAGACACAAGAT  750

seq1  GCTTGTCGTTATTAAAGCTGTTCCATTTGTTTTCAGTTAGTTTGTGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCGTTATTAAAGCTGTTCCATTTGTTTTCAGTTAGTTTGTGAAGT  800

seq1  ATTTTTATCAAAACATGGTAGAAAGGGAGAGGCTGGCATATGCAGAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCAAAACATGGTAGAAAGGGAGAGGCTGGCATATGCAGAAATC  850

seq1  AGAGTCACCCCTTCTGTTTGATATCCAGGCCTTTCATGCTCAGTAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACCCCTTCTGTTTGATATCCAGGCCTTTCATGCTCAGTAGCTGC  900

seq1  AAACAT-GTCCAGGGATTCTGTTGTGCACAGAGAATG-CTCCACTTGATC  948
      |||||| ||||||||| |||||||||||||||||||| ||||||||||||
seq2  AAACATGGTCCAGGGA-TCTGTTGTGCACAGAGAATGCCTCCACTTGATC  949

seq1  AGATAAAGTAGAATGCTCTGTGTTTCTGGGAAAGGAAGCAACATAACCGA  998
      |||||||||| |  |||||||||| ||||||||| ||||| |||||||||
seq2  AGATAAAGTAAATGGCTCTGTGTTCCTGGGAAAGAAAGCACCATAACCGA  999

seq1  TTTGGACACAAAAGAAACTCTTTCTATCGAAACTGAACGTTCAATAGAAA  1048
       ||||||||||||||||||||||||| || ||||| ||| || |||||||
seq2  ATTGGACACAAAAGAAACTCTTTCTACCG-AACTGGACG-TCCATAGAAA  1047

seq1  CACCTGGAATGTCTAAAATATACATCTACCATGCCAG-GTGCCCACACAG  1097
       ||||||||||||||||| ||| |||||||  | ||| ||||||||   |
seq2  -ACCTGGAATGTCTAAAA-ATATATCTACCTGGGCAGTGTGCCCACCACG  1095

seq1  AGGGAACATAATCCAATTGGGATACAGCCTAAAATTAAAAGC  1139
      |||| |||| |||||  | |||||| |||| ||| |||||||
seq2  AGGG-ACAT-ATCCA--TTGGATACCGCCTCAAA-TAAAAGC  1132