BAC Information

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BAC

Clone NameB6Ng01-027M09
Chromosome16 (Build37)
Map Location 49,927,863 - 50,071,343
singlet/doubletdoublet
Overlap geneEG433024, LOC100043769, LOC628951, EG224180
Upstream gene2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47
Downstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M09.bB6Ng01-027M09.g
ACCDH858428DH858429
length641869
definitionDH858428|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M09, 5' end.DH858429|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,070,705 - 50,071,343)(49,927,863 - 49,928,739)
sequence
gaattcctcacccatcctccccatctataattctccccaccatgtctctt
atttgttatttctttgcaaagaagcaggaacgtttgcctggttttgctgt
tgtaatttgagtgattctgctgtcatttgtctttcccgtaatttgtagct
gtgtggacttgcttaggaaaaaaaaatgttttgggcaagagtgctttgac
agtgaatagtttcgatctgagtgatgcagcacaaccaacacttttccttt
gcttgggaggcttgcagcttagccctgcctctgctgcaggctccagggtg
tgtctgagtattcgtccctgtgtcttcccactgtggtttacacagagcag
aagcagccgctagctgataccagtattttcaatatgacagacagaagcag
ctttagggtagggagagtccaatcactctgacatgcttaaagatctccac
tggaagtagcctatgtcaggtgtgctcatattctgtcattcagagctacc
tcatggccaagtttcagtgtcagagggctctgccaggaaagtgcctcaaa
cctagagaggaaataagcaaaatgatggtgagtggttggtttttctttgt
tcttattttttctttgatgaaggttacagtcatttttttta
gaattctgagattcttcttatcagttgctgtcactgggtctacacgatga
gtgcatactgtgtatcatgttcttagacaaatgcagtactcctttcatcc
ctatcgatgaatgactactatgtattagattcttagacaaatggagcact
tctaccatccctgtctatgagtacctactgtgtgtcaggttctcagatga
atgcaacatccctaccatttatgacaacgttggctacagagatgattctt
tgctgtgtatgaatcctatcagaagaaaatccccaggaagtcctgagact
tctgtacctatagctgtaagtcagggtggaaacagcctactatcaactga
atgtttgtgttcctcccccaaattcagattgaaagtataaccactgctgt
ggtgatgctgggtacgtgatctttgggctatataattagattgggttcat
aagggtgaagcctttctgacagctgtcaggaagaggagatagtcagaaac
aggagctggtggacctgtgtctttccaacatccagaactgtgagaaataa
ctgatcttcaagctacctcatctacaggacactgatgcagcagaccaagt
taagctatgacccacggacattctttggttacaaactcaccaattatact
tctatagaaatgaccagtaatcaaaagtgcccttcagaatttgggacaaa
agttctgttagaatatagattgatggatgcttgcttcatttccaggaagt
agtcagtaatacaactcaagcttctaagaactcctagtcctttataagca
ctttgaactgttatcatttctctaatcccacaacaccgggtggaaagttc
tttgcaccttttatccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50070705_50071343
seq2: B6Ng01-027M09.b_41_681 (reverse)

seq1  TTAAAAAAATGACTGTAACC-TCATCAAAGAATAAATAAGAACAAAG-AA  48
      | |||||||||||||||||| ||||||||||| |||||||||||||| ||
seq2  TAAAAAAAATGACTGTAACCTTCATCAAAGAAAAAATAAGAACAAAGAAA  50

seq1  AACCAACCACTCACCATCATTTTGCTTATTTCCTCTCTAGGTTTGAGGCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCACTCACCATCATTTTGCTTATTTCCTCTCTAGGTTTGAGGCA  100

seq1  CTTTCCTGGCAGAGCCCTCTGACACTGAAACTTGGCCATGAGGTAGCTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGCAGAGCCCTCTGACACTGAAACTTGGCCATGAGGTAGCTCT  150

seq1  GAATGACAGAATATGAGCACACCTGACATAGGCTACTTCCAGTGGAGATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAGAATATGAGCACACCTGACATAGGCTACTTCCAGTGGAGATC  200

seq1  TTTAAGCATGTCAGAGTGATTGGACTCTCCCTACCCTAAAGCTGCTTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCATGTCAGAGTGATTGGACTCTCCCTACCCTAAAGCTGCTTCTG  250

seq1  TCTGTCATATTGAAAATACTGGTATCAGCTAGCGGCTGCTTCTGCTCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATATTGAAAATACTGGTATCAGCTAGCGGCTGCTTCTGCTCTGT  300

seq1  GTAAACCACAGTGGGAAGACACAGGGACGAATACTCAGACACACCCTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCACAGTGGGAAGACACAGGGACGAATACTCAGACACACCCTGGA  350

seq1  GCCTGCAGCAGAGGCAGGGCTAAGCTGCAAGCCTCCCAAGCAAAGGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGCAGAGGCAGGGCTAAGCTGCAAGCCTCCCAAGCAAAGGAAAA  400

seq1  GTGTTGGTTGTGCTGCATCACTCAGATCGAAACTATTCACTGTCAAAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTTGTGCTGCATCACTCAGATCGAAACTATTCACTGTCAAAGCA  450

seq1  CTCTTGCCCAAAACATTTTTTTTTCCTAAGCAAGTCCACACAGCTACAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCAAAACATTTTTTTTTCCTAAGCAAGTCCACACAGCTACAAA  500

seq1  TTACGGGAAAGACAAATGACAGCAGAATCACTCAAATTACAACAGCAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGGAAAGACAAATGACAGCAGAATCACTCAAATTACAACAGCAAAA  550

seq1  CCAGGCAAACGTTCCTGCTTCTTTGCAAAGAAATAACAAATAAGAGACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAACGTTCCTGCTTCTTTGCAAAGAAATAACAAATAAGAGACAT  600

seq1  GGTGGGGAGAATTATAGATGGGGAGGATGGGTGAGGAATTC  639
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAGAATTATAGATGGGGAGGATGGGTGAGGAATTC  641

seq1: chr16_49927863_49928739
seq2: B6Ng01-027M09.g_71_939

seq1  GAATTCTGAGATTCTTCTTATCAGTTGCTGTCACTGGGTCTACACGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATTCTTCTTATCAGTTGCTGTCACTGGGTCTACACGATGA  50

seq1  GTGCATACTGTGTATCATGTTCTTAGACAAATGCAGTACTCCTTTCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACTGTGTATCATGTTCTTAGACAAATGCAGTACTCCTTTCATCC  100

seq1  CTATCGATGAATGACTACTATGTATTAGATTCTTAGACAAATGGAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGATGAATGACTACTATGTATTAGATTCTTAGACAAATGGAGCACT  150

seq1  TCTACCATCCCTGTCTATGAGTACCTACTGTGTGTCAGGTTCTCAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATCCCTGTCTATGAGTACCTACTGTGTGTCAGGTTCTCAGATGA  200

seq1  ATGCAACATCCCTACCATTTATGACAACGTTGGCTACAGAGATGATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATCCCTACCATTTATGACAACGTTGGCTACAGAGATGATTCTT  250

seq1  TGCTGTGTATGAATCCTATCAGAAGAAAATCCCCAGGAAGTCCTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTATGAATCCTATCAGAAGAAAATCCCCAGGAAGTCCTGAGACT  300

seq1  TCTGTACCTATAGCTGTAAGTCAGGGTGGAAACAGCCTACTATCAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCTATAGCTGTAAGTCAGGGTGGAAACAGCCTACTATCAACTGA  350

seq1  ATGTTTGTGTTCCTCCCCCAAATTCAGATTGAAAGTATAACCACTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTTCCTCCCCCAAATTCAGATTGAAAGTATAACCACTGCTGT  400

seq1  GGTGATGCTGGGTACGTGATCTTTGGGCTATATAATTAGATTGGGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCTGGGTACGTGATCTTTGGGCTATATAATTAGATTGGGTTCAT  450

seq1  AAGGGTGAAGCCTTTCTGACAGCTGTCAGGAAGAGGAGATAGTCAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAAGCCTTTCTGACAGCTGTCAGGAAGAGGAGATAGTCAGAAAC  500

seq1  AGGAGCTGGTGGACCTGTGTCTTTCCAACATCCAGAACTGTGAGAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGTGGACCTGTGTCTTTCCAACATCCAGAACTGTGAGAAATAA  550

seq1  CTGATCTTCAAGCTACCTCATCTACAGGACACTGATGCAGCAGACCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTCAAGCTACCTCATCTACAGGACACTGATGCAGCAGACCAAGT  600

seq1  TAAGCTATGACCCACGGACATTCTTTGGTTACAAACTCACCAATTATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTATGACCCACGGACATTCTTTGGTTACAAACTCACCAATTATACT  650

seq1  TCTATAG-AATGACCAGTAATCAAAAGTGCCCTTCAGAAATTTGGGACAA  699
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTATAGAAATGACCAGTAATCAAAAGTGCCCTTCAG-AATTTGGGACAA  699

seq1  AAGTTCTGTCTAGAATATAGATTGATGGATGCTTGCTTCAGGTTCCAGGA  749
      ||||||||| ||||||||||||||||||||||||||||||  ||||||||
seq2  AAGTTCTGT-TAGAATATAGATTGATGGATGCTTGCTTCA-TTTCCAGGA  747

seq1  AGTAGTCAGTAATAACAACTCAAGCTTCTAAGAACTCCTAGTCCTTTATT  799
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  AGTAGTCAGTAAT-ACAACTCAAGCTTCTAAGAACTCCTAGTCCTTTA-T  795

seq1  AAGCACTTTGAACTTGTTATCATTTCTTTAAATCACACAACACCGGGTGG  849
      ||||||||||||| ||||||||||||| | |||| |||||||||||||||
seq2  AAGCACTTTGAAC-TGTTATCATTTCTCT-AATCCCACAACACCGGGTGG  843

seq1  AAGGTTCTTTTGACACGTTTTATCCATG  877
      || |||||||   ||| |||||||||||
seq2  AAAGTTCTTT--GCACCTTTTATCCATG  869