BAC Information

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BAC

Clone NameB6Ng01-030O02
Chromosome16 (Build37)
Map Location 31,373,252 - 31,500,326
singlet/doubletdoublet
Overlap gene1700007E05Rik, Bdh1
Upstream geneAtp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O02.bB6Ng01-030O02.g
ACCDH860653DH860654
length1,186653
definitionDH860653|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O02, 5' end.DH860654|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,373,252 - 31,374,452)(31,499,675 - 31,500,326)
sequence
gaattcattcaactgtccagagttcagacttctagctattctctcagggc
aagtgcttaaggcacaatggaagcaggaatccagagaaacactgcaaacc
tctcatttgggcagtgtgcactgcccttacacaaatgattccagtaaggc
agctattagaaggtttgctaaggtcagtgtactcatttctgccgcattcg
taggggctaaccctccccagatagtcagtcctaaataccagagatcctta
tatgtggggacctgctctctcatagtaatactgaactctgagctcttgag
tcatggcagccttgtacaccaatattcacatcaacattattcacgacagt
cagaaaatctaaacaacccaaatgactgaggggatgagtgagaaaatgaa
acgggctgcctggatgcaacagaattctttttcagcctcttcaaaaaaaa
aaaatatatatatatatatataattttaaagactggatcttgctacatat
acatagctctggctggcctggaacctgaaaggaatgtaatcctgattcat
ggtacatcatagatagacaaaactaagtgaagcgggcctgatgacaaacg
acagacactgcatggctctgtctgcacgggtccctgagaacagtccaagg
caggctcacagagacctttggtacaatggttcctggaaactggggcagaa
gcagaagggaatcaaaaggatttgtttggtggataaaattgtttcacttt
aggatgacaaaattctggggatagacatagaggtgacaacttgtgtaaca
atgtatacttaaactagtttatgataatgaatgtagctatgtgtagcctc
ccctccccagcctgaaacctgcttgctcaggggtggagcttcctgctcat
tcgttctgccacgcccactgctggaacctgccgctttgctgttgtgccac
cacgtgctcaccctactactggaacccaagattattcagaagggaaacgg
gtcccctccccctttcttcataactagtgtgcaacaataaaattggagct
ttgatcagaatgaatttgtctagccttgtttcttcataccgctgctagtt
ctcctctgcgatcgggtggccctctcactgaacgtactgttgcgagcgtt
gtcagccacaacaatttggcccctacaggacctgaa
gaattctgaatcgcatgcaatcagagaagagcaccctgggtggctctagg
ctcaccaacacaggcttgggagacaagacagtataattgagcactgtccc
tgcatgctcgtgggacccaccagtgctcagcctagctagatctctgcagt
gacatccaggcgtgttctgcattaaatcagagctggtaatttctttcaga
gggaaacagctctgaaatggcatgaaagacaaaaatctgttccttgaaaa
aatgacagcatatgggcctgcgctgctgcagaggggcgagaggcttcgcc
tccctttgttacactcatcaagccgctgatgtgaatgtcagattagcaac
agaaccatatactaacggcacccaaattagctgctaacaaggcactctgg
ctcactccaggcaggcagattgctctgactgtgagagacggaaagcgcct
tagaaaacagtgcttactgatattctcacatctcaaaaaaagatcactcc
ctgctctcagagaattgccagaggaagatggagcccagcctcctgtctgc
ctccatgccaggagccaacaaccaaacccacagattaggaagagacttcc
tccaaaggtgattttggagagttcagaatgttggtgggaaggggtgaggg
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31373252_31374452
seq2: B6Ng01-030O02.b_44_1229

seq1  GAATTCATTCAACTGTCCAGAGTTCAGACTTCTAGCTATTCTCTCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACTGTCCAGAGTTCAGACTTCTAGCTATTCTCTCAGGGC  50

seq1  AAGTGCTTAAGGCACAATGGAAGCAGGAATCCAGAGAAACACTGCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTAAGGCACAATGGAAGCAGGAATCCAGAGAAACACTGCAAACC  100

seq1  TCTCATTTGGGCAGTGTGCACTGCCCTTACACAAATGATTCCAGTAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTGGGCAGTGTGCACTGCCCTTACACAAATGATTCCAGTAAGGC  150

seq1  AGCTATTAGAAGGTTTGCTAAGGTCAGTGTACTCATTTCTGCCGCATTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTAGAAGGTTTGCTAAGGTCAGTGTACTCATTTCTGCCGCATTCG  200

seq1  TAGGGGCTAACCCTCCCCAGATAGTCAGTCCTAAATACCAGAGATCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTAACCCTCCCCAGATAGTCAGTCCTAAATACCAGAGATCCTTA  250

seq1  TATGTGGGGACCTGCTCTCTCATAGTAATACTGAACTCTGAGCTCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGGACCTGCTCTCTCATAGTAATACTGAACTCTGAGCTCTTGAG  300

seq1  TCATGGCAGCCTTGTACACCAATATTCACATCAACATTATTCACGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGCCTTGTACACCAATATTCACATCAACATTATTCACGACAGT  350

seq1  CAGAAAATCTAAACAACCCAAATGACTGAGGGGATGAGTGAGAAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCTAAACAACCCAAATGACTGAGGGGATGAGTGAGAAAATGAA  400

seq1  ACGGGCTGCCTGGATGCAACAGAATTCTTTTTCAGCCTCTTCAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTGCCTGGATGCAACAGAATTCTTTTTCAGCCTCTTCAAAAAAAA  450

seq1  AAAATATATATATATATATATAATTTTAAAGACTGGATCTTGCTACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATATATATATATATAATTTTAAAGACTGGATCTTGCTACATAT  500

seq1  ACATAGCTCTGGCTGGCCTGGAACCTGAAAGGAATGTAATCCTGATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTCTGGCTGGCCTGGAACCTGAAAGGAATGTAATCCTGATTCAT  550

seq1  GGTACATCATAGATAGACAAAACTAAGTGAAGCGGGCCTGATGACAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCATAGATAGACAAAACTAAGTGAAGCGGGCCTGATGACAAACG  600

seq1  ACAGACACTGCATGGCTCTGTCTGCACGGGTCCCTGAGAACAGTCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTGCATGGCTCTGTCTGCACGGGTCCCTGAGAACAGTCCAAGG  650

seq1  CAGGCTCACAGAGACCTTTGGTACAATGGTTCCTGGAAACTGGGGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCACAGAGACCTTTGGTACAATGGTTCCTGGAAACTGGGGCAGAA  700

seq1  GCAGAAGGGAATCAAAAGGATTTGTTTGGTGGATAAAATTGTTTCACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGGAATCAAAAGGATTTGTTTGGTGGATAAAATTGTTTCACTTT  750

seq1  AGGATGACAAAATTCTGGGGATAGACATAGAGGTGACAACTTGTGTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACAAAATTCTGGGGATAGACATAGAGGTGACAACTTGTGTAACA  800

seq1  ATGTATACTTAAAACTAGTTAATGATAATGAATGTAGCTATGTGTAGCCT  850
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  ATGTATACTT-AAACTAGTTTATGATAATGAATGTAGCTATGTGTAGCCT  849

seq1  CCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTC  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCT-CCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCTC  898

seq1  ATTCGTTCTGCCACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTGGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTCGTTCTGCCACGCCCACTGCTGGAACCTGCCGCTTTGCTGTT-GTGC  947

seq1  CACCACGTGCTCACCCTACTACTGG-ACCCAAGATTATTCAG-AGGGAAA  998
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  CACCACGTGCTCACCCTACTACTGGAACCCAAGATTATTCAGAAGGGAAA  997

seq1  CGGGTCCCCTCCCCCTTCCTTCATAACTAGTGTCGCAACAATAAAATTTG  1048
      ||||||||||||||||| ||||||||||||||| |||||||||||||| |
seq2  CGGGTCCCCTCCCCCTTTCTTCATAACTAGTGT-GCAACAATAAAATTGG  1046

seq1  AGCTTTGATCAGAATGAATTTGTCTTAGCTCTGTTTCTTCTATCGCCCTG  1098
      |||||||||||||||||||||||| ||||  ||||||||| ||  | |||
seq2  AGCTTTGATCAGAATGAATTTGTC-TAGCCTTGTTTCTTC-ATACCGCTG  1094

seq1  TCTAGTTCCTCTCTTGCAGCTCGGGTGGCCTTCTCAGTTGAACCGTTCAC  1148
       |||||||  ||| ||| | |||||||||| |||||  |||| ||| |  
seq2  -CTAGTTCTCCTC-TGC-GATCGGGTGGCCCTCTCA-CTGAA-CGTAC-T  1138

seq1  GTTGCGAGCTGCTGGCCAGCCACAACATTTTGGCGCCCGAACAGGGACCT  1198
      |||||||||   | | ||||||||||| ||||  ||||  ||| ||||||
seq2  GTTGCGAGC--GTTGTCAGCCACAACAATTTG--GCCCCTACA-GGACCT  1183

seq1  GAA  1201
      |||
seq2  GAA  1186

seq1: chr16_31499675_31500326
seq2: B6Ng01-030O02.g_68_720 (reverse)

seq1  CCTCCCTCACCCCTTCCCACCAACATTCTGAACTCTCC-AAATCACCTTT  49
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTCCCTCACCCCTTCCCACCAACATTCTGAACTCTCCAAAATCACCTTT  50

seq1  GGAGGAAGTCTCTTCCTAATCTGTGGGTTTGGTTGTTGGCTCCTGGCATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTCTCTTCCTAATCTGTGGGTTTGGTTGTTGGCTCCTGGCATG  100

seq1  GAGGCAGACAGGAGGCTGGGCTCCATCTTCCTCTGGCAATTCTCTGAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGACAGGAGGCTGGGCTCCATCTTCCTCTGGCAATTCTCTGAGAG  150

seq1  CAGGGAGTGATCTTTTTTTGAGATGTGAGAATATCAGTAAGCACTGTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGATCTTTTTTTGAGATGTGAGAATATCAGTAAGCACTGTTTT  200

seq1  CTAAGGCGCTTTCCGTCTCTCACAGTCAGAGCAATCTGCCTGCCTGGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCGCTTTCCGTCTCTCACAGTCAGAGCAATCTGCCTGCCTGGAGT  250

seq1  GAGCCAGAGTGCCTTGTTAGCAGCTAATTTGGGTGCCGTTAGTATATGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGTGCCTTGTTAGCAGCTAATTTGGGTGCCGTTAGTATATGGT  300

seq1  TCTGTTGCTAATCTGACATTCACATCAGCGGCTTGATGAGTGTAACAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTAATCTGACATTCACATCAGCGGCTTGATGAGTGTAACAAAG  350

seq1  GGAGGCGAAGCCTCTCGCCCCTCTGCAGCAGCGCAGGCCCATATGCTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGAAGCCTCTCGCCCCTCTGCAGCAGCGCAGGCCCATATGCTGTC  400

seq1  ATTTTTTCAAGGAACAGATTTTTGTCTTTCATGCCATTTCAGAGCTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAGGAACAGATTTTTGTCTTTCATGCCATTTCAGAGCTGTTT  450

seq1  CCCTCTGAAAGAAATTACCAGCTCTGATTTAATGCAGAACACGCCTGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAAAGAAATTACCAGCTCTGATTTAATGCAGAACACGCCTGGAT  500

seq1  GTCACTGCAGAGATCTAGCTAGGCTGAGCACTGGTGGGTCCCACGAGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCAGAGATCTAGCTAGGCTGAGCACTGGTGGGTCCCACGAGCAT  550

seq1  GCAGGGACAGTGCTCAATTATACTGTCTTGTCTCCCAAGCCTGTGTTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACAGTGCTCAATTATACTGTCTTGTCTCCCAAGCCTGTGTTGGT  600

seq1  GAGCCTAGAGCCACCCAGGGTGCTCTTCTCTGATTGCATGCGATTCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGAGCCACCCAGGGTGCTCTTCTCTGATTGCATGCGATTCAGAA  650

seq1  TTC  652
      |||
seq2  TTC  653