BAC Information

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BAC

Clone NameB6Ng01-032F09
Chromosome16 (Build37)
Map Location 88,723,422 - 88,783,050
singlet/doubletdoublet
Overlap geneKrtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik
Downstream geneEG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F09.bB6Ng01-032F09.g
ACCDH861705DH861706
length1,182840
definitionDH861705|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F09, 5' end.DH861706|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,723,422 - 88,724,624)(88,782,211 - 88,783,050)
sequence
gaattcaaaacgtaatcaacaaaatgaagtgatacatgcttaagtagggt
gttatgctaatggccctgacttgatcatcagacattatataagggtgagg
ataaaacacatagtgcccccatagagatgagcagatattatgcacagatt
aaaatgtatgatataactgaataaaaaaagtctttatggaacacttcact
gtatatagtttatataagaaaataatgttaaacatatcaagaacccaatt
cattagtaagtaaaaaacaggagaggaacatcctggctgttgggggtttg
gccaatctgctacaaaactggggcatcatctctgcctctattccccagtg
caaagctctgcccaccaaacaggaagaagtacaatccaaatggaggggaa
attggagctctgctctgttctgaagctattcctggctaggacttgagctt
tcccaggtaaactgatgaaagaaagaaattggagtatccagctgaggcct
ctcattccaaccatctgagcctcagacaaagcaggaagagtcccacccct
cttcctctgtaccacattttctctgctccctcacccatgacttctctctt
gctctcctcctctttctctctctccttcttgccccctccttcttctcctc
cttctttgctcttcccttttccctctgtcccttctctaccctcccttcct
ccttatcttcctcactcatttcttcttctgtctcttttccttttccctct
ctcctacccactttctttaaggtcacctatcttaccctgacaaatatata
cagaataagcatgacacttgctctttgtgcccatgcatcttactacaatt
ctctgccatgattcttttaaaagtagagcagatggttatacctcagggtc
aggaaaaggtcagatcctcagagtactcaaggcagggaaagtcacctttt
atactccctctaatttgtatcttgttgcttctcctaggactaagtagaat
atatctcctggttgtaccaattctattgctgcttcttacttctgagcagg
aagtacaagcagttactagaatcaatcaccttcactcagcctgttcagaa
attgaagaatgcgaagtacttgatatgacgacaacatttatacagtggaa
accctaccacctcagtggccttcttgttctgt
gaattctcctagccagcccacttggctcctagtgtctcccattattcttg
ttagagatcatgctttggtaccggatcctgaggaattgactgttttcttt
attctcagcttatcaaagtcttgtcctgtagcttttgatttcctgctgtg
tccctatctctgtcctctcattaatagctccattcaccctcaggttggat
taatgtctaattcccaagtatggctggctgactgtactctttaaatacat
atatttggttttcatccaggagcacctgaaaatggaatgtttaatccaat
aaattggtacaagttgacatgacaatatattgttcctattattattatgt
tgggtttagtttctgaatttacatatttaggagacaataaagatgaatat
atttccttaattgtactttgtgaccaaagtaacatattttgtttttgttg
ttgtcattggatatgttcctttatgaaggagttgttaataataggaagac
tgtcatatctattgcaaatcaggctcaaaaacaatgatgattgcctgaga
tttaacaatatgatttttttttttttgctgatccagggaaatagaataat
aaaaatttaaaataaaaatttcaccatcaatagtatggtatacattttat
tgggttccatataaaaaaagacaaaaatatttaaatctagtgtgtgaaag
gaagttgtcagccaactgaaaagcttggaaattttcttaataatgctgac
atcctcatctgctatgctactgtggtgtgggaaccattcctgagcctttt
gttttttgttttttgggttttgtttgtttgtttgtttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88723422_88724624
seq2: B6Ng01-032F09.b_46_1227

seq1  GAATTCAAAACGTAATCAACAAAATGAAGTGATACATGCTTAAGTAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACGTAATCAACAAAATGAAGTGATACATGCTTAAGTAGGGT  50

seq1  GTTATGCTAATGGCCCTGACTTGATCATCAGACATTATATAAGGGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTAATGGCCCTGACTTGATCATCAGACATTATATAAGGGTGAGG  100

seq1  ATAAAACACATAGTGCCCCCATAGAGATGAGCAGATATTATGCACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACATAGTGCCCCCATAGAGATGAGCAGATATTATGCACAGATT  150

seq1  AAAATGTATGATATAACTGAATAAAAAAAGTCTTTATGGAACACTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATGATATAACTGAATAAAAAAAGTCTTTATGGAACACTTCACT  200

seq1  GTATATAGTTTATATAAGAAAATAATGTTAAACATATCAAGAACCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTTTATATAAGAAAATAATGTTAAACATATCAAGAACCCAATT  250

seq1  CATTAGTAAGTAAAAAACAGGAGAGGAACATCCTGGCTGTTGGGGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTAAGTAAAAAACAGGAGAGGAACATCCTGGCTGTTGGGGGTTTG  300

seq1  GCCAATCTGCTACAAAACTGGGGCATCATCTCTGCCTCTATTCCCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTGCTACAAAACTGGGGCATCATCTCTGCCTCTATTCCCCAGTG  350

seq1  CAAAGCTCTGCCCACCAAACAGGAAGAAGTACAATCCAAATGGAGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTGCCCACCAAACAGGAAGAAGTACAATCCAAATGGAGGGGAA  400

seq1  ATTGGAGCTCTGCTCTGTTCTGAAGCTATTCCTGGCTAGGACTTGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCTCTGCTCTGTTCTGAAGCTATTCCTGGCTAGGACTTGAGCTT  450

seq1  TCCCAGGTAAACTGATGAAAGAAAGAAATTGGAGTATCCAGCTGAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTAAACTGATGAAAGAAAGAAATTGGAGTATCCAGCTGAGGCCT  500

seq1  CTCATTCCAACCATCTGAGCCTCAGACAAAGCAGGAAGAGTCCCACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAACCATCTGAGCCTCAGACAAAGCAGGAAGAGTCCCACCCCT  550

seq1  CTTCCTCTGTACCACATTTTCTCTGCTCCCTCACCCATGACTTCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGTACCACATTTTCTCTGCTCCCTCACCCATGACTTCTCTCTT  600

seq1  GCTCTCCTCCTCTTTCTCTCTCTCCTTCTTGCCCCCTCCTTCTTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCTCTTTCTCTCTCTCCTTCTTGCCCCCTCCTTCTTCTCCTC  650

seq1  CTTCTTTGCTCTTCCCTTTTCCCTCTGTCCCTTCTCTACCCTCCCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCTCTTCCCTTTTCCCTCTGTCCCTTCTCTACCCTCCCTTCCT  700

seq1  CCTTATCTTCCTCACTCATTTCTTCTTCTGTCTCTTTTCC-TTTCCCTCT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTATCTTCCTCACTCATTTCTTCTTCTGTCTCTTTTCCTTTTCCCTCT  750

seq1  CTCCTACCCACTTTCTTTAAGGTCACCTATCTTACCCTGACAAATATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCCACTTTCTTTAAGGTCACCTATCTTACCCTGACAAATATATA  800

seq1  CAGAATAAGCATGACACTTGCTCTTTGTGCCCATGCATCTTACTACAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAGCATGACACTTGCTCTTTGTGCCCATGCATCTTACTACAATT  850

seq1  CTCTGCCATGATTCTTTTAAAAGTAGAGCAGATGGTTATACCTCAGGGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATGATTCTTTTAAAAGTAGAGCAGATGGTTATACCTCAGGGTC  900

seq1  AGGAAAAGGTCAGATCCCCAGAGTAC-CAAGGCAGGGAAAGTCACCTTTT  948
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AGGAAAAGGTCAGATCCTCAGAGTACTCAAGGCAGGGAAAGTCACCTTTT  950

seq1  ATACTCCCTCTTATTTTGTATCTTGTTGCTTCTCCTAGGACTAAGTAGAA  998
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCTC-TAATTTGTATCTTGTTGCTTCTCCTAGGACTAAGTAGAA  999

seq1  TATATCTCCTGGTTTGTACCCAATTCCTATTGCTGCTTCTTACTTCTGAG  1048
      |||||||||||| ||||| |||||| ||||||||||||||||||||||||
seq2  TATATCTCCTGG-TTGTA-CCAATT-CTATTGCTGCTTCTTACTTCTGAG  1046

seq1  CAGGGAAGTTACACAGCCAGTTACTAGATACAATCACCCTTCACTCAG-C  1097
      || ||||||   |||  |||||||||||  |||||| ||||||||||| |
seq2  CA-GGAAGT---ACAAGCAGTTACTAGAATCAATCA-CCTTCACTCAGCC  1091

seq1  TGTCCAAGGAAAATGAAGAAATGCGAAGTACTTGATATTGACAGAACCAA  1147
      ||| ||  |||| ||||| |||||||||||||||||| |||| ||  |||
seq2  TGTTCA--GAAATTGAAG-AATGCGAAGTACTTGATA-TGAC-GA--CAA  1134

seq1  CATGTTTATTTCACGTGAAACACCTACCAGCTACAAGTTGTCCCTTCTTG  1197
      ||| | ||   || ||| ||  ||||||| ||   ||| |  ||||||||
seq2  CATTTATA---CA-GTGGAAACCCTACCACCT--CAGTGG--CCTTCTTG  1176

seq1  TTCTGT  1203
      ||||||
seq2  TTCTGT  1182

seq1: chr16_88782211_88783050
seq2: B6Ng01-032F09.g_66_905 (reverse)

seq1  AACAAACAAACAAACAAACAAAACCCAAAAAACAAAAAACAAAAGGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAAACCCAAAAAACAAAAAACAAAAGGCTCA  50

seq1  GGAATGGTTCCCACACCACAGTAGCATAGCAGATGAGGATGTCAGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTTCCCACACCACAGTAGCATAGCAGATGAGGATGTCAGCATTA  100

seq1  TTAAGAAAATTTCCAAGCTTTTCAGTTGGCTGACAACTTCCTTTCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAATTTCCAAGCTTTTCAGTTGGCTGACAACTTCCTTTCACACA  150

seq1  CTAGATTTAAATATTTTTGTCTTTTTTTATATGGAACCCAATAAAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTAAATATTTTTGTCTTTTTTTATATGGAACCCAATAAAATGTA  200

seq1  TACCATACTATTGATGGTGAAATTTTTATTTTAAATTTTTATTATTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATACTATTGATGGTGAAATTTTTATTTTAAATTTTTATTATTCTAT  250

seq1  TTCCCTGGATCAGCAAAAAAAAAAAAATCATATTGTTAAATCTCAGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGATCAGCAAAAAAAAAAAAATCATATTGTTAAATCTCAGGCAA  300

seq1  TCATCATTGTTTTTGAGCCTGATTTGCAATAGATATGACAGTCTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGTTTTTGAGCCTGATTTGCAATAGATATGACAGTCTTCCTAT  350

seq1  TATTAACAACTCCTTCATAAAGGAACATATCCAATGACAACAACAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAACTCCTTCATAAAGGAACATATCCAATGACAACAACAAAAAC  400

seq1  AAAATATGTTACTTTGGTCACAAAGTACAATTAAGGAAATATATTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTTACTTTGGTCACAAAGTACAATTAAGGAAATATATTCATCT  450

seq1  TTATTGTCTCCTAAATATGTAAATTCAGAAACTAAACCCAACATAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCTCCTAAATATGTAAATTCAGAAACTAAACCCAACATAATAAT  500

seq1  AATAGGAACAATATATTGTCATGTCAACTTGTACCAATTTATTGGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAACAATATATTGTCATGTCAACTTGTACCAATTTATTGGATTAA  550

seq1  ACATTCCATTTTCAGGTGCTCCTGGATGAAAACCAAATATATGTATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATTTTCAGGTGCTCCTGGATGAAAACCAAATATATGTATTTAA  600

seq1  AGAGTACAGTCAGCCAGCCATACTTGGGAATTAGACATTAATCCAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACAGTCAGCCAGCCATACTTGGGAATTAGACATTAATCCAACCTG  650

seq1  AGGGTGAATGGAGCTATTAATGAGAGGACAGAGATAGGGACACAGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAATGGAGCTATTAATGAGAGGACAGAGATAGGGACACAGCAGGA  700

seq1  AATCAAAAGCTACAGGACAAGACTTTGATAAGCTGAGAATAAAGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGCTACAGGACAAGACTTTGATAAGCTGAGAATAAAGAAAACA  750

seq1  GTCAATTCCTCAGGATCCGGTACCAAAGCATGATCTCTAACAAGAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCCTCAGGATCCGGTACCAAAGCATGATCTCTAACAAGAATAAT  800

seq1  GGGAGACACTAGGAGCCAAGTGGGCTGGCTAGGAGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACACTAGGAGCCAAGTGGGCTGGCTAGGAGAATTC  840