BAC Information

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BAC

Clone NameB6Ng01-034M19
Chromosome16 (Build37)
Map Location 52,294,120 - 52,453,765
singlet/doubletdoublet
Overlap geneAlcam
Upstream geneLOC627543, Cblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M19.bB6Ng01-034M19.g
ACCDH863446DH863447
length1,053944
definitionDH863446|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M19, 5' end.DH863447|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,294,120 - 52,295,179)(52,452,821 - 52,453,765)
sequence
gaattcttccatccatcttccttgaaatgtcctcttctatcatttagacc
tttcctctgaagtccctctacagcagtggttttccacatcggctccattt
atcatcagtaatattactatgttattttttagtagtaaattcactatgca
gcatctctttacctgcgctggattgttctactcgaggaaagtccagcaat
ctgtgttctagcaaatccttcatattccactaatgtcttcaagagtctca
gaatcactgtccttgggcacctgacctttcaggaacagcccttctgttcc
cgtgacatttatcacttgcgacaccacactgacaaattccttctgatgta
agtgtcttgattctcagctggaataataacctctttgaatgagcagtgtc
gtaccatcatcaagaagttcaatagtgcctttgttgtcttctaattgcca
aacactctccccacatgcctgtggcattgctgtgtcaatctcatggatcc
aaggattcatctaccaacccatctgtctccctgccaatcacatacatacc
agttccttctgaagccaacttcacaagtcttatacaccttggtaatgcta
aacttaggaagttagccaggcatacggcaatattcacctttttctaattt
tgttttaggaaatggtcaggaggcattaggaattcctataaaacacatgg
caataagctatggctggagagtgttggaagtaatcgtttaagttagaggt
caaatctataagaaacatagcacaccatagagaaccaaacacatatttgt
aaatgagatagcaggaaatggagtctattcttaagtcatgagcagttttt
ttctatagattttccaaggaagaaagattatttgtgtatcagagttttgt
gataaggattggcagcagaatattaagaagaactgaatgaggcttggtgg
agatttaagtatttgaatatatttctaatacattaatctaacaattataa
ttgggtacttacggcaaatatcaaagatttcttgttcggataaatttttt
ctg
aaggagtaaccttctcttcaaagtgggggaaattactctcaaccaccagt
agctgtttccgtgagcctccgggtggagaatctccatcttttccacctcc
tcagtcctagtccaagaggacccaaggtgagctcttcgccccaacaactc
tacagaaggtgaaggcggtaccctcgtcgagaagaaaaatccctaaggag
tgagccagtggactgggcttcggagtgcaagaagacagctatgtggccag
gctgggaggacagcaaaagatctcagatcctatgtctttggggcgctgag
aatcccctggtaagagccagacactggcgaatccagcccgtcacgccccc
tactctcgatcccgctcttcattggccagcgtgtcctgtgggaggcggag
tcgatgtcagccccgcccaccagagcgcgggggctggggcatcaggctct
tctcccaccaggggccgccagctctgctcagtctccgacttggtcctgca
gcgcctctaggctgcggatcggcgctccaaccacctgctccgcgctgccg
ccgaggaagctgggcgggagagaggagcgggaggagcaggaggagcggga
ggagcgggaggaggagacaggcagcttacacacgccttcccgtcctccac
tcagagcagccggagcccgcggccgccgccactgctcccagctgccgccg
ctacagcctctgcctcggctgccacctgaggagacccaccgtcgggaccc
cgcggcgctgccccgccgacccttctctgctcccggtgatccgtgcacgg
tgcaactctcatcactcttcttatcctctcctttgcagaagagaaactac
tagaagacagcttccaaaagaaaccgcgtctaccatgactgactactgaa
gcgtctcctgggaataaaagggtcgcccttcctggtatagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52294120_52295179
seq2: B6Ng01-034M19.b_46_1098

seq1  GAATTCTTCCATCCATCTTCCTTGAAATGTCCTCTTCTATCATTTAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCATCCATCTTCCTTGAAATGTCCTCTTCTATCATTTAGACC  50

seq1  TTTCCTCTGAAGTCCCTCTACAGCAGTGGTTTTCCACATCGGCTCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGAAGTCCCTCTACAGCAGTGGTTTTCCACATCGGCTCCATTT  100

seq1  ATCATCAGTAATATTACTATGTTATTTTTTAGTAGTAAATTCACTATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGTAATATTACTATGTTATTTTTTAGTAGTAAATTCACTATGCA  150

seq1  GCATCTCTTTACCTGCGCTGGATTGTTCTACTCGAGGAAAGTCCAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTTTACCTGCGCTGGATTGTTCTACTCGAGGAAAGTCCAGCAAT  200

seq1  CTGTGTTCTAGCAAATCCTTCATATTCCACTAATGTCTTCAAGAGTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTAGCAAATCCTTCATATTCCACTAATGTCTTCAAGAGTCTCA  250

seq1  GAATCACTGTCCTTGGGCACCTGACCTTTCAGGAACAGCCCTTCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTGTCCTTGGGCACCTGACCTTTCAGGAACAGCCCTTCTGTTCC  300

seq1  CGTGACATTTATCACTTGCGACACCACACTGACAAATTCCTTCTGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACATTTATCACTTGCGACACCACACTGACAAATTCCTTCTGATGTA  350

seq1  AGTGTCTTGATTCTCAGCTGGAATAATAACCTCTTTGAATGAGCAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTGATTCTCAGCTGGAATAATAACCTCTTTGAATGAGCAGTGTC  400

seq1  GTACCATCATCAAGAAGTTCAATAGTGCCTTTGTTGTCTTCTAATTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCATCAAGAAGTTCAATAGTGCCTTTGTTGTCTTCTAATTGCCA  450

seq1  AACACTCTCCCCACATGCCTGTGGCATTGCTGTGTCAATCTCATGGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTCCCCACATGCCTGTGGCATTGCTGTGTCAATCTCATGGATCC  500

seq1  AAGGATTCATCTACCAACCCATCTGTCTCCCTGCCAATCACATACATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCATCTACCAACCCATCTGTCTCCCTGCCAATCACATACATACC  550

seq1  AGTTCCTTCTGAAGCCAACTTCACAAGTCTTATACACCTTGGTAATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTCTGAAGCCAACTTCACAAGTCTTATACACCTTGGTAATGCTA  600

seq1  AACTTAGGAAGTTAGCCAGGCATACGGCAATATTCACCTTTTTCTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGAAGTTAGCCAGGCATACGGCAATATTCACCTTTTTCTAATTT  650

seq1  TGTTTTAGGAAATGGTCAGGAGGCATTAGGAATTCCTATAAAACACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGGAAATGGTCAGGAGGCATTAGGAATTCCTATAAAACACATGG  700

seq1  CAATAAGCTATGGCTGGAGAGTGTTGGAAGTAATCGTTTAAGTTAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCTATGGCTGGAGAGTGTTGGAAGTAATCGTTTAAGTTAGAGGT  750

seq1  CAAATCTATAAGAAACATAGCACACCATAGAGAACCAAACACATATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATAAGAAACATAGCACACCATAGAGAACCAAACACATATTTGT  800

seq1  AAATGAGATAGCAGGAAATGGAGTCTATTCTTAAGTCATGAGCAGTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATAGCAGGAAATGGAGTCTATTCTTAAGTCATGAGCAGTTTTT  850

seq1  TTCTATAGATTTTCCAAGGAAGAAAAGATTATTTGTGTATCAGAGTTTTG  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTATAGATTTTCCAAGGAAG-AAAGATTATTTGTGTATCAGAGTTTTG  899

seq1  TGATAAGGATTGGCAGCAGAATATTAAGAGAAACTGAATGAGGCTT-GTG  949
      |||||||||||||||||||||||||||||  ||||||||||||||| |||
seq2  TGATAAGGATTGGCAGCAGAATATTAAGAAGAACTGAATGAGGCTTGGTG  949

seq1  GAGATTTAAGGTATTTGAATATTATTTCTAATACATTAAATCTATACAAT  999
      ||||||||| ||||||||||| ||||||||||||||| |||||| |||||
seq2  GAGATTTAA-GTATTTGAATA-TATTTCTAATACATT-AATCTA-ACAAT  995

seq1  TATAATTTGGGTACTTACAGTAAATATCAAAGATTTCTTGTTCGGAATAA  1049
      ||||| |||||||||||| | |||||||||||||||||||||||| ||||
seq2  TATAA-TTGGGTACTTACGGCAAATATCAAAGATTTCTTGTTCGG-ATAA  1043

seq1  ATTGTTTTCTG  1060
      ||| |||||||
seq2  ATT-TTTTCTG  1053

seq1: chr16_52452821_52453765
seq2: B6Ng01-034M19.g_78_1021 (reverse)

seq1  GCAGCTACTCCCAGGACGGGCGACCCTCTTATT-CCAGGAGACGCTTCAG  49
      ||||||| | |||||| |||||||||| ||||| ||||||||||||||||
seq2  GCAGCTA-TACCAGGAAGGGCGACCCTTTTATTCCCAGGAGACGCTTCAG  49

seq1  TAGTCAGTCAAGGTAGACGCGGTTTCTTTTTGGATGCTGTCTTCTAGTAG  99
      |||||||||| ||||||||||||||| ||||||| |||||||||||||||
seq2  TAGTCAGTCATGGTAGACGCGGTTTC-TTTTGGAAGCTGTCTTCTAGTAG  98

seq1  TTTCTCTTCTTGCAAAGGAGAGGATAAGAAGAGTGATGAGAGTTGCACCG  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTC-TGCAAAGGAGAGGATAAGAAGAGTGATGAGAGTTGCACCG  147

seq1  TGCACGGATCACCGGGAGCAGAGAAGGGTCGGCGGGGCAGCGCCGCGGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGATCACCGGGAGCAGAGAAGGGTCGGCGGGGCAGCGCCGCGGGG  197

seq1  TCCCGACGGTGGGTCTCCTCAGGTGGCAGCCGAGGCAGAGGCTGTAGCGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGACGGTGGGTCTCCTCAGGTGGCAGCCGAGGCAGAGGCTGTAGCGG  247

seq1  CGGCAGCT-GGAGCAGTGGCGGCGGCCGCGGGCTCCGGCTGCTCTGAGTG  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCTGGGAGCAGTGGCGGCGGCCGCGGGCTCCGGCTGCTCTGAGTG  297

seq1  GAGGACGGGAAGGCGTGTGTAAGCTGCCTGTCTCCTCCTCCCGCTCCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGGGAAGGCGTGTGTAAGCTGCCTGTCTCCTCCTCCCGCTCCTCC  347

seq1  CGCTCCTCCTGCTCCTCCCGCTCCTCTCTCCCGCCCAGCTTCCTCGGCGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCTCCTGCTCCTCCCGCTCCTCTCTCCCGCCCAGCTTCCTCGGCGG  397

seq1  CAGCGCGGAGCAGGTGGTTGGAGCGCCGATCCGCAGCCTAGAGGCGCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCGGAGCAGGTGGTTGGAGCGCCGATCCGCAGCCTAGAGGCGCTGC  447

seq1  AGGACCAAGTCGGAGACTGAGCAGAGCTGGCGGCCCCTGGTGGGAGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAAGTCGGAGACTGAGCAGAGCTGGCGGCCCCTGGTGGGAGAAGA  497

seq1  GCCTGATGCCCCAGCCCCCGCGCTCTGGTGGGCGGGGCTGACATCGACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGCCCCAGCCCCCGCGCTCTGGTGGGCGGGGCTGACATCGACTC  547

seq1  CGCCTCCCACAGGACACGCTGGCCAATGAAGAGCGGGATCGAGAGTAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCCACAGGACACGCTGGCCAATGAAGAGCGGGATCGAGAGTAGGG  597

seq1  GGCGTGACGGGCTGGATTCGCCAGTGTCTGGCTCTTACCAGGGGATTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGACGGGCTGGATTCGCCAGTGTCTGGCTCTTACCAGGGGATTCTC  647

seq1  AGCGCCCCAAAGACATAGGATCTGAGATCTTTTGCTGTCCTCCCAGCCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCCAAAGACATAGGATCTGAGATCTTTTGCTGTCCTCCCAGCCTG  697

seq1  GCCACATAGCTGTCTTCTTGCACTCCGAAGCCCAGTCCACTGGCTCACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATAGCTGTCTTCTTGCACTCCGAAGCCCAGTCCACTGGCTCACTC  747

seq1  CTTAGGGATTTTTCTTCTCGACGAGGGTACCGCCTTCACCTTCTGTAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGATTTTTCTTCTCGACGAGGGTACCGCCTTCACCTTCTGTAGAG  797

seq1  TTGTTGGGGCGAAGAGCTCACCTTGGGTCCTCTTGGACTAGGACTGAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGGCGAAGAGCTCACCTTGGGTCCTCTTGGACTAGGACTGAGGA  847

seq1  GGTGGAAAAGATGGAGATTCTCCACCCGGAGGCTCACGGAAACAGCTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAAGATGGAGATTCTCCACCCGGAGGCTCACGGAAACAGCTACT  897

seq1  GGTGGTTGAGAGTAATTTCCCCCACTTTGAAGAGAAGGTTACTCCTT  945
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGAGAGTAATTTCCCCCACTTTGAAGAGAAGGTTACTCCTT  944