BAC Information

Click to search

BAC

Clone NameB6Ng01-036I10
Chromosome16 (Build37)
Map Location 45,221,784 - 45,364,645
singlet/doubletdoublet
Overlap geneBtla
Upstream geneGm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036I10.bB6Ng01-036I10.g
ACCDH864672DH864673
length1,090571
definitionDH864672|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I10, 5' end.DH864673|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,363,539 - 45,364,645)(45,221,784 - 45,222,358)
sequence
gaattcagtcactagcagatgtgttttgcttggtatatgaagtgttggat
aacatttggaaatttcctataaaagtataaattccttgattttggaaata
aaaagttactccagtgtgcccctgcttggccagttgtctgactccaacat
aacccccccccacacacacacacacacacatacacaagcagcagttagac
tttgctagagcccaccacatcttgttgttttatctatgagaggaaagtca
ttccttttggttaactgcctggatactctagagactggatttgtaccttc
tgatccacaggaattaaaacatatctggattgcaggcactgcctcctcca
ggaagctccctgggagatccactccaccctttagatctcttgctttcctc
ccttggagcttgtctatcctgactcctggcaccaccaagcatgctgagta
cagctttagttcttctgaaccttgcgtgttcaacatgatgaagatacctg
actggcaggcagatcaggtcttccccagctcagtgtgaacttctgatata
tccctcagaaaacacttccagagacttgtttggtttctcacagttgagga
aacgtgcatcagtcacatccttagatttcccttcagaggatgattgactt
ttggaacttacagttaggcacgcaacaatggaacaagtccatataaacaa
acattttttcctcaaatccaggaaatatgacggatgagataaattgaatt
ccagagcaatgggacaaagcattatttacataaaccaaattctctctatg
tggctacctataagatgtaaacatctggagcagatttatggtgtatacac
atgttcttctccccactcaagcacatcctctcctctctcttccactttca
gattcccaagctaatatgtattagcacttctcagcttcatacttttgaat
taatttgggaacatttgtgtgatcttttcttcgtgccctgcaagacaaaa
tctatgttttgtttgtttttctgtatcaccagtagcttcagaactaggca
atagtgttgaaattttcgttgactggagtgctctaattta
agtaggctaagggcaggctgtagggttcatcgtcattttctaacttgtat
tctggctggtttgataggcaccactgctagcaataacattggtaaggaaa
gcacatacatgcattagcacggcagtgggtttaaatgtggataggtactt
ctgggagaagctatggaatattatttggtacataaggggttaaaaatcaa
gactaaggagtgtttgactctgtctaacattgttgtatttaagtttgtga
ttgctgctcttctggtcacctggagaaaatattacagaaaataaagctgc
tttataattcctgaaagtaacagactcagcaagtgaggaaaataatttgc
tatgcaagcagctcttggatttttgtgaagataaatttgcattttcccaa
attccatttttctttttgtcattcaacatgaaactggcaatggacttgtg
tttttaaaactgttcctagcatacaaaagaaagcatttctaggaatgcag
taaactcattaaaatttgtgcattgacatggaaaattacaagtttcggat
taaacagtacatgattataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45363539_45364645
seq2: B6Ng01-036I10.b_45_1134 (reverse)

seq1  TAAATTTGGAGCAACTCCAGTCAAACGAACATTTATCAAACACTATGTGC  50
      |||| || |||| ||||||||| |||||| ||||    |||||||| |||
seq2  TAAA-TTAGAGC-ACTCCAGTC-AACGAAAATTT---CAACACTAT-TGC  43

seq1  CTAGTTCTGATAGCTACTGGTGATAAACAGAAAAAACAAAACAAAACATA  100
      |||||||||| |||||||||||||  |||||||||   ||||||||||||
seq2  CTAGTTCTGA-AGCTACTGGTGAT--ACAGAAAAA--CAAACAAAACATA  88

seq1  GATTTTGTCTTGCAGGGCAACCGAAGGAAAAGATCACACAAATGTTCCCA  150
      |||||||||||||||||||  |||| ||||||||||||||||||||||||
seq2  GATTTTGTCTTGCAGGGCA--CGAA-GAAAAGATCACACAAATGTTCCCA  135

seq1  AATTAAATACAAAAGTATGAAGCTGGAGAAGTGCTAGTACATATTAGCTT  200
      |||| ||| ||||||||||||||| ||||||||||| |||||||||||||
seq2  AATT-AATTCAAAAGTATGAAGCT-GAGAAGTGCTAATACATATTAGCTT  183

seq1  GGGGAATCTGAAAGTGGAAGAGAGAGGAGAGGATGTGCTTGAGTGGGGAG  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGAATCTGAAAGTGGAAGAGAGAGGAGAGGATGTGCTTGAGTGGGGAG  232

seq1  AAGAACATGTGTATACA-CATAACATCTGCTCCAGATGTTTACATCTTAT  299
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  AAGAACATGTGTATACACCATAA-ATCTGCTCCAGATGTTTACATCTTAT  281

seq1  AGGTAGCCACATAGAGAGAATTTGGTTTATGTAAATAATGCTTTGTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCACATAGAGAGAATTTGGTTTATGTAAATAATGCTTTGTCCCA  331

seq1  TTGCTCTGGAATTCAATTTATCTCATCCGTCATATTTCCTGGATTTGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGGAATTCAATTTATCTCATCCGTCATATTTCCTGGATTTGAGG  381

seq1  AAAAAATGTTTTGTTTATATGGACTTGTTCCATTGTTGCGTGCCTAACTG  449
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATG-TTTGTTTATATGGACTTGTTCCATTGTTGCGTGCCTAACTG  430

seq1  TAAGTTCC-AAAGTCAATCATCCTCTGAAGGG-AATCTAAGGATGTGACT  497
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTTCCAAAAGTCAATCATCCTCTGAAGGGAAATCTAAGGATGTGACT  480

seq1  GATGCACGTTTCCTCAACTGTGAGAAACCAAACAAGTCTCTGGAAGTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACGTTTCCTCAACTGTGAGAAACCAAACAAGTCTCTGGAAGTGTT  530

seq1  TTCTGAGGGATATATCAGAAGTTCACACTGAGCTGGGGAAGACCTGATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGGATATATCAGAAGTTCACACTGAGCTGGGGAAGACCTGATCT  580

seq1  GCCTGCCAGTCAGGTATCTTCATCATGTTGAACACGCAAGGTTCAGAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAGTCAGGTATCTTCATCATGTTGAACACGCAAGGTTCAGAAGA  630

seq1  ACTAAAGCTGTACTCAGCATGCTTGGTGGTGCCAGGAGTCAGGATAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCTGTACTCAGCATGCTTGGTGGTGCCAGGAGTCAGGATAGACA  680

seq1  AGCTCCAAGGGAGGAAAGCAAGAGATCTAAAGGGTGGAGTGGATCTCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGGGAGGAAAGCAAGAGATCTAAAGGGTGGAGTGGATCTCCCA  730

seq1  GGGAGCTTCCTGGAGGAGGCAGTGCCTGCAATCCAGATATGTTTTAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTCCTGGAGGAGGCAGTGCCTGCAATCCAGATATGTTTTAATTC  780

seq1  CTGTGGATCAGAAGGTACAAATCCAGTCTCTAGAGTATCCAGGCAGTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATCAGAAGGTACAAATCCAGTCTCTAGAGTATCCAGGCAGTTAA  830

seq1  CCAAAAGGAATGACTTTCCTCTCATAGATAAAACAACAAGATGTGGTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGAATGACTTTCCTCTCATAGATAAAACAACAAGATGTGGTGGG  880

seq1  CTCTAGCAAAGTCTAACTGCTGCTTGTGTATGTGTGTGTGTGTGTGTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAAAGTCTAACTGCTGCTTGTGTATGTGTGTGTGTGTGTGTGTG  930

seq1  GGGGGGGGTTATGTTGGAGTCAGACAACTGGCCAAGCAGGGGCACACTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTTATGTTGGAGTCAGACAACTGGCCAAGCAGGGGCACACTGG  980

seq1  AGTAACTTTTTATTTCCAAAATCAAGGAATTTATACTTTTATAGGAAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTTATTTCCAAAATCAAGGAATTTATACTTTTATAGGAAATT  1030

seq1  TCCAAATGTTATCCAACACTTCATATACCAAGCAAAACACATCTGCTAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTTATCCAACACTTCATATACCAAGCAAAACACATCTGCTAGT  1080

seq1  GACTGAATTC  1107
      ||||||||||
seq2  GACTGAATTC  1090

seq1: chr16_45221784_45222358
seq2: B6Ng01-036I10.g_67_643

seq1  GAATTCAGTAGGCTAAGGGCAGGCTGTAGGGTTCATCGTCATTTTCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGCTAAGGGCAGGCTGTAGGGTTCATCGTCATTTTCTAAC  50

seq1  TTGTATTCTGGCTGGTTTGATAGGCACCACTGCTAGCAATAACATTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTGGCTGGTTTGATAGGCACCACTGCTAGCAATAACATTGGTA  100

seq1  AGGAAAGCACATACATGCATTAGCACGGCAGTGGGTTTAAATGTGGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCACATACATGCATTAGCACGGCAGTGGGTTTAAATGTGGATAG  150

seq1  GTACTTCTGGGAGAAGCTATGGAATATTATTTGGTACATAAGGGGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTGGGAGAAGCTATGGAATATTATTTGGTACATAAGGGGTTAAA  200

seq1  AATCAAGACTAAGGAGTGTTTGACTCTGTCTAACATTGTTGTATTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACTAAGGAGTGTTTGACTCTGTCTAACATTGTTGTATTTAAGT  250

seq1  TTGTGATTGCTGCTCTTCTGGTCACCTGGAGAAAATATTACAGAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTGCTGCTCTTCTGGTCACCTGGAGAAAATATTACAGAAAATAA  300

seq1  AGCTGCTTTATAATTCCTGAAAGTAACAGACTCAGCAAGTGAGGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTTATAATTCCTGAAAGTAACAGACTCAGCAAGTGAGGAAAATA  350

seq1  ATTTGCTATGCAAGCAGCTCTTGGATTTTTGTGAAGATAAATTTGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTATGCAAGCAGCTCTTGGATTTTTGTGAAGATAAATTTGCATTT  400

seq1  TCCCAAATTCCATTTTTCTTTTTGTCATTCAACATGAAACTGGCAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTCCATTTTTCTTTTTGTCATTCAACATGAAACTGGCAATGGA  450

seq1  CTTGTGTTTTTAAAACTGTTCCTAGCATACAAAAGAAAGCATTTCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTTTTAAAACTGTTCCTAGCATACAAAAGAAAGCATTTCTAGGA  500

seq1  ATGCAGTAAACTCATT-AAATTTGTGCATTGACATGG-AAATTACAAGTT  548
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  ATGCAGTAAACTCATTAAAATTTGTGCATTGACATGGAAAATTACAAGTT  550

seq1  TCGGATTAAACAGTACATGATTATAAT  575
      |||||||||||||||||||||||||||
seq2  TCGGATTAAACAGTACATGATTATAAT  577