BAC Information

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BAC

Clone NameB6Ng01-036N08
Chromosome16 (Build37)
Map Location 11,458,146 - 11,549,608
singlet/doubletdoublet
Overlap gene4933437K13Rik
Upstream geneCiita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream geneLOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N08.bB6Ng01-036N08.g
ACCDH864886DH864887
length899964
definitionDH864886|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N08, 5' end.DH864887|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,548,690 - 11,549,608)(11,458,146 - 11,459,128)
sequence
gaattctatagatcagacagacaagcacttatgcttaataactatcaaat
ttctcttaaggactcaggtagtttataaaattgcaattaaatactgatta
atctttcaaatctgatctaattttaaaagtcatgtagaaaatatgaaaat
ttgacattaaaaaaagcaagcagggactcacaaatactgaaaatggaata
aatcacaaaaaagtcaagatttgattaggcaaagtaaaaaactgatctta
gtttaaaaattgcacagaaaaattaaggataaagatatttgccacaagag
aggcacagaaatggtatcataaataaaaagatataaaaaatataaaacat
aagtatctaattttaaagtagcacattttttaaatgtcccaagcacaata
gcatccacctgtaatcccaacacttagtaggacaaaggagaatgttgagt
tcatgactagtctgtgctacataacaagatatgtcataaaataaaactaa
ataaaaaactaattaatattggaataactggggttgaatattcaactcta
aaacccaagagaacaagcaaaacagttgatatatttagaaaaagaggaat
aaaaacaaatatacagtttaattattaagaattgaagcttctggtttctg
tctgttcctggagcagtcctctgccactgggctccagaaccaggtggctc
tggaagagagctagactcccaggagtgcagacaagcctgtgagagcagta
ggaccatgactgctgctcagagaacctgtccagaactgtcaggacacaga
ctgagaacagcctggacagagcctccagttctgtctgtgcacagagctac
atacacataccaccagagacaccgttccaggatgccaacaacctgtata
gaattctctgggttaaagtgctaaccatgctgcttagctctggctgcaca
tttcagtccccaggggaagcttacagaactattaggcccaggccaccttc
cagactaattaagttaggctttctagaggcgagacccagactgcacaggt
ctggtgcccagatgttaatgtcctgccaggtattgggtgatggaagtgca
gcaggctgagctgatggtgggcacttctgaggttctgcaggggatgcaga
ggctgctggtgacatccaggaaggtgaaggtgcttgatatttttatttca
gaaccaaatggagagtcaatttgttactgttagtttcttttggaagtgtt
ggcatttttcatttttgcttaagagtttattttcaagtaagctgtaaaca
acttaagggatgactttgtttaccgatctgtatgtgaacttaagcctagg
cctgctcatgctttgcccgtcaacacggattgcgtgttcacaggttaaaa
ctgcacatgtgttttctgaggtggaattctttttaagggcagggtctttc
ttcctatatggtctagtctgggtctttgattgggacccccctgccttagc
ttctctagtgctagcatggcaaggggtgtgctgtcaagactcagctagga
gcagaattctgtcatctctggctagttgacacttcttaaaggaagttttt
tatttctgtgttttcaaacattaaccctgcaattgtaaaagctgtggacc
aaccccaaatgggaaggaagcccaaatcccatggcccaatgcaatcaatc
actgtcttcattgttaatcatcaagtccattttctaagctaagttaaacc
tttagtgtgtgtgcaagtaatgtgcatgtgtttatatttctctgttcatg
cagattcagatcatgtagtagcctcgccacaatgaagcaggtgactgaag
cctacggtgaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_11548690_11549608
seq2: B6Ng01-036N08.b_49_947 (reverse)

seq1  TATACAGGTTTGTTTGCACTCCTGGGAGACGGGTTGTCTCCTGGTGGTAT  50
      |||||||| ||||| ||| ||||||   ||||  ||||| ||||||||| 
seq2  TATACAGG-TTGTTGGCA-TCCTGG--AACGG--TGTCT-CTGGTGGTA-  42

seq1  TTGTGTATGTAGCTCTGTGGCACAGACAGAAACTGGAAGGCTCTTGTCCC  100
       ||||||||||||||||| |||||||||| |||||| |||||| ||| ||
seq2  -TGTGTATGTAGCTCTGT-GCACAGACAG-AACTGG-AGGCTC-TGT-CC  86

seq1  AGGCTGTTCCTCAGTTCTTGTGTCCTGACAGTTCTGGACAGGTTTCTCTG  150
      |||||||| ||||||   |||||||||||||||||||||||| |||||||
seq2  AGGCTGTT-CTCAGT--CTGTGTCCTGACAGTTCTGGACAGG-TTCTCTG  132

seq1  AGCAGCAGTCATGGTCCTACCTGCTCTCACAGGCTTGTCTGCACTCCTGG  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCAGCAGTCATGGTCCTA-CTGCTCTCACAGGCTTGTCTGCACTCCTGG  181

seq1  GAGTCTAGCTCTCTTCCAGAGCCACCTGGTTCTGGAGCCCAGTGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAGCTCTCTTCCAGAGCCACCTGGTTCTGGAGCCCAGTGGCAGAG  231

seq1  GACCTGCTCCAGGAACAGACAGAAACCAGAAGCTTCAATTCTTAATAATT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CTGCTCCAGGAACAGACAGAAACCAGAAGCTTCAATTCTTAATAATT  280

seq1  AAACTGTATATTTGTTTTTATTCCTCTTTTTCTAAATATATCAACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATATTTGTTTTTATTCCTCTTTTTCTAAATATATCAACTGTTT  330

seq1  TGCTTGTTCTCTTGGGTTTTAGAGTTGAATATTCAACCCCAGTTATTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCTCTTGGGTTTTAGAGTTGAATATTCAACCCCAGTTATTCCA  380

seq1  ATATTAATTAGTTTTTTATTTAGTTTTATTTTATGACATATCTTGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTAGTTTTTTATTTAGTTTTATTTTATGACATATCTTGTTATG  430

seq1  TAGCATAGACTAGTCATGAACTCAACATTCTCCTTTGTCCTACTAAGTGT  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGACTAGTCATGAACTCAACATTCTCCTTTGTCCTACTAAGTGT  480

seq1  TGGGATTACAGGTGGATGCTATTGTGCTTGGGACATTTAAAAAATGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTACAGGTGGATGCTATTGTGCTTGGGACATTTAAAAAATGTGCT  530

seq1  ACTTTAAAATTAGATACTTATGTTTTATATTTTTTATATCTTTTTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATTAGATACTTATGTTTTATATTTTTTATATCTTTTTATTTA  580

seq1  TGATACCATTTCTGTGCCTCTCTTGTGGCAAATATCTTTATCCTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCATTTCTGTGCCTCTCTTGTGGCAAATATCTTTATCCTTAATTT  630

seq1  TTCTGTGCAATTTTTAAACTAAGATCAGTTTTTTACTTTGCCTAATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCAATTTTTAAACTAAGATCAGTTTTTTACTTTGCCTAATCAAA  680

seq1  TCTTGACTTTTTTGTGATTTATTCCATTTTCAGTATTTGTGAGTCCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTTTTTTGTGATTTATTCCATTTTCAGTATTTGTGAGTCCCTGC  730

seq1  TTGCTTTTTTTAATGTCAAATTTTCATATTTTCTACATGACTTTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTTTAATGTCAAATTTTCATATTTTCTACATGACTTTTAAAAT  780

seq1  TAGATCAGATTTGAAAGATTAATCAGTATTTAATTGCAATTTTATAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGATTTGAAAGATTAATCAGTATTTAATTGCAATTTTATAAACT  830

seq1  ACCTGAGTCCTTAAGAGAAATTTGATAGTTATTAAGCATAAGTGCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTCCTTAAGAGAAATTTGATAGTTATTAAGCATAAGTGCTTGTC  880

seq1  TGTCTGATCTATAGAATTC  919
      |||||||||||||||||||
seq2  TGTCTGATCTATAGAATTC  899

seq1: chr16_11458146_11459128
seq2: B6Ng01-036N08.g_68_1031

seq1  GAATTCTCTGGGTTAAAGTGCTAACCATGCTGCTTAGCTCTGGCTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGTTAAAGTGCTAACCATGCTGCTTAGCTCTGGCTGCACA  50

seq1  TTTCAGTCCCCAGGGGAAGCTTACAGAACTATTAGGCCCAGGCCACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCCCCAGGGGAAGCTTACAGAACTATTAGGCCCAGGCCACCTTC  100

seq1  CAGACTAATTAAGTTAGGCTTTCTAGAGGCGAGACCCAGACTGCACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAATTAAGTTAGGCTTTCTAGAGGCGAGACCCAGACTGCACAGGT  150

seq1  CTGGTGCCCAGATGTTAATGTCCTGCCAGGTATTGGGTGATGGAAGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCCAGATGTTAATGTCCTGCCAGGTATTGGGTGATGGAAGTGCA  200

seq1  GCAGGCTGAGCTGATGGTGGGCACTTCTGAGGTTCTGCAGGGGATGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAGCTGATGGTGGGCACTTCTGAGGTTCTGCAGGGGATGCAGA  250

seq1  GGCTGCTGGTGACATCCAGGAAGGTGAAGGTGCTTGATATTTTTATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGTGACATCCAGGAAGGTGAAGGTGCTTGATATTTTTATTTCA  300

seq1  GAACCAAATGGAGAGTCAATTTGTTACTGTTAGTTTCTTTTGGAAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAATGGAGAGTCAATTTGTTACTGTTAGTTTCTTTTGGAAGTGTT  350

seq1  GGCATTTTTCATTTTTGCTTAAGAGTTTATTTTCAAGTAAGCTGTAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTCATTTTTGCTTAAGAGTTTATTTTCAAGTAAGCTGTAAACA  400

seq1  ACTTAAGGGATGACTTTGTTTACCGATCTGTATGTGAACTTAAGCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGGATGACTTTGTTTACCGATCTGTATGTGAACTTAAGCCTAGG  450

seq1  CCTGCTCATGCTTTGCCCGTCAACACGGATTGCGTGTTCACAGGTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCATGCTTTGCCCGTCAACACGGATTGCGTGTTCACAGGTTAAAA  500

seq1  CTGCACATGTGTTTTCTGAGGTGGAATTCTTTTTAA-GGCAGGTTCTTTC  549
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CTGCACATGTGTTTTCTGAGGTGGAATTCTTTTTAAGGGCAGGGTCTTTC  550

seq1  TTCCTATATGGTCTAGTCT-GGTCTTTGATTGGGACCCCCCTGCCTTAGC  598
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCTATATGGTCTAGTCTGGGTCTTTGATTGGGACCCCCCTGCCTTAGC  600

seq1  TTCTCTAGTGCTAGCATGGC-AGGGGTGTGCTGTC-AGACTCAGCTA-GA  645
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  TTCTCTAGTGCTAGCATGGCAAGGGGTGTGCTGTCAAGACTCAGCTAGGA  650

seq1  GCAGAATTCTGTCATCTCTGGCTAGTTGACACTTCTT-AAGGAAG-TTTT  693
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GCAGAATTCTGTCATCTCTGGCTAGTTGACACTTCTTAAAGGAAGTTTTT  700

seq1  TATTTCTGTGTTTTCAAACATT-ACCCTGCAATTGTAAAAGCTGTGGACC  742
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTTCTGTGTTTTCAAACATTAACCCTGCAATTGTAAAAGCTGTGGACC  750

seq1  AACCCCAAATGGG-AGGAGGCCCAAATCCCATGGCCCAATGCAATCAATC  791
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  AACCCCAAATGGGAAGGAAGCCCAAATCCCATGGCCCAATGCAATCAATC  800

seq1  ACTGTCTTCATTGTTAGTCCATCAAGTCCATTTTCTAAGCTTAGTTTTTA  841
      |||||||||||||||| | |||||||||||||||||||||| ||   |||
seq2  ACTGTCTTCATTGTTAAT-CATCAAGTCCATTTTCTAAGCTAAG---TTA  846

seq1  CACCTTTAGTTGTGTGTTGCAAGTTATGTGTCATGTGTTTTATATTTTCT  891
       |||||||| |||||| ||||||| ||||| |||||| |||||||||   
seq2  AACCTTTAG-TGTGTG-TGCAAGTAATGTG-CATGTG-TTTATATTT--C  890

seq1  TCTGTTTCTATGCAGATTTCAGATCATGTTTAAGTAGCCCTCGCCCCAGC  941
      ||||||   ||||||| ||||||||||||   ||||| ||||||| |   
seq2  TCTGTT--CATGCAGA-TTCAGATCATGT---AGTAG-CCTCGCCAC---  930

seq1  AAATGAAGGCAAGTGTGACTGATAGTCTTTACGTGTGAGGAC  983
       |||||| |||   |||||||| || |  |||| ||||||||
seq2  -AATGAA-GCA--GGTGACTGA-AGCC--TACG-GTGAGGAC  964