BAC Information

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BAC

Clone NameB6Ng01-037A15
Chromosome16 (Build37)1 (Build37)
Map Location 86,895,555 - 86,896,661169,530,684 - 169,530,803
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAdamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037A15.bB6Ng01-037A15.g
ACCDH865034DH865035
length1,094830
definitionDH865034|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A15, 5' end.DH865035|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,895,555 - 86,896,661)(169,530,684 - 169,530,803)
sequence
gaattcacattatgtcagttttgttatgtacaaatggaaattttaatttt
agccttgcatactgttcatgctccaaatagcattgtaactgctatagaag
cacacaaaacctctgggagactatagttttcatagtgttacaacaatact
tacttcgagtaaacacataattagagtgagccaaatttccgacactggca
aaagaaacagaaaaaaaaaaggaaccttttgatgaaagaaaatggctcat
gtggccagtacctaagatgtgctctcaatggtaaagctgcctgcagcaga
gaaaggaggccagccttcctgtgaagcattctacttgcatatcagctact
ttgtggtttgcttttcttcttacttttcagtcagtgtccatttctgggta
gtgatagtgagtacaggattttattgtgcatggacattttaggcattgac
acactatacctataacaaaaactatagtgcataggtacatagtaggtgat
attcttcaggcatgtgtaagtatactctatcgtgttccctcaatgatgaa
atcagctaacaaaagaatgttaataatacatcactttacttctgtacaga
ttcccttgggccaggaatcaatgaccattttgtgcctgttaagagattca
gtcatttcaattagtgctgttaacccgtcatagagagaaaatgcaggagg
aagggacctaaatcattcaaccaagatcatcaagcaatgtcatcgcttta
agtatttgaagtcacaaagataaagaacagtatcttaaccatgtcaggga
cctttctctcatgcatctttatgccaaggttccggaccactaggaaagct
gagatagtccaccttctgggatggagaacttaaaagtttctcttttcttc
cctgtcccctttcctattcccctcctccctccccccccccacactctgtc
tcatatttgagactgagctgggatctagcaccaaccattatttatttatt
tatttatttatttattattttatatctattcaacagaaggcttttcctcc
taatttgctgaaggccctagtaaggcttataggcaatatataat
gaattctaagatatgtttaatttctttatttctgccatgattcatttgtc
attcagtagagaaattttcagttcccatgagtttgttggctttctgttgt
ttctgttgttgttgaaatgaaactctaatccatggtggtctgataaaaca
catgggggttacttcagttatcttatatcctttgagacttgctttgtgac
tgagtctgtggtcaattgtggagaagtttccctggtgtgctgagaaaaaa
ggtttattcttttttgtgtgaagtgttctatacattcctgttaggtccat
ctggttcattacatctgttagtttcattatttctctgtttagttttttct
ggatgacctgtccattgatgagtagtattgaagtctcccactattaatac
gtgggttacaatatatgatttaagctttaataatgtttcctttacaagtg
taggtgcttttgcatatgggcatatttgttaaaaattgacacattacctt
agtggattttttactatggtgaatataaactgtccttcctgtctctttta
attagttttggttgaaagactgttttgttagatattgtaatagctataat
aagcttgcttcttatatcgatttgctttaaaattctttttccagctattt
actcttgggtatatctatctgtgatgttgagaaggatgggtcctgttttc
atatcccttctgttcgacttttcttcttattggagaattcaagcctttga
tattgaggaatattaacaaccaatgatttgttaatgcctctgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86895555_86896661
seq2: B6Ng01-037A15.b_46_1139 (reverse)

seq1  ATTATA-ATTGCCTATAAGACTTTACTAGGAGACTTTCAGCAAAATTTAG  49
      |||||| |||||||||||| | |||||||  | | |||||| |||||  |
seq2  ATTATATATTGCCTATAAG-CCTTACTAG--GGCCTTCAGC-AAATTAGG  46

seq1  AAGAAAAGCCTTCTGTTTGAAATAAATAAATAAATAAATAAATAAATAAA  99
      | |||||||||||||||   |||| ||  |||||  ||||||||||||||
seq2  AGGAAAAGCCTTCTGTT--GAATAGAT--ATAAAATAATAAATAAATAAA  92

seq1  TAAATAAATAAATAATGGTTTGGTGCTAGATCCCAGCCTCAGTCTTCAAT  149
      |||||||||||||||||| ||||||||||||||||| ||||||||  |||
seq2  TAAATAAATAAATAATGG-TTGGTGCTAGATCCCAG-CTCAGTCTCAAAT  140

seq1  ATGAGACAGAGTGGTGGGGGGGGGGGAGGGAGGAGGGGAATAGGAAAGGG  199
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGAGTG--TGGGGGGGGGGAGGGAGGAGGGGAATAGGAAAGGG  188

seq1  GACAAGGGAAGAAAAGAGAAACTTTTAAGTTCTCCATCCCAGAAGGTGGA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-AGGGAAGAAAAGAGAAACTTTTAAGTTCTCCATCCCAGAAGGTGGA  237

seq1  CTATCTCAGCTTTCCTAGTGGTCCGGAACCTTGGCATAAAGATGCATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGCTTTCCTAGTGGTCCGGAACCTTGGCATAAAGATGCATGAG  287

seq1  AGAAAGGTCCCTGACATGGTTAAGATACTGTTCTTTATCTTTGTGACTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTCCCTGACATGGTTAAGATACTGTTCTTTATCTTTGTGACTTC  337

seq1  AAATACTTAAAGCGATGACATTGCTTGATGATCTTGGTTGAATGATTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAAAGCGATGACATTGCTTGATGATCTTGGTTGAATGATTTAG  387

seq1  GTCCCTTCCTCCTGCATTTTCTCTCTATGACGGGTTAACAGCACTAATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCCTCCTGCATTTTCTCTCTATGACGGGTTAACAGCACTAATTG  437

seq1  AAATGACTGAATCTCTTAACAGGCACAAAATGGTCATTGATTCCTGGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTGAATCTCTTAACAGGCACAAAATGGTCATTGATTCCTGGCCC  487

seq1  AAGGGAATCTGTACAGAAGTAAAGTGATGTATTATTAACATTCTTTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATCTGTACAGAAGTAAAGTGATGTATTATTAACATTCTTTTGTT  537

seq1  AGCTGATTTCATCATTGAGGGAACACGATAGAGTATACTTACACATGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTCATCATTGAGGGAACACGATAGAGTATACTTACACATGCCT  587

seq1  GAAGAATATCACCTACTATGTACCTATGCACTATAGTTTTTGTTATAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATATCACCTACTATGTACCTATGCACTATAGTTTTTGTTATAGGT  637

seq1  ATAGTGTGTCAATGCCTAAAATGTCCATGCACAATAAAATCCTGTACTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTCAATGCCTAAAATGTCCATGCACAATAAAATCCTGTACTCA  687

seq1  CTATCACTACCCAGAAATGGACACTGACTGAAAAGTAAGAAGAAAAGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTACCCAGAAATGGACACTGACTGAAAAGTAAGAAGAAAAGCAA  737

seq1  ACCACAAAGTAGCTGATATGCAAGTAGAATGCTTCACAGGAAGGCTGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGTAGCTGATATGCAAGTAGAATGCTTCACAGGAAGGCTGGCC  787

seq1  TCCTTTCTCTGCTGCAGGCAGCTTTACCATTGAGAGCACATCTTAGGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTGCTGCAGGCAGCTTTACCATTGAGAGCACATCTTAGGTAC  837

seq1  TGGCCACATGAGCCATTTTCTTTCATCAAAAGGTTCCTTTTTTTTTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACATGAGCCATTTTCTTTCATCAAAAGGTTCCTTTTTTTTTTCTG  887

seq1  TTTCTTTTGCCAGTGTCGGAAATTTGGCTCACTCTAATTATGTGTTTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCCAGTGTCGGAAATTTGGCTCACTCTAATTATGTGTTTACT  937

seq1  CGAAGTAAGTATTGTTGTAACACTATGAAAACTATAGTCTCCCAGAGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTAAGTATTGTTGTAACACTATGAAAACTATAGTCTCCCAGAGGTT  987

seq1  TTGTGTGCTTCTATAGCAGTTACAATGCTATTTGGAGCATGAACAGTATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCTTCTATAGCAGTTACAATGCTATTTGGAGCATGAACAGTATG  1037

seq1  CAAGGCTAAAATTAAAATTTCCATTTGTACAATAACAAAACTGACATAAT  1099
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGGCTAAAATTAAAATTTCCATTTGTAC-ATAACAAAACTGACATAAT  1086

seq1  GTGAATTC  1107
      ||||||||
seq2  GTGAATTC  1094

seq1: chr1_169530684_169530803
seq2: B6Ng01-037A15.g_851_898 (reverse)

seq1  ----CACACACACACACACACACACACACACACACACACAGAGAGAGAGA  46
          |||||||||||||||||||||||||||||||||||||||  |    
seq2  CACACACACACACACACACACACACACACACACACACACAGAGGCATT--  48

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGACACACACACACACACAGAGCAA  96
                                                        
seq2  --------------------------------------------------  48

seq1  GAGACCGACACACACAGAGGCATT  120
                              
seq2  ------------------------  48