BAC Information

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BAC

Clone NameB6Ng01-038M15
Chromosome16 (Build37)
Map Location 43,151,691 - 43,152,207
singlet/doubletsinglet
Overlap genenone
Upstream geneGap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M15.bB6Ng01-038M15.g
ACCDH866245DH866246
length1,270961
definitionDH866245|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M15, 5' end.DH866246|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactttcatacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcaatccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccatgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgagaaatggtgccatatctggggatcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggccatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtgcctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaagaggttgtaatgctgcagttgt
ccacttctgggttgtgcctgcgtaacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagtcgatcttagggaacaccccatgag
gctataggcacatgttggcagaagatggcattgtaacaggagtagaaaca
ataggcatttgagcacttcttcatgtaacttgctgggccttcaggacctg
ccctggcccgatcacataaaaaccacttccatttgaaataaaactggttg
cgtggtgcatcccacttatgacttgcaagctgatagttccacgctcatga
tgggtagtcaggtgcgcattaaactggtgttcaattgtcacggtcagttc
cttagccatgcaagccgagagcgttcaagaaagtgtcgcgagtagtggaa
tgtccaatccacagccatcg
gaattctttgcaatgcatgtaccccatttttaaatgggggtatttgaatt
tctgaagtccagcttcttgagttctttgtatatcttagttattagtaccc
tatcagatttaggattgggaaatatactttcccaaactgttggtggcctt
tttgtcttattgatagtgtcttttgccttacagaagcttagcaattttat
gaggtcccatttgatgattctcgatcttacagcacaagcctttgctattc
tgttcaggaatttttcccctgtgcccatatctttgaggcttttccccatt
ttctcctctataagtttcagtgtcgctggttttatgtggacttccttgat
ccactttcacttgagctttgtacaagaaaataagaatggatcaattcaca
ttctttaccatggtcactgccagttgagccagcaccatttgttgaaaatg
ctgtcttttttccactggttggttttagctcctttgtcaaagatcaagtg
accatagctgtgtgggttaatttctgggttttcaattctattccattgat
atacctgtctgttgctgtacccatataatgcagcttttatcacaattgct
ctgtagtacagcttgaggtcaggtatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttctgttattccagaaga
atttgcaaaatgccctttctaactctgtgaagaattgagttggaattttg
atggagattgcattgaatgtgtaggttgctttcagcaggatagccatttt
gactacacttatcctgtgaatccatgagcatgggagattgttccatctta
tgagatctttaatttctttcttcagagacttgaagttcttatcatacaga
tctttcacatccttagagtcacacaagatatttatattgtttccctaact
tctttctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43151691_43152207
seq2: B6Ng01-038M15.g_70_400 (reverse)

seq1  ATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCA  50
      |||||||||| ||||||||||||||||||||||||| ||||| |||||| 
seq2  ATAAAACCAGCGACACTGAAACTTATAGAGGAGAAAATGGGGAAAAGCCT  50

seq1  CGAAGATATGGGCACAGGGGAAAAATTCCTTAATAGAACAGCAATGGCTT  100
      | |||||||||||||||||||||||||||| || |||| ||||| |||||
seq2  CAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAATAGCAAAGGCTT  100

seq1  GTGCTGTAAGATCGAGAATGA-CCAATGGGACCTCATAAAATTGCAAAGC  149
      ||||||||||||||||||| | | ||||||||||||||||||||| ||||
seq2  GTGCTGTAAGATCGAGAATCATCAAATGGGACCTCATAAAATTGCTAAGC  150

seq1  TTCTGCAAGGCAAAAGACTCCGTCAATAAGACAAAAAGGCCACCAACAGA  199
      ||||| |||||||||||| |  ||||||||||||||||||||||||||| 
seq2  TTCTGTAAGGCAAAAGACACTATCAATAAGACAAAAAGGCCACCAACAGT  200

seq1  TTGGGAAAGGATTTTTACCTATCCTAAATCAGATAGGGGACTAATATCCT  249
      ||||||||| || ||| || |||||||||| ||||||| |||||||  ||
seq2  TTGGGAAAGTATATTTCCCAATCCTAAATCTGATAGGGTACTAATA-ACT  249

seq1  ATGAATTTC--TTAACTGACTAATCTTTGTTGCCTTTGAAACATGCATCC  297
      | ||  | |    |||| |  ||     | ||   || | | || ||   
seq2  AAGATATACAAAGAACTCAAGAA-----GCTGGACTTCAGAAATTCA--A  292

seq1  TTTCCTGTCCATGTTGGTTCTTTGTGGATGTGTTGTTTTTGTGTGTGATG  347
       | ||   |||         |||    ||| |  ||   ||  |    ||
seq2  ATACC--CCCA---------TTTAAAAATGGG--GTACATGCAT----TG  325

seq1  TTAATATTTTAGGATTTTATGAATAATTCTCTGATTACTTTACCCTGAGC  397
        || |                                            
seq2  CAAAGA--------------------------------------------  331

seq1  CTAGGATCAATGTCTGACCCTCTTCAAACTTTCAGAGAGCCTAAATGCAG  447
                                                        
seq2  --------------------------------------------------  331

seq1  TTGTATTGTGGCTTTCCCAATTCCAAGTCTCACCTTCCCTTTTTATTTAG  497
                                                        
seq2  --------------------------------------------------  331

seq1  ACGTACATGCATTGCAAAGA  517
                          
seq2  --------------------  331