BAC Information

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BAC

Clone NameB6Ng01-039F05
Chromosome16 (Build37)
Map Location 76,926,659 - 76,927,923
singlet/doubletsinglet
Overlap genenone
Upstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
Downstream geneLOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F05.bB6Ng01-039F05.g
ACCDH866625DH866626
length1,2421,230
definitionDH866625|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F05, 5' end.DH866626|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcaattctgagccccattttttaatggggttatttgatt
ttctggagtcccccctcttcagttctttatatatattggatattagtccg
ataggtaaagatcctttcccaatctgttggtggcctttttgtcttattga
cagtattttttgccttgcagaagctttgcagtttcatgaggtcccatttg
tcgattctcgatcttacagcacaagccattgctgttctattcaggaattt
ttcccctatgcccatatcttcgaggcttttccccactttctcctctataa
gtttcagtgtctctggttttatgtgaagttccttgatccacttagatttg
accttagtacaaggagataggaatggatcgattcgcattcttctacatga
taaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttttcc
actggatggttttagctcccttgtcaaagatcaagtgaccataggtgtgt
ggattcatctctgggtcttcaattctgttccattggtctacttgtctgtc
actataccagtaccatgcagtttttatcacaattgctctgtagtacagtt
ttaggtccggcatggtgattccaccagaggttcttttatccttgagaaga
gtttttgttatcctcggttttttgttattccagatgaatcggccgattgc
cctttctaattcgttgaagaattgagttggaattttgatggggattgcat
tgaatctgtagattgcttttggcaagatagccatttttacaatgttgatc
ctgccagtccatgagcatgggagatccatttgccaaatgcatggaactct
agaagaatgaagaccaaagtgtggacaccatgccccttcttagaattggg
aacaaaacacccatggaaagagttacagagacaaagtttggagcttcgac
aaaaggatggaccatctagagactgcgtatctagggatccaccccctagc
aacaagagtggatgctcacagtcagctatggatggatcacagggccccaa
tggagagctagagaaagtatcaaggagctaagagatctggaccctgtagt
ggcacaacatatgaactatcagaatcccaaagctctgactcagttcacat
atgtacaaagaatggctcatcgcctccctgagaggccctcgacacacctt
tatgtcctcatcggaagcctggccaaaatagaatgctggtgg
gaattcttctgctcctatgcctactgttatatgaagtaacttcaagccaa
atctgatatcagattccttgagttagcaagctttttgtgctcagtgtgga
agcaagtgctggggaaaagctaattaaaatggcagagaccagactcttcc
tttaatgatgctttcttgtcaatcatttggtttatttcagttaatgtagg
gcgtccctttgtggtgcagcctaccttggagcctcccaccatgctgtctc
agcacgcccagtgctaggattacaggcccaggccaccacacccagctaag
gattgttgaattgaaacagaatagtgttatattcagagcgatccattcca
caggtctttttgcatggtatttttatggtgtttcctacatgcttcttcag
aaagggataatatgcctttatgaaaaaaaattgcttggcaaatttactaa
aatttgtgttctcagcctatacaaagccggttgtagtgggcacgactgat
tgaggaaataagtttagaagtaaacatgtatagcgctatgtgaatggaaa
cccatttttaaaaatcaccaaaaagaatatttgaaaagaacttgcattgt
tgattcagtagatacaaaaaaaagtcatggatatccaaccctggtacagc
agtgaccatgatacagaagtatgactaaccctctcacattatcttgtatt
taacctttctccatctcatgtaatatgaatttaaaaaaaaagttaatcat
acagatcaggaataaccactaggacttgtgagtatgaaggtacattttca
aacctgagaggtgctgtaatacagtatttatcttgcctttaacagcttac
atcagactacaaagactatttcctaatacacaggggagcactctatcact
gtgacaaatgtcttagaaactgacagagacaaaagtaaggataaatctag
taactttgctttactctagatgatgaaatgcattacagggaccatagaaa
gctttgcaatctcagtagacattcggcttgaaaacaagcctacggttgct
aaagtcattttgcagtgaaatttgcttgggttagtttgtttttatctcca
gaatcagttactgaaaataagatgaaaatactttccccagcactaatttc
aaagacacactctgttgtgcctgtaatcaagatctctgcttgagaattta
acaagtggcataaataaaaatctctaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76926659_76927923
seq2: B6Ng01-039F05.g_66_1295 (reverse)

seq1  AACCTAGAGATATTTTATTAATATGCCCACAACTTTGTTAAA-TCTAAAA  49
      ||||||||||| |||||||  ||||||    || |||||||| ||| || 
seq2  AACCTAGAGAT-TTTTATT--TATGCC----AC-TTGTTAAATTCTCAA-  41

seq1  GGAAGAAAATCTAGATAACAGGCATCAAC-GAGTTGTTGTCTTTAGAAAT  98
       | || | |||| ||| ||||||| |||| ||||   ||||||| |||  
seq2  -GCAG-AGATCTTGATTACAGGCA-CAACAGAGT--GTGTCTTT-GAA--  83

seq1  ATAAGTGCTTGGGGGAAAGTATTTTTCAATCTTAATTTTCAGTAACGTGA  148
      || ||||||  ||||||||||||||   ||||| |||||||||||| || 
seq2  ATTAGTGCT--GGGGAAAGTATTTT--CATCTT-ATTTTCAGTAAC-TG-  126

seq1  ATTCTGGAAGATAAAACATACCTAACAC-AGCAAATGTCACTGCAAAGAT  197
      ||||||| ||||||||   | ||||| | ||||||| |||||||||| ||
seq2  ATTCTGG-AGATAAAAACAAACTAACCCAAGCAAATTTCACTGCAAA-AT  174

seq1  GACTTTAAGCAACCGTAGGCTATGTTTTCAAGGCGAATGTCTACTGAGAT  247
      |||||| |||||||||||||| |||||||||| |||||||||||||||||
seq2  GACTTT-AGCAACCGTAGGCT-TGTTTTCAAGCCGAATGTCTACTGAGAT  222

seq1  TGCAAAAGCTTTTCTATGGGTCCCCTGTAATGCATTTTCATCAATCTAAG  297
      ||| ||||| |||||||||   |||||||||||| ||||||| |||| ||
seq2  TGC-AAAGC-TTTCTATGG--TCCCTGTAATGCA-TTTCATC-ATCT-AG  265

seq1  AGTAAAGCAAAGTTACTTAGATTTAATCCTTACTTTTGTCTCTGTCAGTT  347
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  AGTAAAGCAAAGTTAC-TAGATTT-ATCCTTACTTTTGTCTCTGTCAGTT  313

seq1  TCTAAGACATTTTGTCACAGTGATAGAGTGCTCCCCTGTGTATTAGGAAA  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACA-TTTGTCACAGTGATAGAGTGCTCCCCTGTGTATTAGGAAA  362

seq1  TAGTCTTTGTAGTCTGATGTAAGCTGTTAAAGGCAAGATAAATACTGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGTAGTCTGATGTAAGCTGTTAAAGGCAAGATAAATACTGTAT  412

seq1  TACAGCACCTCTCAGGTTTGAAAATGTACCTTCATACTCACAAGTCCTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACCTCTCAGGTTTGAAAATGTACCTTCATACTCACAAGTCCTAG  462

seq1  TGGTTATTCCTGATCTGTATGATTAACTTTTTTTTTAAATTCATATTACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTCCTGATCTGTATGATTAACTTTTTTTTTAAATTCATATTACA  512

seq1  TGAGATGGAGAAAGGTTAAATACAAGATAATGTGAGAGGGTTAGTCATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGAGAAAGGTTAAATACAAGATAATGTGAGAGGGTTAGTCATAC  562

seq1  TTCTGTATCATGGTCACTGCTGTACCAGGGTTGGATATCCATGACTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCATGGTCACTGCTGTACCAGGGTTGGATATCCATGACTTTTT  612

seq1  TTTGTATCTACTGAATCAACAATGCAAGTTCTTTTCAAATATTCTTTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTACTGAATCAACAATGCAAGTTCTTTTCAAATATTCTTTTTG  662

seq1  GTGATTTTTAAAAATGGGTTTCCATTCACATAGCGCTATACATGTTTACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTAAAAATGGGTTTCCATTCACATAGCGCTATACATGTTTACT  712

seq1  TCTAAACTTATTTCCTCAATCAGTCGTGCCCACTACAACCGGCTTTGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTTATTTCCTCAATCAGTCGTGCCCACTACAACCGGCTTTGTAT  762

seq1  AGGCTGAGAACACAAATTTTAGTAAATTTGCCAAGCAATTTTTTTTCATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGAACACAAATTTTAGTAAATTTGCCAAGCAATTTTTTTTCATA  812

seq1  AAGGCATATTATCCCTTTCTGAAGAAGCATGTAGGAAACACCATAAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATATTATCCCTTTCTGAAGAAGCATGTAGGAAACACCATAAAAAT  862

seq1  ACCATGCAAAAAGACCTGTGGAATGGATCGCTCTGAATATAACACTATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAAAAAGACCTGTGGAATGGATCGCTCTGAATATAACACTATTC  912

seq1  TGTTTCAATTCAACAATCCTTAGCTGGGTGTGGTGGCCTGGGCCTGTAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAATTCAACAATCCTTAGCTGGGTGTGGTGGCCTGGGCCTGTAAT  962

seq1  CCTAGCACTGGGCGTGCTGAGACAGCATGGTGGGAGGCTCCAAGGTAGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTGGGCGTGCTGAGACAGCATGGTGGGAGGCTCCAAGGTAGGC  1012

seq1  TGCACCACAAAGGGACGCCCTACATTAACTGAAATAAACCAAATGATTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACAAAGGGACGCCCTACATTAACTGAAATAAACCAAATGATTGA  1062

seq1  CAAGAAAGCATCATTAAAGGAAGAGTCTGGTCTCTGCCATTTTAATTAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCATCATTAAAGGAAGAGTCTGGTCTCTGCCATTTTAATTAGC  1112

seq1  TTTTCCCCAGCACTTGCTTCCACACTGAGCACAAAAAGCTTGCTAACTCA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCAGCACTTGCTTCCACACTGAGCACAAAAAGCTTGCTAACTCA  1162

seq1  AGGAATCTGATATCAGATTTGGCTTGAAGTTACTTCATATAACAGTAGGC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGATATCAGATTTGGCTTGAAGTTACTTCATATAACAGTAGGC  1212

seq1  ATAGGAGCAGAAGAATTC  1265
      ||||||||||||||||||
seq2  ATAGGAGCAGAAGAATTC  1230