BAC Information

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BAC

Clone NameB6Ng01-039N09
Chromosome16 (Build37)
Map Location 74,084,796 - 74,215,260
singlet/doubletdoublet
Overlap geneRobo2
Upstream geneLOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N09.bB6Ng01-039N09.g
ACCDH866984DH866985
length6351,061
definitionDH866984|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N09, 5' end.DH866985|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,214,626 - 74,215,260)(74,084,796 - 74,085,885)
sequence
gaattcatctgcaagtcataagaaaacacagtgaccagaaatctcttgca
cataatctttgttgaggtgaccatttcctaagttaagaaatccagtgaaa
accttggtgtaaaagtctttttcctaaataagtggttagtcagtataact
gccagcgaaaagaacatattgagccttaaagtgcttgtttgacagcacat
cgaatgcatagaagacaatcatatgtagtatgcatttctcagtagaatgg
atgctatcttgactctggtttttcaagagaaaggattggtagttttcaga
atacatgtcaagatatcttttccacagaagtatgtgaagttgttccctga
aatgaactgtttcagcagcctgaatcaattgtttctgtttaaagataaac
tacttagcacaatatattgctggttcttaaaactgctgcatttaacccta
taggtggaacaacaatatgaactaaccagtacccccagagctcgtgtctc
tagctgcatttgtagcagaagatggcctagttggtcatcattgggaagag
aggcccctaggtcttgcaaactttatatgccccaatacaggggaatgcca
gtgccaagaagtgggagtgggtgggtaggagagca
gaattcaatgagaagataaatgcctttttttttttaaagaaaaaaaaatc
agggcagctcaactcctcaaagagatgtgacttatcactgcctgcaagct
taaaaatagaatatgaaactaatctttttctatgaagaatcaatgtgagc
cgaatagtcaaaatgacttctgctattaaccacatctctaatgattgatt
gcatcccttattggtagtttaaattgttctggtgaggcaattagcaatct
ttgcaaacacaatgaagctgactgaatgattcaggtgagatgagtcagca
ccgtagcaggtgcagaaattgcgagccttgcacttgggaaaattacattt
tatgaattaatggcacagctctcttccaccatattatttctttgtttctt
tctttctttttttttttttccttttgactggggagaggaaaaggctgtgc
actccacatgatacccagaatttctatctcctctactgagaatctccttt
ctccctaatcattcatcctgccctatacatgtttgcaatgtagatttctt
ctgaacaggagctccagttttagccatgtgttttaggagctatttgaatg
taagcaaatattcaagcccacagagatcccatcgataccttcatttataa
tatagatagaacaaggtcctcaatgtcggagtagtctgagatttgaggtg
gataatacatcaagtgcctaccacactaacaggaacaatatcaataggat
gcatcctaggctctctgcttattggcaatggtcccatgtttgcagtagaa
aacacatggaagtctggcaatgctcctttagagagtagcaatggccactc
tactggggaataatttttcataaagcactagagtgaattttaatggatat
ttatatatttacatttcaaatgtatccctttccagattacccccagaacc
cttaccatcccctcctctgttatacgagggtttgccctaccacccaccac
cactctgctgctgctagcattcccttaacttgggcatctagctcactgac
agctcatctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74214626_74215260
seq2: B6Ng01-039N09.b_46_680 (reverse)

seq1  TGCTCTCCTACCCACCCACTCCCACTTCTTGGCACTGGCATTCCCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTACCCACCCACTCCCACTTCTTGGCACTGGCATTCCCCTGTA  50

seq1  TTGGGGCATATAAAGTTTGCAAGACCTAGGGGCCTCTCTTCCCAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCATATAAAGTTTGCAAGACCTAGGGGCCTCTCTTCCCAATGATG  100

seq1  ACCAACTAGGCCATCTTCTGCTACAAATGCAGCTAGAGACACGAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTAGGCCATCTTCTGCTACAAATGCAGCTAGAGACACGAGCTCTG  150

seq1  GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTAAATGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTAAATGCAG  200

seq1  CAGTTTTAAGAACCAGCAATATATTGTGCTAAGTAGTTTATCTTTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAAGAACCAGCAATATATTGTGCTAAGTAGTTTATCTTTAAACA  250

seq1  GAAACAATTGATTCAGGCTGCTGAAACAGTTCATTTCAGGGAACAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTGATTCAGGCTGCTGAAACAGTTCATTTCAGGGAACAACTTC  300

seq1  ACATACTTCTGTGGAAAAGATATCTTGACATGTATTCTGAAAACTACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCTGTGGAAAAGATATCTTGACATGTATTCTGAAAACTACCAA  350

seq1  TCCTTTCTCTTGAAAAACCAGAGTCAAGATAGCATCCATTCTACTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTTGAAAAACCAGAGTCAAGATAGCATCCATTCTACTGAGAA  400

seq1  ATGCATACTACATATGATTGTCTTCTATGCATTCGATGTGCTGTCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACTACATATGATTGTCTTCTATGCATTCGATGTGCTGTCAAACA  450

seq1  AGCACTTTAAGGCTCAATATGTTCTTTTCGCTGGCAGTTATACTGACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTAAGGCTCAATATGTTCTTTTCGCTGGCAGTTATACTGACTAA  500

seq1  CCACTTATTTAGGAAAAAGACTTTTACACCAAGGTTTTCACTGGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATTTAGGAAAAAGACTTTTACACCAAGGTTTTCACTGGATTTCT  550

seq1  TAACTTAGGAAATGGTCACCTCAACAAAGATTATGTGCAAGAGATTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGGAAATGGTCACCTCAACAAAGATTATGTGCAAGAGATTTCTG  600

seq1  GTCACTGTGTTTTCTTATGACTTGCAGATGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGTTTTCTTATGACTTGCAGATGAATTC  635

seq1: chr16_74084796_74085885
seq2: B6Ng01-039N09.g_67_1127

seq1  GAATTCAATGAGAAGATAAATGCCTTTTTTTTTTTAAAGAAAAAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGAAGATAAATGCCTTTTTTTTTTTAAAGAAAAAAAAATC  50

seq1  AGGGCAGCTCAACTCCTCAAAGAGATGTGACTTATCACTGCCTGCAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCTCAACTCCTCAAAGAGATGTGACTTATCACTGCCTGCAAGCT  100

seq1  TAAAAATAGAATATGAAACTAATCTTTTTCTATGAAGAATCAATGTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGAATATGAAACTAATCTTTTTCTATGAAGAATCAATGTGAGC  150

seq1  CGAATAGTCAAAATGACTTCTGCTATTAACCACATCTCTAATGATTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAGTCAAAATGACTTCTGCTATTAACCACATCTCTAATGATTGATT  200

seq1  GCATCCCTTATTGGTAGTTTAAATTGTTCTGGTGAGGCAATTAGCAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTTATTGGTAGTTTAAATTGTTCTGGTGAGGCAATTAGCAATCT  250

seq1  TTGCAAACACAATGAAGCTGACTGAATGATTCAGGTGAGATGAGTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACACAATGAAGCTGACTGAATGATTCAGGTGAGATGAGTCAGCA  300

seq1  CCGTAGCAGGTGCAGAAATTGCGAGCCTTGCACTTGGGAAAATTACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCAGGTGCAGAAATTGCGAGCCTTGCACTTGGGAAAATTACATTT  350

seq1  TATGAATTAATGGCACAGCTCTCTTCCACCATATTATTTCTTTGTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTAATGGCACAGCTCTCTTCCACCATATTATTTCTTTGTTTCTT  400

seq1  TCTTTCTTTTTTTTTTTTTCCTTTTGACTGGGGAGAGGAAAAGGCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTTTTTTTTCCTTTTGACTGGGGAGAGGAAAAGGCTGTGC  450

seq1  ACTCCACATGATACCCAGAATTTCTATCTCCTCTACTGAGAATCTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATGATACCCAGAATTTCTATCTCCTCTACTGAGAATCTCCTTT  500

seq1  CTCCCTAATCATTCATCCTGCCCTATACATGTTTGCAATGTAGATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAATCATTCATCCTGCCCTATACATGTTTGCAATGTAGATTTCTT  550

seq1  CTGAACAGGAGCTCCAGTTTTAGCCATGTGTTTTAGGAGCTATTTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGAGCTCCAGTTTTAGCCATGTGTTTTAGGAGCTATTTGAATG  600

seq1  TAAGCAAATATTCAAGCCCACAGAGATCCCATCGATACCTTCATTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATATTCAAGCCCACAGAGATCCCATCGATACCTTCATTTATAA  650

seq1  TATAGATAGAACAAGGTCCTCAATGTCGGAGTAGTCTGAGATTTGAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAGAACAAGGTCCTCAATGTCGGAGTAGTCTGAGATTTGAGGTG  700

seq1  GATAATACATCAAGTGCCTACCACACTAACAGGAACAATATCAATAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACATCAAGTGCCTACCACACTAACAGGAACAATATCAATAGGAT  750

seq1  GCATCCTAGGCTCTCTGCTTATTGGCAATGGTCCCATGTTTGCAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTAGGCTCTCTGCTTATTGGCAATGGTCCCATGTTTGCAGTAGAA  800

seq1  AACACATGGAAGTCTGGCAATGCTCCTTTAGAGAGTAGCAATGGCCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGGAAGTCTGGCAATGCTCCTTTAGAGAGTAGCAATGGCCACTC  850

seq1  TACTGGGGAATAATTTTTCATAAAGCACTAGAGTGAATTTTTAATGGATA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTGGGGAATAATTTTTCATAAAGCACTAGAGTGAA-TTTTAATGGATA  899

seq1  TTTTATATATTTACATTTCAAATGTTATCCCCTTTCCAGATTTACCCCCC  950
       ||||||||||||||||||||||| ||| |||||||||||||   |||||
seq2  -TTTATATATTTACATTTCAAATG-TAT-CCCTTTCCAGATT--ACCCCC  944

seq1  AGAAACCCCTTACCCATCCCCTCCTCCTGTTTATACGAGGGTTTGCCCCT  1000
      ||||  |||||| |||||||||||| ||| ||||||||||||||| ||||
seq2  AGAA--CCCTTA-CCATCCCCTCCT-CTG-TTATACGAGGGTTTG-CCCT  988

seq1  ACCCACCCACCCACCCACTCCTGCCTGCCTGCCCTAGCATTCCCCTACAC  1050
      | |||||||||   ||||| ||| ||| |||  ||||||||||| || ||
seq2  A-CCACCCACC--ACCACT-CTG-CTG-CTG--CTAGCATTCCCTTA-AC  1029

seq1  TGGGGCATCTAGCCTTCACTGGACCAAGGGCCTCATCTCC  1090
      | |||||||||||  ||||| |||  ||   |||||||||
seq2  TTGGGCATCTAGC--TCACT-GAC--AG---CTCATCTCC  1061