BAC Information

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BAC

Clone NameB6Ng01-040C14
Chromosome16 (Build37)
Map Location 10,684,520 - 10,868,133
singlet/doubletdoublet
Overlap gene4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C14.bB6Ng01-040C14.g
ACCDH867214DH867215
length8841,017
definitionDH867214|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C14, 5' end.DH867215|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,684,520 - 10,685,400)(10,867,111 - 10,868,133)
sequence
gaattcaagtcatcaagcacttttatccccgagccttctggccaacgcag
tgtttcttaagggaggtctaggtgcagcccttctgcagtacagtcaaaga
ggggtccaggaaaatgaggtagatgggcactgagatctgctacagggcgt
gctagagtgactggaagacattgagtcaccagcactgagcactctagaga
gccatacagggaaggaagctcctgaggctgccatccctagggcaggcagg
gaggactgtctgccactgaaccccacctacatgccccatccatcgcagca
cctcaacacaatggtgccctgtcttctgactcccaggacagcccaaacct
actctcttaaaagattcagactctgggcaaactagggttccactcagcag
ctcttcaggttcctcacagatctgagacctccacgtgggaatgctcacag
cccacacttggggtagtctagctgggacaagtgactcctgagagcccacg
tgcagatcactccaagccagtactcactggttttcttcccatcataaggt
ctctggactccacttccttccatccttgcctgtcccactgctccctcccc
tgcacactgcactctatttcttataacccccactgtcttcatgggactct
gatgtctcagtgacatctctgaaagctgctccactttggggtctgtcctt
cctctttttttttttttttttttgtttgtttgtttgttctttgtgataac
agtagtagttctttttccctgaagctcctaagatagctcagctccatgag
ccccaccatcccccaaaagccccaagtcaccatcccttcatgataggctc
tgaccttcaaaccaggtctgtcacagtgcaaggg
gaattcctactctgcctcagtttccccacctgtaaacttgggacatacct
caaaggaaaacgagtgaagaaacagctagaaacctagcagggtctgtgta
gaccgagggcttcagcagatggcactgagtggccgttctcagtgcctcac
ccccagatttttctcactctttccaacctcaggttccacagcctgagaaa
gttctagagtctctccctagcctggagaaatctctgacaatccccctttg
tctgggctcctgttctggcccactcagcatcatcttactgtgcctgtaaa
cctctgacaggtaccctggcttgcctccctcagtgtctacgcccatcccc
attaccccactggcccctggagcagggtgcacaggcagctgtggccctat
tgcaggactttggattatcttataaggacacttctgcagagagaggggag
ccctctctagggggacagcatctgtgattcctttccagcctgtgacatca
ctgtccttcagggaaagagaggctcagtgagccatctcgacttgctgggg
gacccatctctgtgtccatctcctctgtgtccatttcaggaaccactccg
tgaccgtaaggcttgccactcctgcctgtgggggatgggcccctgcacgc
agcccaggtggtcagttacctggtggaggagaaattcctgtggccactcc
acaggttgtatgagcctaaagtgctagccaggttctatgggttccagcat
cgcctgctgagaagccttttcaagggtaagtcctgcccacttcccggtcc
tctgcctgtgggatcctatagggcttcatgaccagtaggcacaggaaagc
ctgtcagtcccgtggaatcgcagcccagcccacaagttcctgggcttggt
gaggtcatctgggctactgaccctgctaggattctgtcaggaatataaag
tcctggctggctaggagctatcacaacatctggggtttccttctgaggca
gctctcccaaggggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10684520_10685400
seq2: B6Ng01-040C14.b_47_930

seq1  GAATTCAAGTCATCAAGCACTTTTATCCCCGAGCCTTCTGGCCAACGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCATCAAGCACTTTTATCCCCGAGCCTTCTGGCCAACGCAG  50

seq1  TGTTTCTTAAGGGAGGTCTAGGTGCAGCCCTTCTGCAGTACAGTCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAAGGGAGGTCTAGGTGCAGCCCTTCTGCAGTACAGTCAAAGA  100

seq1  GGGGTCCAGGAAAATGAGGTAGATGGGCACTGAGATCTGCTACAGGGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCAGGAAAATGAGGTAGATGGGCACTGAGATCTGCTACAGGGCGT  150

seq1  GCTAGAGTGACTGGAAGACATTGAGTCACCAGCACTGAGCACTCTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTGACTGGAAGACATTGAGTCACCAGCACTGAGCACTCTAGAGA  200

seq1  GCCATACAGGGAAGGAAGCTCCTGAGGCTGCCATCCCTAGGGCAGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAGGGAAGGAAGCTCCTGAGGCTGCCATCCCTAGGGCAGGCAGG  250

seq1  GAGGACTGTCTGCCACTGAACCCCACCTACATGCCCCATCCATCGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGTCTGCCACTGAACCCCACCTACATGCCCCATCCATCGCAGCA  300

seq1  CCTCAACACAATGGTGCCCTGTCTTCTGACTCCCAGGACAGCCCAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACACAATGGTGCCCTGTCTTCTGACTCCCAGGACAGCCCAAACCT  350

seq1  ACTCTCTTAAAAGATTCAGACTCTGGGCAAACTAGGGTTCCACTCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTAAAAGATTCAGACTCTGGGCAAACTAGGGTTCCACTCAGCAG  400

seq1  CTCTTCAGGTTCCTCACAGATCTGAGACCTCCACGTGGGAATGCTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGTTCCTCACAGATCTGAGACCTCCACGTGGGAATGCTCACAG  450

seq1  CCCACACTTGGGGTAGTCTAGCTGGGACAAGTGACTCCTGAGAGCCCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTTGGGGTAGTCTAGCTGGGACAAGTGACTCCTGAGAGCCCACG  500

seq1  TGCAGATCACTCCAAGCCAGTACTCACTGGTTTTCTTCCCATCATAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCACTCCAAGCCAGTACTCACTGGTTTTCTTCCCATCATAAGGT  550

seq1  CTCTGGACTCCACTTCCTTCCATCCTTGCCTGTCCCACTGCTCCCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACTCCACTTCCTTCCATCCTTGCCTGTCCCACTGCTCCCTCCCC  600

seq1  TGCACACTGCACTCTATTTCTTATAACCCCCACTGTCTTCATGGGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTGCACTCTATTTCTTATAACCCCCACTGTCTTCATGGGACTCT  650

seq1  GATGTCTCAGTGACATCTCTGAAAGCTGCTCCACTTTGGGGTCTGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCAGTGACATCTCTGAAAGCTGCTCCACTTTGGGGTCTGTCCTT  700

seq1  CCTC-TTTTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTCTTTGTGATAAC  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTCTTTGTGATAAC  750

seq1  AGTAGTAGTTCTTTTTCCCTGAAGCTCCTAAGATAGCTCAGCTCCATGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTTCTTTTTCCCTGAAGCTCCTAAGATAGCTCAGCTCCATGAG  800

seq1  CCCCACCATCCCCCAAAAGCCCCAAGTCACCAT-CCTTCATGATA-GCTC  847
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  CCCCACCATCCCCCAAAAGCCCCAAGTCACCATCCCTTCATGATAGGCTC  850

seq1  TGACCTTCAAACCAGGTCTGTCACAGTGCAAGGG  881
      ||||||||||||||||||||||||||||||||||
seq2  TGACCTTCAAACCAGGTCTGTCACAGTGCAAGGG  884

seq1: chr16_10867111_10868133
seq2: B6Ng01-040C14.g_70_1084 (reverse)

seq1  GCCCCCTGGGAGAAGGCTGGCCTCAGAAGGAACCCCCAGATGTTGTGTAT  50
      ||||| |||||||  ||| ||||||||||||| |||||||||||||| ||
seq2  GCCCCTTGGGAGA--GCT-GCCTCAGAAGGAAACCCCAGATGTTGTG-AT  46

seq1  GCCTCCTTAGCCAGCCAGGACTTTATATTCCTGACAGAATCCTAGCAGGG  100
        |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCC-TAGCCAGCCAGGACTTTATATTCCTGACAGAATCCTAGCAGGG  95

seq1  TCAGTAGCCCCAGATGACCTCACCAAGCCCAGGAACTTGTGGGGCTGGGC  150
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TCAGTAG-CCCAGATGACCTCACCAAGCCCAGGAACTTGT-GGGCTGGGC  143

seq1  TGCGATTCCACGGGACCTGACAGGCTTTCCTGTGCCTACTGGTCATGAAG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCGATTCCACGGGA-CTGACAGGCTTTCCTGTGCCTACTGGTCATGAAG  192

seq1  CCCTATAGGATCCCACAGGCAGAGGACCGGGAAGTGGGCAGGACTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGGATCCCACAGGCAGAGGACCGGGAAGTGGGCAGGACTTACCC  242

seq1  TTGAAAAGGCTTCTCAGCAGGCGATGCTGGAACCCATAGAACCTGGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGCTTCTCAGCAGGCGATGCTGGAACCCATAGAACCTGGCTAG  292

seq1  CACTTTAGGCTCATACAACCTGTGGAGTGGCCACAGGAATTTCTCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGGCTCATACAACCTGTGGAGTGGCCACAGGAATTTCTCCTCCA  342

seq1  CCAGGTAACTGACCACCTGGGCTGCGTGCAGGGGCCCATCCCCCACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAACTGACCACCTGGGCTGCGTGCAGGGGCCCATCCCCCACAGGC  392

seq1  AGGAGTGGCAAGCCTTACGGTCACGGAGTGGTTCCTGAAATGGACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGCAAGCCTTACGGTCACGGAGTGGTTCCTGAAATGGACACAGA  442

seq1  GGAGATGGACACAGAGATGGGTCCCCCAGCAAGTCGAGATGGCTCACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGACACAGAGATGGGTCCCCCAGCAAGTCGAGATGGCTCACTGA  492

seq1  GCCTCTCTTTCCCTGAAGGACAGTGATGTCACAGGCTGGAAAGGAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTCCCTGAAGGACAGTGATGTCACAGGCTGGAAAGGAATCAC  542

seq1  AGATGCTGTCCCCCTAGAGAGGGCTCCCCTCTCTCTGCAGAAGTGTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTCCCCCTAGAGAGGGCTCCCCTCTCTCTGCAGAAGTGTCCTT  592

seq1  ATAAGATAATCCAAAGTCCTGCAATAGGGCCACAGCTGCCTGTGCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAATCCAAAGTCCTGCAATAGGGCCACAGCTGCCTGTGCACCCT  642

seq1  GCTCCAGGGGCCAGTGGGGTAATGGGGATGGGCGTAGACACTGAGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGGGCCAGTGGGGTAATGGGGATGGGCGTAGACACTGAGGGAGG  692

seq1  CAAGCCAGGGTACCTGTCAGAGGTTTACAGGCACAGTAAGATGATGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGGGTACCTGTCAGAGGTTTACAGGCACAGTAAGATGATGCTGA  742

seq1  GTGGGCCAGAACAGGAGCCCAGACAAAGGGGGATTGTCAGAGATTTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCAGAACAGGAGCCCAGACAAAGGGGGATTGTCAGAGATTTCTCC  792

seq1  AGGCTAGGGAGAGACTCTAGAACTTTCTCAGGCTGTGGAACCTGAGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGGAGAGACTCTAGAACTTTCTCAGGCTGTGGAACCTGAGGTTG  842

seq1  GAAAGAGTGAGAAAAATCTGGGGGTGAGGCACTGAGAACGGCCACTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTGAGAAAAATCTGGGGGTGAGGCACTGAGAACGGCCACTCAGT  892

seq1  GCCATCTGCTGAAGCCCTCGGTCTACACAGACCCTGCTAGGTTTCTAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGCTGAAGCCCTCGGTCTACACAGACCCTGCTAGGTTTCTAGCT  942

seq1  GTTTCTTCACTCGTTTTCCTTTGAGGTATGTCCCAAGTTTACAGGTGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCACTCGTTTTCCTTTGAGGTATGTCCCAAGTTTACAGGTGGGG  992

seq1  AAACTGAGGCAGAGTAGGAATTC  1023
      |||||||||||||||||||||||
seq2  AAACTGAGGCAGAGTAGGAATTC  1015