BAC Information

Click to search

BAC

Clone NameB6Ng01-041D04
Chromosome16 (Build37)
Map Location 82,341,601 - 82,430,835
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260, EG545172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D04.bB6Ng01-041D04.g
ACCDH867928DH867929
length843943
definitionDH867928|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D04, 5' end.DH867929|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,429,994 - 82,430,835)(82,341,601 - 82,342,317)
sequence
gaattccagcctagctctgcattttaaacaggcaatctaaacatgttctc
agtggataagaataagccctgcagaactactttctaaactttgtattttt
ttccacagaaactcaacttcaaagatattctgaaaacaccataaagtttc
aaactacacagtgcctgcaaactttgcacatggctcccattgacatcaat
cagaattctatatgcatggactcagggcaaagcataaccttttatatggt
cgacaatatgtttgaaatggcgacaaaaatgtctgagacttcaaacacac
tgctgactttacagtttcaaaggacacttagttttaagaaccaaagcaat
ggtaagtatgttggattgtagtgccttaatttaaattttaaaaacctcag
aaggattttctttgcaatttaaaagtcaaaattaaattaccagaaaacat
ctacacagttgattatgtgttgattatttatgtgtgttttttgaatgtat
ttttatttggttgtttcttcatttgttaaataattggaaataacaaaagt
gatcttacagtatgtaatttagggagaaaatcatcacgtaaatatttcag
ttataaattctgaaacaagaatatcataaatgttatatcaggtgtattaa
aaataatttcagcaatccaagtagtgatgatttaagagtcacatataaaa
tatctttaagtgaccttttctgtttacatcctattcttcttgttgtgcat
gttgtgtaggttccaagaacatttctaatttctagaaactagcaataatg
gaagtagtatatggaggtgtggaagaaaattacatctccctgg
gaattcaggtgaccataactaagatgcctagtagtggggacatgaatcaa
gaagaggtcacctcctatacccagacaggactcccagtagaggggtaaga
acatcaactgaaccaaaaaaccttgccacacaaaatttgtcctgtggaga
gaaaatgcaggaatagagcacagactgaaggaatggttgatcaatagcaa
gcctgctaagtccactccaatttgaaatccattcagtgggcaagcaccaa
tccctgaccttattaacgtcagtcatgagcccagcataactgtcttctga
gaggctccaaccattagctgacttaaacagatacagatatcaatagtcaa
atattggacagaagtttcagaattcttatggaacagttaggggaaggatt
ggaggtcttgtaatgactcggaatcccacaggaagaccacaagaatcaac
taatctggacccctggagctctcagaaactaagccaccaaccagagaacc
ttcagggactagaacataagtagcagacgttcagctcagtttccatgtct
ggcctcagtggaagaggatggacttaatttggcagagacttgatggacca
gaagatacacagggagccacacacaccttctcagaaggagaatgggagag
ggacagtgtgttgtgggacgagcagcatttgggatgaaaagagagagaga
gagagagagagagagagagagagagagagaaatcttaggatctctccaaa
gataaagagttagcctgcatattttcactttagcctctcaaaatgaaagc
ccagatcattgatttgattggtgtttttgtttttgtttgttgttttgttt
aaattatgcatttggtgatattcataataataaaataaaaataacataac
ataaactagagaatttaccattgtggactgaatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82429994_82430835
seq2: B6Ng01-041D04.b_46_888 (reverse)

seq1  CCAGGGAGATGTAATTTTCTTCCACACCTCCATATACTACTTCCATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGATGTAATTTTCTTCCACACCTCCATATACTACTTCCATTATT  50

seq1  GCTAGTTTCTAGAAATTAG-AATGTTCTTGGAACCTACACAACATTGCAC  99
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GCTAGTTTCTAGAAATTAGAAATGTTCTTGGAACCTACACAACA-TGCAC  99

seq1  AACAAGAAGAATAGGATGTAAACAG-AAAGGTCACTTAAAGATATTTTAT  148
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACAAGAAGAATAGGATGTAAACAGAAAAGGTCACTTAAAGATATTTTAT  149

seq1  ATGTGACTCTTAAATCATCACTACTTGGATTGCTGAAATTATTTTTAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTCTTAAATCATCACTACTTGGATTGCTGAAATTATTTTTAATA  199

seq1  CACCTGATATAACATTTATGATATTCTTGTTTCAGAATTTATAACTGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATATAACATTTATGATATTCTTGTTTCAGAATTTATAACTGAAA  249

seq1  TATTTACGTGATGATTTTCTCCCTAAATTACATACTGTAAGATCACTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACGTGATGATTTTCTCCCTAAATTACATACTGTAAGATCACTTTT  299

seq1  GTTATTTCCAATTATTTAACAAATGAAGAAACAACCAAATAAAAATACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCCAATTATTTAACAAATGAAGAAACAACCAAATAAAAATACAT  349

seq1  TCAAAAAACACACATAAATAATCAACACATAATCAACTGTGTAGATGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAACACACATAAATAATCAACACATAATCAACTGTGTAGATGTTT  399

seq1  TCTGGTAATTTAATTTTGACTTTTAAATTGCAAAGAAAATCCTTCTGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAATTTAATTTTGACTTTTAAATTGCAAAGAAAATCCTTCTGAGG  449

seq1  TTTTTAAAATTTAAATTAAGGCACTACAATCCAACATACTTACCATTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTTAAATTAAGGCACTACAATCCAACATACTTACCATTGCT  499

seq1  TTGGTTCTTAAAACTAAGTGTCCTTTGAAACTGTAAAGTCAGCAGTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTAAAACTAAGTGTCCTTTGAAACTGTAAAGTCAGCAGTGTGT  549

seq1  TTGAAGTCTCAGACATTTTTGTCGCCATTTCAAACATATTGTCGACCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCTCAGACATTTTTGTCGCCATTTCAAACATATTGTCGACCATA  599

seq1  TAAAAGGTTATGCTTTGCCCTGAGTCCATGCATATAGAATTCTGATTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTATGCTTTGCCCTGAGTCCATGCATATAGAATTCTGATTGAT  649

seq1  GTCAATGGGAGCCATGTGCAAAGTTTGCAGGCACTGTGTAGTTTGAAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGGAGCCATGTGCAAAGTTTGCAGGCACTGTGTAGTTTGAAACT  699

seq1  TTATGGTGTTTTCAGAATATCTTTGAAGTTGAGTTTCTGTGGAAAAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGTTTTCAGAATATCTTTGAAGTTGAGTTTCTGTGGAAAAAAAT  749

seq1  ACAAAGTTTAGAAAGTAGTTCTGCAGGGCTTATTCTTATCCACTGAGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTAGAAAGTAGTTCTGCAGGGCTTATTCTTATCCACTGAGAAC  799

seq1  ATGTTTAGATTGCCTGTTTAAAATGCAGAGCTAGGCTGGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGATTGCCTGTTTAAAATGCAGAGCTAGGCTGGAATTC  843

seq1: chr16_82341601_82342317
seq2: B6Ng01-041D04.g_297_1008

seq1  TTCAGTGGGCAAGCACCAATCCCTGACCTTATTAACGTCAGTCATGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGGCAAGCACCAATCCCTGACCTTATTAACGTCAGTCATGAGCC  50

seq1  CAGCATAACTGTCTTCTGAGAGGCTCCAACCATTAGCTGACTTAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAACTGTCTTCTGAGAGGCTCCAACCATTAGCTGACTTAAACAGA  100

seq1  TACAGATATCAATAGTCAAATATTGGACAGAAGTTTCAGAATTCTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATCAATAGTCAAATATTGGACAGAAGTTTCAGAATTCTTATGG  150

seq1  AACAGTTAGGGGAAGGATTGGAGGTCTTGTAATGACTCGGAATCCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAGGGGAAGGATTGGAGGTCTTGTAATGACTCGGAATCCCACAG  200

seq1  GAAGACCACAAGAATCAACTAATCTGGACCCCTGGAGCTCTCAGAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCACAAGAATCAACTAATCTGGACCCCTGGAGCTCTCAGAAACTA  250

seq1  AGCCACCAACCAGAGAACCTTCAGGGACTAGAACATAAGTAGCAGACGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAACCAGAGAACCTTCAGGGACTAGAACATAAGTAGCAGACGTT  300

seq1  CAGCTCAGTTTCCATGTCTGGCCTCAGTGGAAGAGGATGGACTTAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTTTCCATGTCTGGCCTCAGTGGAAGAGGATGGACTTAATTTG  350

seq1  GCAGAGACTTGATGGACCAGAAGATACACAGGGAGCCACACACACCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTTGATGGACCAGAAGATACACAGGGAGCCACACACACCTTCT  400

seq1  CAGAAGGAGAATGGGAGAGGGACAGTGTGTTGTGGGACGAGCAGCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAGAATGGGAGAGGGACAGTGTGTTGTGGGACGAGCAGCATTTG  450

seq1  GGATGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  500

seq1  ATCTTAGGATCTCTCCAAAGATAAAGAGTTAGCCTGCATATTTTCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGATCTCTCCAAAGATAAAGAGTTAGCCTGCATATTTTCACTTT  550

seq1  AGCCTCTCAAAATGAAAGCCCAGATCATTGATTTGATTGGTGTTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAAAATGAAAGCCCAGATCATTGATTTGATTGGTGTTTTTGTT  600

seq1  TTTGTTTGTTGTTTTGTTTAAATTATGCATTTGGTGATATACAATAAATA  650
      |||||||||||||||||||||||||||||||||||||||| | ||||   
seq2  TTTGTTTGTTGTTTTGTTTAAATTATGCATTTGGTGATATTC-ATAA--T  647

seq1  AATAAAATAAAAAATAACATAACATAAACTAGAGAATTTTACCATTGT-G  699
      |||||||| ||||||||||||||||||||||||||| ||||||||||| |
seq2  AATAAAAT-AAAAATAACATAACATAAACTAGAGAA-TTTACCATTGTGG  695

seq1  ACTGTAATATATATATAT  717
      |||| |||||||||||||
seq2  ACTG-AATATATATATAT  712