BAC Information

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BAC

Clone NameB6Ng01-042K24
Chromosome16 (Build37)
Map Location 81,369,546 - 81,370,610
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K24.bB6Ng01-042K24.g
ACCDH868985DH868986
length1,152787
definitionDH868985|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K24, 5' end.DH868986|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtagggctaagtttatgtatttaagccatagccacttgacac
aggtgcaacagtaagcgtgctcctccttgggaagacatcctctctgtcac
attgttacatggttgtctataataaatatttctatggagctgaagtctca
tgtttttgttgttgttgttttgttttgtttttgtccagcttggcattgat
ttcttccttgttcagctcacctttagaaactcatgctgttaagattttaa
ggcttaagattcttgttttactaggagacacaagctctggctgttagaat
cttcccatgccctcttaggcaatgttccctgagctttcagtgagagagtt
ttgtaggtatatacattgggacctggttctacagctgtgcatttttattg
actggggttttctataatagtctccatctgttgcaaatagatctttgctt
gtggaggggtgaaaactctacacacctgctgctggtaaagacaaatactt
attttcattctaagagattgtactggtttagcaaatcaaattttgtagat
tctttctcagtaaccatggctttattagaactgagtatttattatgtttc
caggtttttgttttgagcagtgtctttcaaacccggggctcccgtatatg
gtcaatgtctttaattatcttttaccaaagatccatggtcttttccttcc
taaattgaaattactggagagacactatatacatccagtatgtacatagg
ttctatcactatagctatagttattttgtttgtgttaaatacttcaccac
tgaactatattcccgtctcacaaagtttacaaactatttttaaacaagtg
atgcaactagtatcacatccatgagtaaagctcaaaattgttaatatttt
cttcagaaatgaaaactggcattattttattttaaaaaaatttattggct
atttatttatttacattccaaatgttatcccccttccggtttcccttcac
aaaccccctatcccatccctcttttcctgcttaatgaggggtgcttcata
ccacccacccacccatctacttcctaccctacagtcctatactgaagcat
tgatctttacaggactaaggcctccttctcattgattccagataagcaat
cc

gaattccaagtgaggaatcttaaatggctgagaagcacctaaagaaatgg
tcaatatccttagtcatcagggaaatgcaaatcaaaatgaccctgagatt
ccacctcacacaaatcagaatgcctaaatctcaggagacagcagatgttg
ctgaggatactgaaaaagaggaacacttctccattgctggtgagattgca
agctgattcaatcaccttggaaattaatctggctgttcctcagaaaattg
gaagtagctctacctaaagacccaattataccactcctaggtatataccc
agaagatgctccaaaatataacaagatgtagatactcaacctacaacatc
actccattatgttcatagcagccttctttataattgccagtaatgggaaa
caacccagatgccctacatccaaagactggatacagaaaatgtggtgtat
ttgcacattagaacactactcatctattaaaagtgatgatttaatgaagc
ttgtaggcaaattcatggtactagaacctaatatcctgagtgaggtaaac
cagagccaaaaggccatgcttggtatgtcttgactgatatgtattagccc
caaatctcagaattccaatgatacaactcacagaccatctgaagcttaac
aagaaggaagcccacagtgtagatgcttcaaacacacttagaagagggaa
gaaaataatcacaggaggcagagggagggaaggacctgaatggtagagaa
gagggggagaaaataaagtgtgtgtttgtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81369546_81370610
seq2: B6Ng01-042K24.b_145_1190

seq1  ACATGGTTGTCTATAATAAATATTTCTATGGAGCTGAAGTCTCATGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTGTCTATAATAAATATTTCTATGGAGCTGAAGTCTCATGTTTT  50

seq1  TGTTGTTGTTGTTTTGTTTTGTTTTTGTCCAGCTTGGCATTGATTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTTTGTTTTGTTTTTGTCCAGCTTGGCATTGATTTCTTC  100

seq1  CTTGTTCAGCTCACCTTTAGAAACTCATGCTGTTAAGATTTTAAGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAGCTCACCTTTAGAAACTCATGCTGTTAAGATTTTAAGGCTTA  150

seq1  AGATTCTTGTTTTACTAGGAGACACAAGCTCTGGCTGTTAGAATCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGTTTTACTAGGAGACACAAGCTCTGGCTGTTAGAATCTTCCC  200

seq1  ATGCCCTCTTAGGCAATGTTCCCTGAGCTTTCAGTGAGAGAGTTTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTAGGCAATGTTCCCTGAGCTTTCAGTGAGAGAGTTTTGTAG  250

seq1  GTATATACATTGGGACCTGGTTCTACAGCTGTGCATTTTTATTGACTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACATTGGGACCTGGTTCTACAGCTGTGCATTTTTATTGACTGGG  300

seq1  GTTTTCTATAATAGTCTCCATCTGTTGCAAATAGATCTTTGCTTGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATAATAGTCTCCATCTGTTGCAAATAGATCTTTGCTTGTGGAG  350

seq1  GGGTGAAAACTCTACACACCTGCTGCTGGTAAAGACAAATACTTATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAACTCTACACACCTGCTGCTGGTAAAGACAAATACTTATTTTC  400

seq1  ATTCTAAGAGATTGTACTGGTTTAGCAAATCAAATTTTGTAGATTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGAGATTGTACTGGTTTAGCAAATCAAATTTTGTAGATTCTTTC  450

seq1  TCAGTAACCATGGCTTTATTAGAACTGAGTATTTATTATGTTTCCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACCATGGCTTTATTAGAACTGAGTATTTATTATGTTTCCAGGTT  500

seq1  TTTGTTTTGAGCAGTGTCTTTCAAACCCGGGGCTCCCGTATATGGTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAGCAGTGTCTTTCAAACCCGGGGCTCCCGTATATGGTCAAT  550

seq1  GTCTTTAATTATCTTTTACCAAAGATCCATGGTCTTTTCCTTCCTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATTATCTTTTACCAAAGATCCATGGTCTTTTCCTTCCTAAATT  600

seq1  GAAATTACTGGAGAGACACTATATACATCCAGTATGTACATAGGTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTGGAGAGACACTATATACATCCAGTATGTACATAGGTTCTAT  650

seq1  CACTATAGCTATAGTTATTTTGTTTGTGTTAAATACTTCACCACTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGCTATAGTTATTTTGTTTGTGTTAAATACTTCACCACTGAACT  700

seq1  ATATTCCCGTCTCACAAAGTTTACAAACTATTTTTAAACAAGTGATGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCGTCTCACAAAGTTTACAAACTATTTTTAAACAAGTGATGCAA  750

seq1  CTAGTATCACATCCATGAGTAAAGCTCAAAATTGTTAATATTTTCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATCACATCCATGAGTAAAGCTCAAAATTGTTAATATTTTCTTCAG  800

seq1  AAATGAAAACTGGCATTATTTTATTTTAAAAAAATTTATTGGCTATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATGAAAACTGGCATTATTTTATTTTAAAAAAATTTATTGGCTA-TTTA  849

seq1  TTTATTTACATTCCAAATGTTATCCCCCTTCCCGTTTTCCCCTTCCACAA  900
      |||||||||||||||||||||||||||||||| ||||  ||||| |||||
seq2  TTTATTTACATTCCAAATGTTATCCCCCTTCCGGTTT--CCCTT-CACAA  896

seq1  ACCCCCTATCCCATCCCTTCTTTCCCTGCTTAATTGAGGGTGCTTCAATA  950
      ||||||||||||||||| ||||| ||||||||||   ||||||||| |||
seq2  ACCCCCTATCCCATCCC-TCTTTTCCTGCTTAATGAGGGGTGCTTC-ATA  944

seq1  CCCACCCACCCACCCATTCCTACCTCACTACCCTAACAGTCCCCTACACT  1000
       ||||||||||||||||  |||| || ||||||| |||||  |||| |||
seq2  -CCACCCACCCACCCAT--CTACTTC-CTACCCT-ACAGT--CCTATACT  987

seq1  GAGGCATTGATCCTTTACAGGACCAAAGGCCTCCCATCTCACATTGATTC  1050
      || |||||||| |||||||||| | |||||||||    || |||||||||
seq2  GAAGCATTGAT-CTTTACAGGA-CTAAGGCCTCC---TTCTCATTGATTC  1032

seq1  CAGATAAGGCAATCC  1065
      ||||||| |||||||
seq2  CAGATAA-GCAATCC  1046


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