BAC Information

Click to search

BAC

Clone NameB6Ng01-042N10
Chromosome16 (Build37)
Map Location 83,218,554 - 83,317,737
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N10.bB6Ng01-042N10.g
ACCDH869090DH869091
length1,162664
definitionDH869090|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N10, 5' end.DH869091|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,316,563 - 83,317,737)(83,218,554 - 83,219,221)
sequence
gaattctcatatgttggatcttttcaggagaccaaaaagagcacatctct
aaccacctttaacaccaatacctttccttagaacagcagccaatgaccaa
acaacccttaggaatcttttttggtattaggtatcaatatttatctgctt
tggttgtattttagtagcagatacacataagcaactattcaggggatttt
taggtgtattattccatgagtttttgttttgtcttattaaattataaacg
aaaatgtcggtctatgctcagattacatgcatgtatgcaaatctttatac
aagaaataaattgtatggttatttttatatcagtgaatttgacacaagca
cacagatcattaattcatatccagattatgcttactcccctctctgtaac
tcaaactgtgctaccccaaaccttctactctaaaagtcatcttttaattt
ctacttcattgattgtaatgtgtatgtggaaagcacaacatgcataactg
aaacaagttttagataatgtagaatatttataatgcatagatgtaattgc
atttgagtcttgcataatccactgggacttgtgactaaaagaataaaatc
taaagcttgatgtttaaaagattttcagttttgaaattgggaagaagtac
agagttgcaatatcaggatttcaaaactgtcttgaaatgggagtgaaatg
aaccaagcttacgtgatgatgaaaattagccagattattctgtttcttac
tggagaatcaggaaaacacacaaatatttaaacaggaactgcacaaacac
agagaaaagaaaaccctgtgctggttaaaaaacaaagcaaaccaaaccaa
aacaaaacaaaaaacctaatatgacagtttgtgacagcaaatcaaaggca
gaagcagtgagtcaagctaacggcatgagtcattgtgcaccacactgcca
agaaagtcattttcatcgggttatatgatagacatgcagaataagaacag
tgatgtgagctcaaagtcaggacagtgacagcttctgcctgtccttgggt
agaatctcgtgtgtcagttatatcactgacgtttagagaggaattgataa
agaggatgacatcaagctggagcccagcatcgagaggaatgaagcatgac
gatgtagcctcc
gaattcattttacactgtctatggatagtcaaatatgctcaaaatacaca
tcagttttgagaattgtaacttgaggaagcttcagataaatgaaataaaa
tattttttttcaattttcagaggcaggaaatagtcctgtttcactcaagc
ctcatgtttattttgcatttgatataatatttcccagtccagcaataata
ggggtgaatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatttatatttatatatatataaatgtagggaaa
aagagagagggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtga
gtatgtatttctctttctcagataacttctggctaatggaacaaattttg
gaatttcccataatgtttactgtatgtgctctcattcataagtggtggaa
taaattgctcttttaatatcatattttaattgctggtatgttagaataat
ctgcctatgtatatgtatatattttttttttattatctatatactgattt
ctataccacaaaatattgagtattgtccagatgttgctattgttatttac
tggggtatctcctgctgattatatagtaatcattcttctcctatatcttc
tgactaatttaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_83316563_83317737
seq2: B6Ng01-042N10.b_46_1207 (reverse)

seq1  GGAGGCTTCATCTGTCATGCTGTCAATTCCCTTCTCGATGCTGGGCTCCA  50
      ||||||| |||| |||||||| || |||||  ||||||||||||||||||
seq2  GGAGGCTACATC-GTCATGCT-TC-ATTCC--TCTCGATGCTGGGCTCCA  45

seq1  GCTCTGAATGTCATCCTCTTTATCAATATCTCTCTAAACGTCAGTGATTA  100
      ||| || ||||||||||||||||||||  |||||||||||||||||| ||
seq2  GCT-TG-ATGTCATCCTCTTTATCAATTCCTCTCTAAACGTCAGTGA-TA  92

seq1  TAACTGAACACACCGAGATTCTACCCAAGGACAGGCAG-AGCTGTCACTG  149
      |||||| ||||| ||||||||||||||||||||||||| |||||||||||
seq2  TAACTG-ACACA-CGAGATTCTACCCAAGGACAGGCAGAAGCTGTCACTG  140

seq1  TCCTGACTTTGAGCTCACATCACTGTTCTTATTCTGCATGTCTATCAATA  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTGACTTTGAGCTCACATCACTGTTCTTATTCTGCATGTCTATC-ATA  189

seq1  TAACCCGATGAAAATGACTTTTCTTGGCAGTGTGGTGCACAATGACTCAT  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCCGATGAAAATGAC-TTTCTTGGCAGTGTGGTGCACAATGACTCAT  238

seq1  GCCGTTAGCTTGACTCACTGCTTCTGCCTTTGATTTTGCTGTCACAAACT  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCGTTAGCTTGACTCACTGCTTCTGCCTTTGA-TTTGCTGTCACAAACT  287

seq1  GTCATATTAGGTTTTTTGTTTTGTTTTGGTTTGGTTTGCTTTGTTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCATATTAGGTTTTTTGTTTTGTTTTGGTTTGGTTTGCTTTG-TTTTTT  336

seq1  AACCAGCACAGGGTTTTCTTTTCTCTGTGTTTGTGCAGTTCCTGTTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCACAGGGTTTTCTTTTCTCTGTGTTTGTGCAGTTCCTGTTTAAA  386

seq1  TATTTGTGTGTTTTCCTGATTCTCCAGTAAGAAACAGAATAATCTGGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTGTTTTCCTGATTCTCCAGTAAGAAACAGAATAATCTGGCTA  436

seq1  ATTTTCATCATCACGTAAGCTTGGTTCATTTCACTCCCATTTCAAGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCATCACGTAAGCTTGGTTCATTTCACTCCCATTTCAAGACAG  486

seq1  TTTTGAAATCCTGATATTGCAACTCTGTACTTCTTCCCAATTTCAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATCCTGATATTGCAACTCTGTACTTCTTCCCAATTTCAAAACT  536

seq1  GAAAATCTTTTAAACATCAAGCTTTAGATTTTATTCTTTTAGTCACAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTTTAAACATCAAGCTTTAGATTTTATTCTTTTAGTCACAAGT  586

seq1  CCCAGTGGATTATGCAAGACTCAAATGCAATTACATCTATGCATTATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGATTATGCAAGACTCAAATGCAATTACATCTATGCATTATAAA  636

seq1  TATTCTACATTATCTAAAACTTGTTTCAGTTATGCATGTTGTGCTTTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACATTATCTAAAACTTGTTTCAGTTATGCATGTTGTGCTTTCCA  686

seq1  CATACACATTACAATCAATGAAGTAGAAATTAAAAGATGACTTTTAGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATTACAATCAATGAAGTAGAAATTAAAAGATGACTTTTAGAGT  736

seq1  AGAAGGTTTGGGGTAGCACAGTTTGAGTTACAGAGAGGGGAGTAAGCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTGGGGTAGCACAGTTTGAGTTACAGAGAGGGGAGTAAGCATA  786

seq1  ATCTGGATATGAATTAATGATCTGTGTGCTTGTGTCAAATTCACTGATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATATGAATTAATGATCTGTGTGCTTGTGTCAAATTCACTGATAT  836

seq1  AAAAATAACCATACAATTTATTTCTTGTATAAAGATTTGCATACATGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACCATACAATTTATTTCTTGTATAAAGATTTGCATACATGCAT  886

seq1  GTAATCTGAGCATAGACCGACATTTTCGTTTATAATTTAATAAGACAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGAGCATAGACCGACATTTTCGTTTATAATTTAATAAGACAAAA  936

seq1  CAAAAACTCATGGAATAATACACCTAAAAATCCCCTGAATAGTTGCTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTCATGGAATAATACACCTAAAAATCCCCTGAATAGTTGCTTAT  986

seq1  GTGTATCTGCTACTAAAATACAACCAAAGCAGATAAATATTGATACCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGCTACTAAAATACAACCAAAGCAGATAAATATTGATACCTAA  1036

seq1  TACCAAAAAAGATTCCTAAGGGTTGTTTGGTCATTGGCTGCTGTTCTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAAAGATTCCTAAGGGTTGTTTGGTCATTGGCTGCTGTTCTAAG  1086

seq1  GAAAGGTATTGGTGTTAAAGGTGGTTAGAGATGTGCTCTTTTTGGTCTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTATTGGTGTTAAAGGTGGTTAGAGATGTGCTCTTTTTGGTCTCC  1136

seq1  TGAAAAGATCCAACATATGAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  TGAAAAGATCCAACATATGAGAATTC  1162

seq1: chr16_83218554_83219221
seq2: B6Ng01-042N10.g_65_728

seq1  GAATTCATTTTACACTGTCTATGGATAGTCAAATATGCTCAAAATACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTACACTGTCTATGGATAGTCAAATATGCTCAAAATACACA  50

seq1  TCAGTTTTGAGAATTGTAACTTGAGGAAGCTTCAGATAAATGAAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTGAGAATTGTAACTTGAGGAAGCTTCAGATAAATGAAATAAAA  100

seq1  TATTTTTTTTCAATTTTCAGAGGCAGGAAATAGTCCTGTTTCACTCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTCAATTTTCAGAGGCAGGAAATAGTCCTGTTTCACTCAAGC  150

seq1  CTCATGTTTATTTTGCATTTGATATAATATTTCCCAGTCCAGCAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTATTTTGCATTTGATATAATATTTCCCAGTCCAGCAATAATA  200

seq1  GGGGTGAATATATATATATATATATATATATATATATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAATATATATATATATATATATATATATATATATATATATATATA  250

seq1  TCCTGAAAAATAAAACATA-TTATAATATTATATATGGAAATGTTGGGCA  299
      |    | | || | | ||| ||||| |  |||||||  |||||| ||| |
seq2  TATATATATAT-ATATATATTTATATTTATATATATATAAATGTAGGGAA  299

seq1  ACTATAAAA----GTATTTCATAGTTCCAAAACAAAACCTAGAAGAG-GC  344
      |     | |    || | |    ||              |    | | | 
seq2  AAAGAGAGAGGGGGTGTGTGTGTGT-----GTGTGTGTGTGTGTGTGTGT  344

seq1  ATCTTAAACTGTAGTTCTCATTCTCAGATAACTTCTGGCTAATGGAACAA  394
       | | |   |||| ||||| ||||||||||||||||||||||||||||||
seq2  GTGTGAGTATGTATTTCTCTTTCTCAGATAACTTCTGGCTAATGGAACAA  394

seq1  ATTTTGGAATTTCCCATAATGTTTACTGTATGTGCTCTCATTCATAAGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAATTTCCCATAATGTTTACTGTATGTGCTCTCATTCATAAGTG  444

seq1  GTGGAATAAATTGCTCTTTTAATATCATATTTTAATTGCTGGTATGTTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATAAATTGCTCTTTTAATATCATATTTTAATTGCTGGTATGTTAG  494

seq1  AATAATCTTCTTATGTACTATGTAAAAGTTATCTTCATATTATCTAAACA  544
      |||||||| | |||||| |||||| |  || | ||  ||||||||| | |
seq2  AATAATCTGCCTATGTA-TATGTATATATTTTTTTTTTATTATCTATATA  543

seq1  CTGATTTCTATACCAGCAGAATATTGAGTATTGTCCAGATGTTGCTATTG  594
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  CTGATTTCTATACCA-CAAAATATTGAGTATTGTCCAGATGTTGCTATTG  592

seq1  TTAATTTTACTGGGGTATCACCTGCTGATTATTTTGTAAACATTCTTCTC  644
      |||  |||||||||||||| |||||||||||| | |||| ||||||||||
seq2  TTA--TTTACTGGGGTATCTCCTGCTGATTATATAGTAATCATTCTTCTC  640

seq1  CATTACCTTCTGACTAGTTTAATA  668
      |  || |||||||||| |||||||
seq2  CTATATCTTCTGACTAATTTAATA  664