BAC Information

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BAC

Clone NameB6Ng01-043O10
Chromosome16 (Build37)
Map Location 89,347,853 - 89,490,734
singlet/doubletdoublet
Overlap geneLOC100040456, Krtap21-1, Krtap6-2
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043O10.bB6Ng01-043O10.g
ACCDH869819DH869820
length1,0861,055
definitionDH869819|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O10, 5' end.DH869820|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,489,652 - 89,490,734)(89,347,853 - 89,348,911)
sequence
gaattctcctctccgaggctctgccaattcacccggagtatgtgttgtga
gcattcatggctagaacttatttcctgggatgcatctctgttgtgacatc
cagcccaggaaggatgattgagggaacagtttgaagtgatggagccagaa
attcatttatgggaaagaaaaatatagaagtttgtcaggcagctaagaat
acagtattcgctcctggatttcctaacgtttgttgttcttgttggcattt
aatttcttttgtgtttttaccttcgcactgattctttatttatgttgttt
tcctatttgtgaggaaggctcccgataagtacgaagttcagactgtgtaa
catgaatcctctttgagcatcatgtattagaaaaaaaagctttcatatat
tcagttgggttgggttggccattatttttaaaagtgacttatggagaaac
aatgggttttcctgaaaatttctctttgcattttttttttttttttgggt
ataaattgagaatagaatccaggctattttctattaaaagggttatgctt
atttaaaaggatggcatatataaattctttatcactcatatacaaagctg
tatattacatcaccaagggcaaaaatcagcatgtgtcagattcagtgagt
gggagaggaatttgtttaatcaggcttttataattgaaccttggcattga
ttcaaaactttttttttctgttatacaacacattttgtttgattttattc
ttttcctaacacacctgcatttttgttattagatgaaataatattatgat
ggttacaatatattataactcgttctaaggattttaggaaatgttttcca
gtatcttaacattcatgaatgaggctcaggttaattttctggccccttta
gttgtacatccacatgaagaacttgaattttaagttctgaatcagtatag
gcagcaccctccttatgagcagggtggtggggcaactcttgtgtttccaa
attgcttcccgcttaaataaaccaataatggtaggaccactggcatagct
ctgagtttctcctaccgagtctgatttttttgtcct
gaattctttgtctgggcttttctgtctgcagtctgtatatagggcatatc
ctcttctatctgtaaaacctgattctctcttgagaggacatttataagcc
acacgcataatgtactgcagtctcaccttctcaagcttaactgaacaact
attaaacactctttatccaaataaagtgatattgatgagttctaaatatt
gggacctgattctttgaagggctattatttacttaacttcctacagttta
ttccacttactaaatagcactgaagacaagaaattcactgtgtggtaaat
atgtgttatagcaagctagatggtaataacaggtgtggtttgggtaggct
gtctagagtatggtaaaaggaactgtgatttcagaaattggagacaaaaa
tagcttgtatttagaataccttctttgaatgggcttcattaagcctaacg
gaggaataaaatgggtgaactatactcacacctgcaggaaaagagagact
ctgtaaggaaaatagtccctatgtttttgaaaagtaaagaccccctcatg
gtcaccatagagaaagcactggaaaaacagtacacatcttaggaggtgag
aaatgtccttgcagactagtaaataactttaatttttacagaggaaaaca
aggaagcattggggtttggagaagacataggaatggtcttatgttttgaa
atttcatgttgacagctatgttagaaagggactatagggagtagaaggag
attcctggccctgtgcagaatctttgcattcatctagatgaatattggta
ggggtcagagctatggatattaattccagatgtattttggaaagtggcgc
caaatctatttcctgaggagctagacatgaaaggcaattgtggttttacc
attttttttattaaatgggatgaacctgctattaactgaggtaaagaaag
cattaggtggtaaaaggttaggggaaagaattatgagttaagtttgatct
tttcgattgatcagactcatgtgccattggacagttggctgtataactgg
gaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89489652_89490734
seq2: B6Ng01-043O10.b_47_1132 (reverse)

seq1  AGGACAAAAAAATCAGACTC-GTA-GAGAAACTCAAAGCTATGCCAGTGT  48
      |||||||||||||||||||| ||| |||||||||| ||||||||||||| 
seq2  AGGACAAAAAAATCAGACTCGGTAGGAGAAACTCAGAGCTATGCCAGTGG  50

seq1  TCTAACCACTAATTGTTTAATTACAGC-AGAAGCAATTTTGAAAACAC-A  96
      ||  |||| || | ||||| ||| |||  ||||||| |||| |||||| |
seq2  TCCTACCATTATTGGTTTATTTA-AGCGGGAAGCAA-TTTGGAAACACAA  98

seq1  GAGTTGCCCCACCACCCTGCTCATAAGTAGGGTGCTGCCTATACTGATTC  146
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGTTGCCCCACCACCCTGCTCATAAGGAGGGTGCTGCCTATACTGATTC  148

seq1  AGAACTTAAAATTCAAGTTCTTCATGT-GATGTACAACTAAAGGGGCCAG  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAACTTAAAATTCAAGTTCTTCATGTGGATGTACAACTAAAGGGGCCAG  198

seq1  AAAATTACCCTGAGCCTCATTCATGAATGTTAAGATACTGGAAAACATTT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACCTGAGCCTCATTCATGAATGTTAAGATACTGGAAAACATTT  248

seq1  CCTAAAATCCTTAGAACGAGTTATAATATATTGTAACCATCATAATATTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATCCTTAGAACGAGTTATAATATATTGTAACCATCATAATATTA  298

seq1  TTTCATCTAATAACAAAAATGCAGGTGTGTTAGGAAAAGAATAAAATCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTAATAACAAAAATGCAGGTGTGTTAGGAAAAGAATAAAATCAA  348

seq1  ACAAAATGTGTTGTATAACAGAAAAAAAAAGTTTTGAATCAATGCCAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTGTTGTATAACAGAAAAAAAAAGTTTTGAATCAATGCCAAGG  398

seq1  TTCAATTATAAAAGCCTGATTAAACAAATTCCTCTCCCACTCACTGAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATAAAAGCCTGATTAAACAAATTCCTCTCCCACTCACTGAATC  448

seq1  TGACACATGCTGATTTTTGCCCTTGGTGATGTAATATACAGCTTTGTATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGCTGATTTTTGCCCTTGGTGATGTAATATACAGCTTTGTATA  498

seq1  TGAGTGATAAAGAATTTATATATGCCATCCTTTTAAATAAGCATAACCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATAAAGAATTTATATATGCCATCCTTTTAAATAAGCATAACCCT  548

seq1  TTTAATAGAAAATAGCCTGGATTCTATTCTCAATTTATACCAAAAAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAATAGAAAATAGCCTGGATTCTATTCTCAATTTATACCCAAAAAAAA  598

seq1  AAAAAAAATGCAAAGAGAAATTTTCAGGAAAACCCATTGTTTCTCCATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGCAAAGAGAAATTTTCAGGAAAACCCATTGTTTCTCCATAA  648

seq1  GTCACTTTTAAAAATAATGGCCAACCCAACCCAACTGAATATATGAAAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTTAAAAATAATGGCCAACCCAACCCAACTGAATATATGAAAGC  698

seq1  TTTTTTTTCTAATACATGATGCTCAAAGAGGATTCATGTTACACAGTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTAATACATGATGCTCAAAGAGGATTCATGTTACACAGTCTG  748

seq1  AACTTCGTACTTATCGGGAGCCTTCCTCACAAATAGGAAAACAACATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGTACTTATCGGGAGCCTTCCTCACAAATAGGAAAACAACATAAA  798

seq1  TAAAGAATCAGTGCGAAGGTAAAAACACAAAAGAAATTAAATGCCAACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCAGTGCGAAGGTAAAAACACAAAAGAAATTAAATGCCAACAA  848

seq1  GAACAACAAACGTTAGGAAATCCAGGAGCGAATACTGTATTCTTAGCTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAAACGTTAGGAAATCCAGGAGCGAATACTGTATTCTTAGCTGC  898

seq1  CTGACAAACTTCTATATTTTTCTTTCCCATAAATGAATTTCTGGCTCCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAACTTCTATATTTTTCTTTCCCATAAATGAATTTCTGGCTCCAT  948

seq1  CACTTCAAACTGTTCCCTCAATCATCCTTCCTGGGCTGGATGTCACAACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAAACTGTTCCCTCAATCATCCTTCCTGGGCTGGATGTCACAACA  998

seq1  GAGATGCATCCCAGGAAATAAGTTCTAGCCATGAATGCTCACAACACATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCATCCCAGGAAATAAGTTCTAGCCATGAATGCTCACAACACATA  1048

seq1  CTCCGGGTGAATTGGCAGAGCCTCGGAGAGGAGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGTGAATTGGCAGAGCCTCGGAGAGGAGAATTC  1086

seq1: chr16_89347853_89348911
seq2: B6Ng01-043O10.g_68_1122

seq1  GAATTCTTTGTCTGGGCTTTTCTGTCTGCAGTCTGTATATAGGGCATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCTGGGCTTTTCTGTCTGCAGTCTGTATATAGGGCATATC  50

seq1  CTCTTCTATCTGTAAAACCTGATTCTCTCTTGAGAGGACATTTATAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATCTGTAAAACCTGATTCTCTCTTGAGAGGACATTTATAAGCC  100

seq1  ACACGCATAATGTACTGCAGTCTCACCTTCTCAAGCTTAACTGAACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATAATGTACTGCAGTCTCACCTTCTCAAGCTTAACTGAACAACT  150

seq1  ATTAAACACTCTTTATCCAAATAAAGTGATATTGATGAGTTCTAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACACTCTTTATCCAAATAAAGTGATATTGATGAGTTCTAAATATT  200

seq1  GGGACCTGATTCTTTGAAGGGCTATTATTTACTTAACTTCCTACAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGATTCTTTGAAGGGCTATTATTTACTTAACTTCCTACAGTTTA  250

seq1  TTCCACTTACTAAATAGCACTGAAGACAAGAAATTCACTGTGTGGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTACTAAATAGCACTGAAGACAAGAAATTCACTGTGTGGTAAAT  300

seq1  ATGTGTTATAGCAAGCTAGATGGTAATAACAGGTGTGGTTTGGGTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTATAGCAAGCTAGATGGTAATAACAGGTGTGGTTTGGGTAGGCT  350

seq1  GTCTAGAGTATGGTAAAAGGAACTGTGATTTCAGAAATTGGAGACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGTATGGTAAAAGGAACTGTGATTTCAGAAATTGGAGACAAAAA  400

seq1  TAGCTTGTATTTAGAATACCTTCTTTGAATGGGCTTCATTAAGCCTAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTATTTAGAATACCTTCTTTGAATGGGCTTCATTAAGCCTAACG  450

seq1  GAGGAATAAAATGGGTGAACTATACTCACACCTGCAGGAAAAGAGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAAAATGGGTGAACTATACTCACACCTGCAGGAAAAGAGAGACT  500

seq1  CTGTAAGGAAAATAGTCCCTATGTTTTTGAAAAGTAAAGACCCCCTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGAAAATAGTCCCTATGTTTTTGAAAAGTAAAGACCCCCTCATG  550

seq1  GTCACCATAGAGAAAGCACTGGAAAAACAGTACACATCTTAGGAGGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATAGAGAAAGCACTGGAAAAACAGTACACATCTTAGGAGGTGAG  600

seq1  AAATGTCCTTGCAGACTAGTAAATAACTTTAATTTTTACAGAGGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCTTGCAGACTAGTAAATAACTTTAATTTTTACAGAGGAAAACA  650

seq1  AGGAAGCATTGGGGTTTGGAGAAGACATAGGAATGGTCTTATGTTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCATTGGGGTTTGGAGAAGACATAGGAATGGTCTTATGTTTTGAA  700

seq1  ATTTCATGTTGACAGCTATGTTAGAAAGGGACTATAGGGAGTAGAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGTTGACAGCTATGTTAGAAAGGGACTATAGGGAGTAGAAGGAG  750

seq1  ATTCCTGGCCCTGTGCAGAATCTTTGCATTCATCTAGATGAATATTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGCCCTGTGCAGAATCTTTGCATTCATCTAGATGAATATTGGTA  800

seq1  GGGGTCAGAGCTATGGATAATAATTCCAGATGTA-TTTGGAAAGTGGCGC  849
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GGGGTCAGAGCTATGGATATTAATTCCAGATGTATTTTGGAAAGTGGCGC  850

seq1  CAAATCTATTTCCTGAGGAGCTAGACATGAAAGGCAATTGTGGTTTTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATTTCCTGAGGAGCTAGACATGAAAGGCAATTGTGGTTTTACC  900

seq1  ATTTTTTTTATTAAATGGGATGAACCTGCTATTAACTGAGGTAAAGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTATTAAATGGGATGAACCTGCTATTAACTGAGGTAAAGAAAG  950

seq1  CATTAGGTGGTAAAAGGTTAGGGGAAAGAAATTATGAGTTAAGTTTTAGA  999
      |||||||||||||||||||||||||||| ||||||||||||||||| |  
seq2  CATTAGGTGGTAAAAGGTTAGGGGAAAG-AATTATGAGTTAAGTTTGA--  997

seq1  CTCTTTTCGATTGATCAGACTCATGTGCCATTGGACAGTTGGCTGTATAA  1049
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -TCTTTTCGATTGATCAGACTCATGTGCCATTGGACAGTTGGCTGTAT-A  1045

seq1  ACTGGGAAAT  1059
      ||||||||||
seq2  ACTGGGAAAT  1055