BAC Information

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BAC

Clone NameB6Ng01-044A15
Chromosome16 (Build37)
Map Location 63,520,358 - 63,680,471
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A15.bB6Ng01-044A15.g
ACCDH869910DH869911
length1,110989
definitionDH869910|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A15, 5' end.DH869911|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,679,368 - 63,680,471)(63,520,358 - 63,521,326)
sequence
gaattctgagggctatgaagatgaatagacaaagatcaaatgttgtgtaa
tatcaggtaggctgatgaaagacagaagactttcgatttaacaactcaaa
gactactcttgcatttcttcagaggggttcatttgagttagcaacaactg
gagaatgaatagaaataataaaacaagaataaagaggaagacttttcata
ttgatttcggggagttgagaattaaaactattaatcagtggcttagtatg
gatagagcaggaagaaaagtttcctatatactattggagtgaggctaaca
aatacaagagacatcatcatggcagtgtctaaaatcataggtcagatttg
acactgaccaagagtgtgtcaaggaggactggagttccaagaaaaaaatt
aaccttggcccctgcaagcatgggattttctgtcctacatcatggttaat
agcagccttcttccctgcacatgctcgcacacacacacacacacacacac
agatgcacacacaggcacacataaaaatgcacactcatacacaagtgaac
aacacagacaaaatgcacacatacaaatgcacacacacacacacatgcac
atagatatttttaggctctctatttcacatggacactacagatgactcca
acttgattcatctgccttaacattgtttttgtcacagtcaatttttcata
gtcctcaaataaaaagatttgagtttctctgccaagcctatgttccctaa
gtcaataataatataagtcaaatttttaagtttttgagaaaaacatggtt
ttagtaaacaacgcttagaaatttaaaggagttcattggacctgtttctc
ctttcttttcttcacacacaaaagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagattctgactatctcagaa
tgcattgctcttcttcctgtgggtataaccacatttgcagaatacattat
ttcctctcttgtagcacaacttacaaattgcctaatgcttaaagcttcag
ccagaaaattgatggtatcaaggttcacagcctgaaaccttacctctacg
ttgaaatctc
gaattctctcaaactttggaacagtccccattgtgtgattgacacaccag
gaggtccaggtggcagcaatagctcaaggtctatttggtaagaataagag
ttctgtgactggcagattgctcagggatattactaatacttctctgcctg
tcttccggaggtgaaatactgaggtgagtctcaggaaaaacaaccccaaa
ataattgttttctacttgttttttttcccatagcttactatgctatcata
ccatttccaattacttccaatatttaatatcaaattgaattttcaagaag
acaatgaaccaacactaaagtaatacaaagtagaaaaataagaatctcat
gcaactgcaaggagtgtctatttctatactcattaaaaagattggaaatt
tttaaattatttaagaaactatatggaagacatggtttatgtgtcacatg
aaccctgagattatttctcttttttattagatattttcttcctttacatt
tcaaatgctattccaaggtcccctatacccaacccccgtcctgatcccaa
acaccccccactcctgattcctggccctggcattcccctatactggggca
tatgatcttcgcaaggccaaggggctctcctcccattgatggccaactaa
gccatcctctgctacatgtgcaactagagacacagctctggaggggtact
ggttagttcatattgttgttcctcctataggttgcagacccctttatctc
cttgggtactttatctagctccttcattaggggccctgtgttccatccaa
tagacgactgtgagcatccacttctgtatttgccagcactggcatagcct
cacaagagatagctatatcaggtcctgtcagcaaaatctttctggcatat
gcaatagtgtctgggtttggtggttgtacatgggatggatccccaggtgg
ggcagtctctggacggtctcttcgtctcagctcttgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63679368_63680471
seq2: B6Ng01-044A15.b_44_1153 (reverse)

seq1  GAGATTTC-ACGTAGA-GTAAGGTATCAGCTTGTGA--CTTGATACACTC  46
      |||||||| ||||||| ||||||| ||||  |||||  ||||||||  ||
seq2  GAGATTTCAACGTAGAGGTAAGGTTTCAGGCTGTGAACCTTGATACCATC  50

seq1  AATTTTCT-GCTG-AGCTTTAAGCTTTATGCAATTTGTAAGTTGTGCTAC  94
      |||||||| |||| |||||||||| ||| |||||||||||||||||||||
seq2  AATTTTCTGGCTGAAGCTTTAAGCATTAGGCAATTTGTAAGTTGTGCTAC  100

seq1  AAGAGAGG-AATAATGTATACTGCAAATTGTGTTAAACCCACAGG-AGAA  142
      |||||||| |||||||||| ||||||||   |||| ||||||||| ||||
seq2  AAGAGAGGAAATAATGTATTCTGCAAATGTGGTTATACCCACAGGAAGAA  150

seq1  GAGCAATGCATTCTGAGATAGTCAGAATCTCTCTCTCCTCTCTCTCTCTC  192
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCAATGCATTCTGAGATAGTCAGAATCTCTCTCT-CTCTCTCTCTCTC  199

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTTGTGTG  242
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTG-TGTGTG  248

seq1  AAGAAAAGAAAGGAGAAACAGGTCCAATGAACTCCTTTAAATTTCTAAGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAGGAGAAACAGGTCCAATGAACTCCTTTAAATTTCTAAGC  298

seq1  GTTGTTTACTAAAACCATGTTTTTCTCAAAAACTTAAAAATTTGACTTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTACTAAAACCATGTTTTTCTCAAAAACTTAAAAATTTGACTTAT  348

seq1  ATTATTATTGACTTAGGGAACATAGGCTTGGCAGAGAAACTCAAATCTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTGACTTAGGGAACATAGGCTTGGCAGAGAAACTCAAATCTTT  398

seq1  TTATTTGAGGACTATGAAAAATTGACTGTGACAAAAACAATGTTAAGGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGGACTATGAAAAATTGACTGTGACAAAAACAATGTTAAGGCA  448

seq1  GATGAATCAAGTTGGAGTCATCTGTAGTGTCCATGTGAAATAGAGAGCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCAAGTTGGAGTCATCTGTAGTGTCCATGTGAAATAGAGAGCCT  498

seq1  AAAAATATCTATGTGCATGTGTGTGTGTGTGTGCATTTGTATGTGTGCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCTATGTGCATGTGTGTGTGTGTGTGCATTTGTATGTGTGCAT  548

seq1  TTTGTCTGTGTTGTTCACTTGTGTATGAGTGTGCATTTTTATGTGTGCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTGTTGTTCACTTGTGTATGAGTGTGCATTTTTATGTGTGCCT  598

seq1  GTGTGTGCATCTGTGTGTGTGTGTGTGTGTGTGTGCGAGCATGTGCAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATCTGTGTGTGTGTGTGTGTGTGTGTGCGAGCATGTGCAGGG  648

seq1  AAGAAGGCTGCTATTAACCATGATGTAGGACAGAAAATCCCATGCTTGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCTGCTATTAACCATGATGTAGGACAGAAAATCCCATGCTTGCA  698

seq1  GGGGCCAAGGTTAATTTTTTTCTTGGAACTCCAGTCCTCCTTGACACACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAAGGTTAATTTTTTTCTTGGAACTCCAGTCCTCCTTGACACACT  748

seq1  CTTGGTCAGTGTCAAATCTGACCTATGATTTTAGACACTGCCATGATGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCAGTGTCAAATCTGACCTATGATTTTAGACACTGCCATGATGAT  798

seq1  GTCTCTTGTATTTGTTAGCCTCACTCCAATAGTATATAGGAAACTTTTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTATTTGTTAGCCTCACTCCAATAGTATATAGGAAACTTTTCT  848

seq1  TCCTGCTCTATCCATACTAAGCCACTGATTAATAGTTTTAATTCTCAACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTATCCATACTAAGCCACTGATTAATAGTTTTAATTCTCAACT  898

seq1  CCCCGAAATCAATATGAAAAGTCTTCCTCTTTATTCTTGTTTTATTATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAATCAATATGAAAAGTCTTCCTCTTTATTCTTGTTTTATTATTT  948

seq1  CTATTCATTCTCCAGTTGTTGCTAACTCAAATGAACCCCTCTGAAGAAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTCTCCAGTTGTTGCTAACTCAAATGAACCCCTCTGAAGAAAT  998

seq1  GCAAGAGTAGTCTTTGAGTTGTTAAATCGAAAGTCTTCTGTCTTTCATCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTAGTCTTTGAGTTGTTAAATCGAAAGTCTTCTGTCTTTCATCA  1048

seq1  GCCTACCTGATATTACACAACATTTGATCTTTGTCTATTCATCTTCATAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTGATATTACACAACATTTGATCTTTGTCTATTCATCTTCATAG  1098

seq1  CCCTCAGAATTC  1104
      ||||||||||||
seq2  CCCTCAGAATTC  1110

seq1: chr16_63520358_63521326
seq2: B6Ng01-044A15.g_64_1031

seq1  GAATTCTCTCAAACTTTGGAACAGTCCCCATTGTGTGATTGACACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAACTTTGGAACAGTCCCCATTGTGTGATTGACACACCAG  50

seq1  GAGGTCCAGGTGGCAGCAATAGCTCAAGGTCTATTTGGTAAGAATAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGGTGGCAGCAATAGCTCAAGGTCTATTTGGTAAGAATAAGAG  100

seq1  TTCTGTGACTGGCAGATTGCTCAGGGATATTACTAATACTTCTCTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACTGGCAGATTGCTCAGGGATATTACTAATACTTCTCTGCCTG  150

seq1  TCTTCCGGAGGTGAAATACTGAGGTGAGTCTCAGGAAAAACAACCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGGAGGTGAAATACTGAGGTGAGTCTCAGGAAAAACAACCCCAAA  200

seq1  ATAATTGTTTTCTACTTGTTTTTTTTCCCATAGCTTACTATGCTATCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTTTTCTACTTGTTTTTTTTCCCATAGCTTACTATGCTATCATA  250

seq1  CCATTTCCAATTACTTCCAATATTTAATATCAAATTGAATTTTCAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCAATTACTTCCAATATTTAATATCAAATTGAATTTTCAAGAAG  300

seq1  ACAATGAACCAACACTAAAGTAATACAAAGTAGAAAAATAAGAATCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAACCAACACTAAAGTAATACAAAGTAGAAAAATAAGAATCTCAT  350

seq1  GCAACTGCAAGGAGTGTCTATTTCTATACTCATTAAAAAGATTGGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCAAGGAGTGTCTATTTCTATACTCATTAAAAAGATTGGAAATT  400

seq1  TTTAAATTATTTAAGAAACTATATGGAAGACATGGTTTATGTGTCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATTTAAGAAACTATATGGAAGACATGGTTTATGTGTCACATG  450

seq1  AACCCTGAGATTATTTCTCTTTTTTATTAGATATTTTCTTCCTTTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGATTATTTCTCTTTTTTATTAGATATTTTCTTCCTTTACATT  500

seq1  TCAAATGCTATTCCAAGGTCCCCTATACCCAACCCCCGTCCTGATCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTATTCCAAGGTCCCCTATACCCAACCCCCGTCCTGATCCCAA  550

seq1  ACACCCCCCACTCCTGATTCCTGGCCCTGGCATTCCCCTATACTGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCCACTCCTGATTCCTGGCCCTGGCATTCCCCTATACTGGGGCA  600

seq1  TATGATCTTCGCAAGGCCAAGGGGCTCTCCTCCCATTGATGGCCAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTCGCAAGGCCAAGGGGCTCTCCTCCCATTGATGGCCAACTAA  650

seq1  GCCATCCTCTGCTACATGTGCAACTAGAGACACAGCTCTGGAGGGGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCTGCTACATGTGCAACTAGAGACACAGCTCTGGAGGGGTACT  700

seq1  GGTTAGTTCATATTGTTGTTCCTCCTATAGGTTGCAGACCCCTTTATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTCATATTGTTGTTCCTCCTATAGGTTGCAGACCCCTTTATCTC  750

seq1  CTTGGGTACTTTATCTAGCTCCTTCATTAGGGGCCCTGTGTTCCATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTACTTTATCTAGCTCCTTCATTAGGGGCCCTGTGTTCCATCCAA  800

seq1  TAGACGACTGTGAGCATCCACTTCTGTATTTGCCAGCACTGGCATAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGACTGTGAGCATCCACTTCTGTATTTGCCAGCACTGGCATAGCCT  850

seq1  CACAAGAGATAGCTATATCAGGGTCCTGTCAGCAAAATCTTTCTGGCATA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACAAGAGATAGCTATATCA-GGTCCTGTCAGCAAAATCTTTCTGGCATA  899

seq1  TGCAATAGTGTCTGGGTTTGGTGGTTGTACATGGGATGGATCCCCAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTGTCTGGGTTTGGTGGTTGTACATGGGATGGATCCCCAGGTG  949

seq1  GGGCAGTCTCTGGACGGTC  969
      |||||||||||||||||||
seq2  GGGCAGTCTCTGGACGGTC  968