BAC Information

Click to search

BAC

Clone NameB6Ng01-044J02
Chromosome16 (Build37)
Map Location 12,546,437 - 12,547,498
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J02.bB6Ng01-044J02.g
ACCDH870284DH870285
length5831,064
definitionDH870284|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J02, 5' end.DH870285|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cacagatgggatgttatttttctcttctgattttcctatatgactcaatt
tgggcaaccaaatgaaacagattgatgatgttctctctctctctctctct
ctctctctctctctctctctctctctccctctccctctccctctctctct
ctctctctctctctctctctctctcttactctttgtgaacaagcccggta
ttactttgaaaatatctgttgattttggtgggtttgtgtttgagactgcg
gggagtccagtggggccaatctcaggtgtaggaatggggcatttgctttg
catgccttgtcttgtacgtgctttctgtagactttaggtggcttcttttt
tgtttggtttgttgattaaaagatatacagagaaagaagaaatgaaagtt
ttgtgtgctttgttgggcccgacagagaaacttggccagtaaagagtgtc
tcagtttttaggagcatatctaattcgacttgcaagggattctggctatc
acgtgaggaaagcaaagacttctaacactatggttgaatgctgatctatt
taataaatatgagcactttttgatctgcaacgc

gaattccccagggctctctcacttgtgttcattactcaaatagttatctc
cagacactgcttaccaacactgtggtgtgtaatcctgcctctctggaggc
ctgtgctgtttgtgctgcttctggcgctgcatgggttgtatctcagtata
ctcatgtgaaatgtgtcattttcatttgtgaaggccagacatctcttatg
gattttgtgttacagtgtgactctgatttcatgaagaaggtgaacaatta
tcccacctattctatgtttttcatctggtccccaggtcatttcaccagag
ctcctaaagtgtctgttctttcttatggtctaaatcatgggctcctggtt
gagtactggaagactgccatattgtgaggaaatccagtggttatatggaa
gaaaagcagtggtagtcagccccaatgattctaggcatgtcagtcgaagc
accaggggagcaacccttgtatatagtagttacagcagatgccacactga
aaaatattaaaagttttgatttacaacctcatctgaaccatttcagccat
ctccaatcattcagcaagggtaggagttagctgaacctacagcagacagt
caggttggggccatgacctggaaagctgttttttttctgacagcttggta
gtcactgacaaccacttaccaatcacaaatgaagacattctgattcttag
taatactacagaagtggacacccatagcacttcccctgcagctcccatcc
cctctgcaaagtccttttccaaaccccaagcaagaggctgacaatggaag
cccatccttgggatcattcctggcagacagaagctctggtgatcatcttt
cccagccacaggacctttttcctgacattgagtgccccttcccatgatga
tgtcatgagtgctcttctcaattcagttctttcattttgcattcactgca
agtggagtgagagagaacgagtgtagattagaagagagaaatgcatgtag
gtggagttgggaaaagaacacttgtagatagagttagagagaatgcgtgt
agatggaggtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_12546437_12547498
seq2: B6Ng01-044J02.g_67_1130 (reverse)

seq1  TCTCA-CTCCATCTACACGCATTCTCTCTTACTCTATCTACATGTGTTCT  49
      ||||| ||||||||||||||||||||||| |||||||||||| |||||||
seq2  TCTCACCTCCATCTACACGCATTCTCTCTAACTCTATCTACAAGTGTTCT  50

seq1  CT--CCCACTCCACCTACATGCATTTCTCTCCTTCT-ATCTACACTCGTT  96
       |  || ||||||||||||||||||||||| ||||| |||||||||||||
seq2  TTTCCCAACTCCACCTACATGCATTTCTCT-CTTCTAATCTACACTCGTT  99

seq1  CTCTCTCACTCCACTTTGCAGTGAATGCAAAATGAAAGAACTGAATTGAG  146
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACTCCAC-TTGCAGTGAATGCAAAATGAAAGAACTGAATTGAG  148

seq1  AAGAGCACTCATGACATCATCATGGGAAGGGGCACTCAATGTCAGGAAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTCATGACATCATCATGGGAAGGGGCACTCAATGTCAGGAAAA  198

seq1  AGGTCCTGTGGCTGGGAAAGATGATCACCAGAGCTTCTGTCTGCCAGGAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGTGGCTGGGAAAGATGATCACCAGAGCTTCTGTCTGCCAGGAA  248

seq1  TGATCCCAAGGATGGGCTTCCATTGTCAGCCTCTTGCTTGGGGTTTGGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAAGGATGGGCTTCCATTGTCAGCCTCTTGCTTGGGGTTTGGAA  298

seq1  AAGGACTTTGCAGAGGGGATGGGAGCTGCAGGGGAAGTGCTATGGGTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTTGCAGAGGGGATGGGAGCTGCAGGGGAAGTGCTATGGGTGTC  348

seq1  CACTTCTGTAGTATTACTAAGAATCAGAATGTCTTCATTTGTGATTGGTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTAGTATTACTAAGAATCAGAATGTCTTCATTTGTGATTGGTA  398

seq1  AGTGGTTGTCAGTGACTACCAAGCTGTCAGAAAAAAAACAGCTTTCCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGTCAGTGACTACCAAGCTGTCAGAAAAAAAACAGCTTTCCAGG  448

seq1  TCATGGCCCCAACCTGACTGTCTGCTGTAGGTTCAGCTAACTCCTACCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCCAACCTGACTGTCTGCTGTAGGTTCAGCTAACTCCTACCCT  498

seq1  TGCTGAATGATTGGAGATGGCTGAAATGGTTCAGATGAGGTTGTAAATCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGATTGGAGATGGCTGAAATGGTTCAGATGAGGTTGTAAATCA  548

seq1  AAACTTTTAATATTTTTCAGTGTGGCATCTGCTGTAACTACTATATACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTAATATTTTTCAGTGTGGCATCTGCTGTAACTACTATATACAA  598

seq1  GGGTTGCTCCCCTGGTGCTTCGACTGACATGCCTAGAATCATTGGGGCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTCCCCTGGTGCTTCGACTGACATGCCTAGAATCATTGGGGCTG  648

seq1  ACTACCACTGCTTTTCTTCCATATAACCACTGGATTTCCTCACAATATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACTGCTTTTCTTCCATATAACCACTGGATTTCCTCACAATATGG  698

seq1  CAGTCTTCCAGTACTCAACCAGGAGCCCATGATTTAGACCATAAGAAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCAGTACTCAACCAGGAGCCCATGATTTAGACCATAAGAAAGA  748

seq1  ACAGACACTTTAGGAGCTCTGGTGAAATGACCTGGGGACCAGATGAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTTTAGGAGCTCTGGTGAAATGACCTGGGGACCAGATGAAAAA  798

seq1  CATAGAATAGGTGGGATAATTGTTCACCTTCTTCATGAAATCAGAGTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATAGGTGGGATAATTGTTCACCTTCTTCATGAAATCAGAGTCAC  848

seq1  ACTGTAACACAAAATCCATAAGAGATGTCTGGCCTTCACAAATGAAAATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACACAAAATCCATAAGAGATGTCTGGCCTTCACAAATGAAAATG  898

seq1  ACACATTTCACATGAGTATACTGAGATACAACCCATGCAGCGCCAGAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTCACATGAGTATACTGAGATACAACCCATGCAGCGCCAGAAGC  948

seq1  AGCACAAACAGCACAGGCCTCCAGAGAGGCAGGATTACACACCACAGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAACAGCACAGGCCTCCAGAGAGGCAGGATTACACACCACAGTGT  998

seq1  TGGTAAGCAGTGTCTGGAGATAACTATTTGAGTAATGAACACAAGTGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCAGTGTCTGGAGATAACTATTTGAGTAATGAACACAAGTGAGA  1048

seq1  GAGCCCTGGGGAATTC  1062
      ||||||||||||||||
seq2  GAGCCCTGGGGAATTC  1064


| Home | SequenceCutter | Blast | Download |