BAC Information

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BAC

Clone NameB6Ng01-047B09
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,978 - 104,054,84070,477,174 - 70,478,306
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047B09.bB6Ng01-047B09.g
ACCDH872044DH872045
length5401,095
definitionDH872044|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B09, 5' end.DH872045|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,978 - 104,054,840)(70,477,174 - 70,478,306)
sequence
gaattctttgtttatctctgagagagctaaaaccacccagtggaaaaaaa
gacagcattttcaacaaatggtgctggcactactggtggttatcatgtag
aagaatgcaaattgatccattcctatctccttgtactaaggtcaaatcta
agtggatcaaggaactccacataaaaccagagacactgaaacttatagag
gagaaagtggggaaaagcctcgaagatattggcacaggggaaacattcct
gaatagaacagcaatggcttgtgctgtaagattgagaattgacaaatggg
acctcataaaatttcaaagcttctgcaagtcaaaagataccgtcaataag
acaaaaaggtcaccaacagattgggaaaggatctttacctatcctaaatc
agataggggactaatatccaatatatataaagaactcaagaaggtggact
ccagaaaatcaaataaccccaatgttagcctttataagagttgtcttcta
ctatgttcacagcagccttatttataatagccagaagctg
gaattcaattatataagcctatagaggccattcttactcaaatcaaaacg
tggtcccaaaagttaagatggaacattaatttagaattacacattgtcca
tctgtgaattccatttggatttacacacatggagcccatatgtgtataca
ctttcacaaaataaatgaacatggctgggataataaaatttgaaatttat
ctttatacacatttaatctaagcttcttgaatgtccaggttgtccttcat
gcacttatcattgctcattcttcggggtttacctttccaaatatttttca
aatacccagtaagtttttaaagttcaaggtaacttatttcaagtaggtat
tgtcatctgcattcacctcttcccgaaggttagatttctccttttggagt
tggttgtgatagcttaatctctgcttctgtctgattatgctttaatatga
agaaggcttaaaaatacataaatttgtgctgtgttaaagacttgtataca
caattacagctttgtcattaagctaaatgaggtattaaagtcttaaaact
acagttgtaataagatggagaactcaaccatggccgagcatctgaaggaa
accctaattgacgttgccctctcttcagttgtccgaaatagatttgcttc
atgcggtgtttttaattgagtaatgcagttctttttccttctgctttgat
ggttgtgtggctctttgttgtatactttatgaaacatgtgaatattttta
taattacgttttcatttttacttttatcaaagggcatctagtaaatgtaa
tattatttatcgtgtgattaagtcttttttttttttatcagttatttctt
ctttggaattacaactgcttgaagtttcagccaggattttagaaagatca
tcagtgaagtcatctctcaatctatacctgagatagaaaatatatctctt
ctattcttatatatatcagggaaatcttgataaatgagttatagtgcatt
ttctttttcagctatatcatctctaggagctttctgttgtcagggtacac
actgaacaaaactgccagctctggctgtaatctttttttttaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053978_104054840
seq2: B6Ng01-047B09.b_65_581 (reverse)

seq1  CAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  300
                                              |||     ||
seq2  ----------------------------------------CAG----CTT  6

seq1  TTGATTTGCATTTCCCTGATGATTAAGGATG--TTGAACATTTTTTCAGG  348
       ||    ||  ||     || | ||||| ||   |||||||  |      
seq2  CTG----GCTATT-----ATAAATAAGGCTGCTGTGAACATAGT------  41

seq1  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTC  398
                                ||  || || ||||   | |   |
seq2  --------------------------AGAAGACAACTCTT--ATAAAGGC  63

seq1  TGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCT  448
      | |    |||       | |||||||||||||||||| ||||||||||||
seq2  TAA----CAT-------TGGGGTTATTTGATTTTCTGGAGTCCACCTTCT  102

seq1  TGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAG  498
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAG  152

seq1  GTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGT  548
      |||||||||||||| |||||||||||||  ||||||||||||||||||||
seq2  GTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGACGGT  202

seq1  GTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAA  598
       ||||||| ||||||||||||||| |||||||||||||||||||| ||||
seq2  ATCTTTTGACTTGCAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTCAA  252

seq1  CTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  648
       |||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATGTTTCC  302

seq1  CCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTT  698
      ||||| || |||||||||||||||||||| ||||| ||||||||||||||
seq2  CCTGTGCCAATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTT  352

seq1  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCT  748
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCT  402

seq1  TAGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGATAAC  798
      |||||||||||||||| ||| ||||||||  || ||||||||||||||||
seq2  TAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGATAAC  452

seq1  AGCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCCACT  848
        ||||| |||||||||  |||||||||||||||||||||||||||||||
seq2  CACCAGTAGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACT  502

seq1  GGATAGTTTTAGCTC  863
      || | ||||||||||
seq2  GGGTGGTTTTAGCTC  517

seq1: chr16_70477174_70478306
seq2: B6Ng01-047B09.g_67_1161

seq1  GAATTCAATTATATAAGCCTATAGAGGCCATTCTTACTCAAATCAAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATATAAGCCTATAGAGGCCATTCTTACTCAAATCAAAACG  50

seq1  TGGTCCCAAAAGTTAAGATGGAACATTAATTTAGAATTACACATTGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAAAAGTTAAGATGGAACATTAATTTAGAATTACACATTGTCCA  100

seq1  TCTGTGAATTCCATTTGGATTTACACACATGGAGCCCATATGTGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATTCCATTTGGATTTACACACATGGAGCCCATATGTGTATACA  150

seq1  CTTTCACAAAATAAATGAACATGGCTGGGATAATAAAATTTGAAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAAAATAAATGAACATGGCTGGGATAATAAAATTTGAAATTTAT  200

seq1  CTTTATACACATTTAATCTAAGCTTCTTGAATGTCCAGGTTGTCCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACACATTTAATCTAAGCTTCTTGAATGTCCAGGTTGTCCTTCAT  250

seq1  GCACTTATCATTGCTCATTCTTCGGGGTTTACCTTTCCAAATATTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATCATTGCTCATTCTTCGGGGTTTACCTTTCCAAATATTTTTCA  300

seq1  AATACCCAGTAAGTTTTTAAAGTTCAAGGTAACTTATTTCAAGTAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCAGTAAGTTTTTAAAGTTCAAGGTAACTTATTTCAAGTAGGTAT  350

seq1  TGTCATCTGCATTCACCTCTTCCCGAAGGTTAGATTTCTCCTTTTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGCATTCACCTCTTCCCGAAGGTTAGATTTCTCCTTTTGGAGT  400

seq1  TGGTTGTGATAGCTTAATCTCTGCTTCTGTCTGATTATGCTTTAATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGATAGCTTAATCTCTGCTTCTGTCTGATTATGCTTTAATATGA  450

seq1  AGAAGGCTTAAAAATACATAAATTTGTGCTGTGTTAAAGACTTGTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTAAAAATACATAAATTTGTGCTGTGTTAAAGACTTGTATACA  500

seq1  CAATTACAGCTTTGTCATTAAGCTAAATGAGGTATTAAAGTCTTAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAGCTTTGTCATTAAGCTAAATGAGGTATTAAAGTCTTAAAACT  550

seq1  ACAGTTGTAATAAGATGGAGAACTCAACCATGGCCGAGCATCTGAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTAATAAGATGGAGAACTCAACCATGGCCGAGCATCTGAAGGAA  600

seq1  ACCCTAATTGACGTTGCCCTCTCTTCAGTTGTCCGAAATAGATTTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAATTGACGTTGCCCTCTCTTCAGTTGTCCGAAATAGATTTGCTTC  650

seq1  ATGCGGTGTTTTTAATTGAGTAATGCAGTTCTTTTTCCTTCTGCTTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGTGTTTTTAATTGAGTAATGCAGTTCTTTTTCCTTCTGCTTTGAT  700

seq1  GGTTGTGTGGCTCTTTGTTGTATACTTTATGAAACATGTGAATATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTGGCTCTTTGTTGTATACTTTATGAAACATGTGAATATTTTTA  750

seq1  TAATTACGTTTTCATTTTTACTTTTATCAAAGGGCATCTAGTAAATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACGTTTTCATTTTTACTTTTATCAAAGGGCATCTAGTAAATGTAA  800

seq1  TATTATTTATCGTGTGATTAAGTCTTTTTTTTTTTTATCAGTTATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATCGTGTGATTAAGTCTTTTTTTTTTTTATCAGTTATTTCTT  850

seq1  CTTTGGAATTACAACTGCTTGAAGTTTCAGCCAAGGATTTTAGAAAGATC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTGGAATTACAACTGCTTGAAGTTTCAGCC-AGGATTTTAGAAAGATC  899

seq1  ATCAGTGAAGCCATCTCTCCAATCTATACCTGAAAGAATAGAAAAAAATA  950
      |||||||||| ||||||| ||||||||||||||    ||||   ||||||
seq2  ATCAGTGAAGTCATCTCT-CAATCTATACCTGA---GATAG---AAAATA  942

seq1  AATAACCTCTTCTAATTCTTATAATATAATCCAGGGGGAAAATCTTGATT  1000
       ||   ||||||| |||||||| |||||   |||||   |||||||||| 
seq2  TAT---CTCTTCT-ATTCTTAT-ATATA--TCAGGG---AAATCTTGAT-  981

seq1  AAAATTGAGTTATAAGTGGCATTTTCTTTTTCAGCTATATCATCTCTAGG  1050
        || |||||||| ||| ||||||||||||||||||||||||||||||||
seq2  --AAATGAGTTAT-AGT-GCATTTTCTTTTTCAGCTATATCATCTCTAGG  1027

seq1  AGCCTTTCTGGTTGTCAAGGGTACAACACTGAACAAGACTGCACAGGCTC  1100
      || |||||| |||||| ||||||| ||||||||||| ||||| || ||||
seq2  AG-CTTTCT-GTTGTC-AGGGTAC-ACACTGAACAAAACTGC-CA-GCTC  1071

seq1  CTGCCCTGTAAATCTTTTTTTTTTTTTTTAATA  1133
        |  ||||||       | |||||||||||||
seq2  TGG--CTGTAA-------TCTTTTTTTTTAATA  1095