BAC Information

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BAC

Clone NameB6Ng01-047H21
Chromosome16 (Build37)
Map Location 5,991,364 - 6,139,241
singlet/doubletdoublet
Overlap geneA2bp1, LOC100042445
Upstream geneSept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H21.bB6Ng01-047H21.g
ACCDH872336DH872337
length1,079924
definitionDH872336|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H21, 5' end.DH872337|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,138,161 - 6,139,241)(5,991,364 - 5,992,302)
sequence
gaattcaaagcagttagaaacaaggagaaatgaatgtggtcctgctttgc
tgctctcagttaactttctcctggcttgcatagttcaggaactgctgcta
aggaagtggtgccttacatagtgtactgagttctcctctatcgattacca
aggcaaccaccctcaggccaacctgatggaggctctcttctcaggtgaca
gtaggttgtggcaatttaacaattaattataaaatgtacacttattgtat
ctgtgtgcttgtatgtgtatctatttacacttgcataatgtgtgtgtaga
agtcaaataatcacttgtgttaataggttttcttcttctaatctgtgggt
tctaggatttgaagtcaaatcatcaggcttgagacaggaagtgcctgttc
atgctgagccatctcactgacccacaagttggcaatggaagtctactaac
aacctgtctacattttgataactgatacctccaatgtggctattatatgt
tacatgtaataaatatattgtttataatccttgtaacaaccttctaagcc
aagcagtaatatcttctaatattaaggacgaaaaggcatctctaaggctt
gaagaagatcattcaaggcaagcagctgcaagagccagcattgggattta
aaccaaggtttcaatgcaagaacatatcaacatctgagtcaagatttctg
aacttttcccaagctattgacagtgcatttgtctctggctgagaacatat
ctttaatgatacatgggagggcacaagggagccttgacatccaaagctgg
ttttgcagaagaaacagaggcagaaggtggggattaaaaggtggatggcc
atggacttttgatgtgggttggaaactgcccacagtgactaaagctcttt
tgaattatttaaacttttgctttgccgacccatttcagccttcttctgaa
aacgagacctcacagggtgtttgtatcagtgcaagatgatacgtattaat
aatttgatgcagcatgctcacttgtctgatgtgacttataagaaatatct
ggcatgaataataccggtgctgatggtgt

gaattcattcttctcttctaacccctcacaggatctaaccaaatcattgt
ctttcctccaaacactctggtctttgctccttcttcctacttgcctttag
tgcattttatctacccaacattttctctttttgtttatgggttgtgtcag
tcattcaggaaccagcacagtttttattgcttcctcagaaatgccctttc
ctttgtctaagtagaagagattcttcctcctttctggttctttaagtctc
tttcagttctggatcatggctgcaatattttatggcatgatcatgatcta
cacttaatgaacataggatgagcatctctaatccaaaagtcccaaagctc
agtcattactagagtgcttgcccggggacatgagtagcagagactggtcc
ccagcattggaaagacagagaataagagagagaaagagatgggtggcaga
gaaggaaaaggacctccttctgaacatcaaccctcttgtgcccagtgtga
agctgccctggaaatttccatgtgatagaaactttatttcatgcacaaaa
tttggatgagtgttttatgaaacttcctttagaccacaatgtgaaagaaa
tgcataaaacatgaatgaattttatatttagacttgggttctgtccctat
gttatctcataatatgcaaattttcctaactcttacacacctaaaaccca
acctttggactcatgcatttcagatgagtgatcctcaacctacagtctgg
taagtaggtgaattagtaaagcaaacaccacggagctagggagacagatg
aaggcagaggctaagctgccactagttcagcctctgagctacacttggtc
tagctgtccttctaccatttattattacacacttttcagcatacgtgaga
gagagctgtcgtcagcacactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6138161_6139241
seq2: B6Ng01-047H21.b_43_1121 (reverse)

seq1  ACACAATCAGCACCACGTTATTTATTTCATGCCAAGATAATATCTTTATA  50
      |||| ||||||||  || ||||   |||||||| |||| || ||||   |
seq2  ACACCATCAGCAC--CGGTATT--ATTCATGCC-AGAT-ATTTCTTATAA  44

seq1  GTCAACATCAAGACAGGTGAGCATGCTGCATCAAATTATTAATTACGTAT  100
      ||| ||||| ||||| |||||||||||||||||||||||||| |||||||
seq2  GTC-ACATC-AGACAAGTGAGCATGCTGCATCAAATTATTAA-TACGTAT  91

seq1  CATCTTGGCACTGATAACAAACACCCCTGTGAGGTCTCGTTTTCCAGGAG  150
      |||||| |||||||| ||||||| ||||||||||||||||||| ||| ||
seq2  CATCTT-GCACTGAT-ACAAACA-CCCTGTGAGGTCTCGTTTT-CAGAAG  137

seq1  AAGGCTGAAATGGGTC-GCAAAGCAAAAGTCTAAATAATTCAAAAGAGCT  199
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AAGGCTGAAATGGGTCGGCAAAGCAAAAGTTTAAATAATTCAAAAGAGCT  187

seq1  TTAGTCACTGTGGGCAGTTTCC-ACCCACATC-AAAGT-CATGGCCATCC  246
      |||||||||||||||||||||| ||||||||| ||||| |||||||||||
seq2  TTAGTCACTGTGGGCAGTTTCCAACCCACATCAAAAGTCCATGGCCATCC  237

seq1  A-CTTTTAATCCCCACC-TCTGCTTCTGTTTCTTCTGCAAA--CAGCTTT  292
      | ||||||||||||||| ||||| |||||||||||||||||  |||||||
seq2  ACCTTTTAATCCCCACCTTCTGCCTCTGTTTCTTCTGCAAAACCAGCTTT  287

seq1  GGATGTCAGGGCT-CCTTGTG-CCTTCCATGTATCATTAAAGATATGTTC  340
      |||||||| |||| ||||||| ||| ||||||||||||||||||||||||
seq2  GGATGTCAAGGCTCCCTTGTGCCCTCCCATGTATCATTAAAGATATGTTC  337

seq1  TCAGCCAGGGACAAATGCACTGTCAATAGCTTGGGAAAAGTTCAGAGATC  390
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGCCAGAGACAAATGCACTGTCAATAGCTTGGGAAAAGTTCAGAAATC  387

seq1  TTGACTCAGATGTTGATATGTTCTTGCATTGAAACCTTGGTTTAAAT-CC  439
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGACTCAGATGTTGATATGTTCTTGCATTGAAACCTTGGTTTAAATCCC  437

seq1  AATGCTGGCTCTTGCAGCTGCTTGCCTTGAATGATCTTCTTCAAGCCTTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGCTCTTGCAGCTGCTTGCCTTGAATGATCTTCTTCAAGCCTTA  487

seq1  GAGATGCCTTTTCGTCCTTAATATTAGAAGATATTACTGCTTGGCTTAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCTTTTCGTCCTTAATATTAGAAGATATTACTGCTTGGCTTAGA  537

seq1  AGGTTGTTACAAGGATTATAAACAATATATTTATTACATGTAACATATAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTACAAGGATTATAAACAATATATTTATTACATGTAACATATAA  587

seq1  TAGCCACATTGGAGGTATCAGTTATCAAAATGTAGACAGGTTGTTAGTAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATTGGAGGTATCAGTTATCAAAATGTAGACAGGTTGTTAGTAG  637

seq1  ACTTCCATTGCCAACTTGTGGGTCAGTGAGATGGCTCAGCATGAACAGGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTGCCAACTTGTGGGTCAGTGAGATGGCTCAGCATGAACAGGC  687

seq1  ACTTCCTGTCTCAAGCCTGATGATTTGACTTCAAATCCTAGAACCCACAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTCTCAAGCCTGATGATTTGACTTCAAATCCTAGAACCCACAG  737

seq1  ATTAGAAGAAGAAAACCTATTAACACAAGTGATTATTTGACTTCTACACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGAAGAAAACCTATTAACACAAGTGATTATTTGACTTCTACACA  787

seq1  CACATTATGCAAGTGTAAATAGATACACATACAAGCACACAGATACAATA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATGCAAGTGTAAATAGATACACATACAAGCACACAGATACAATA  837

seq1  AGTGTACATTTTATAATTAATTGTTAAATTGCCACAACCTACTGTCACCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACATTTTATAATTAATTGTTAAATTGCCACAACCTACTGTCACCT  887

seq1  GAGAAGAGAGCCTCCATCAGGTTGGCCTGAGGGTGGTTGCCTTGGTAATC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAGCCTCCATCAGGTTGGCCTGAGGGTGGTTGCCTTGGTAATC  937

seq1  GATAGAGGAGAACTCAGTACACTATGTAAGGCACCACTTCCTTAGCAGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGAGAACTCAGTACACTATGTAAGGCACCACTTCCTTAGCAGCA  987

seq1  GTTCCTGAACTATGCAAGCCAGGAGAAAGTTAACTGAGAGCAGCAAAGCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAACTATGCAAGCCAGGAGAAAGTTAACTGAGAGCAGCAAAGCA  1037

seq1  GGACCACATTCATTTCTCCTTGTTTCTAACTGCTTTGAATTC  1081
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACATTCATTTCTCCTTGTTTCTAACTGCTTTGAATTC  1079


seq1: chr16_5991364_5992302
seq2: B6Ng01-047H21.g_66_989

seq1  GAATTCATTCTTCTCTTCTAACCCCTCACAGGATCTAACCAAATCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTCTCTTCTAACCCCTCACAGGATCTAACCAAATCATTGT  50

seq1  CTTTCCTCCAAACACTCTGGTCTTTGCTCCTTCTTCCTACTTGCCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCAAACACTCTGGTCTTTGCTCCTTCTTCCTACTTGCCTTTAG  100

seq1  TGCATTTTATCTACCCAACATTTTCTCTTTTTGTTTATGGGTTGTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTATCTACCCAACATTTTCTCTTTTTGTTTATGGGTTGTGTCAG  150

seq1  TCATTCAGGAACCAGCACAGTTTTTATTGCTTCCTCAGAAATGCCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGGAACCAGCACAGTTTTTATTGCTTCCTCAGAAATGCCCTTTC  200

seq1  CTTTGTCTAAGTAGAAGAGATTCTTCCTCCTTTCTGGTTCTTTAAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAAGTAGAAGAGATTCTTCCTCCTTTCTGGTTCTTTAAGTCTC  250

seq1  TTTCAGTTCTGGATCATGGCTGCAATATTTTATGGCATGATCATGATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTGGATCATGGCTGCAATATTTTATGGCATGATCATGATCTA  300

seq1  CACTTAATGAACATAGGATGAGCATCTCTAATCCAAAAGTCCCAAAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATGAACATAGGATGAGCATCTCTAATCCAAAAGTCCCAAAGCTC  350

seq1  AGTCATTACTAGAGTGCTTGCCCGGGGACATGAGTAGCAGAGACTGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTACTAGAGTGCTTGCCCGGGGACATGAGTAGCAGAGACTGGTCC  400

seq1  CCAGCATTGGAAAGACAGAGAATAAGAGAGAGAAAGAGATGGGTGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGGAAAGACAGAGAATAAGAGAGAGAAAGAGATGGGTGGCAGA  450

seq1  GAAGGAAAAGGACCTCCTTCTGAACATCAACCCTCTTGTGCCCAGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGGACCTCCTTCTGAACATCAACCCTCTTGTGCCCAGTGTGA  500

seq1  AGCTGCCCTGGAAATTTCCATGTGATAGAAACTTTATTTCATGCACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTGGAAATTTCCATGTGATAGAAACTTTATTTCATGCACAAAA  550

seq1  TTTGGATGAGTGTTTTATGAAACTTCCTTTAGACCACAATGTGAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGAGTGTTTTATGAAACTTCCTTTAGACCACAATGTGAAAGAAA  600

seq1  TGCATAAAACATGAATGAATTTTATATTTAGACTTGGGTTCTGTCCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAACATGAATGAATTTTATATTTAGACTTGGGTTCTGTCCCTAT  650

seq1  GTTATCTCATAAATATGCAAATTTTCCTAACTCTTACAACACCTAAAACC  700
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GTTATCTCAT-AATATGCAAATTTTCCTAACTCTTAC-ACACCTAAAACC  698

seq1  CAAACCTTTGGACTCATGCATTTCAGATGAGTGATCCTCAACCTACAGTC  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AACCTTTGGACTCATGCATTTCAGATGAGTGATCCTCAACCTACAGTC  747

seq1  TGGTAAGTAGGTGAATTAGTAAAGCAAACACCACGGAGCTAGGGAGAACA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGTAAGTAGGTGAATTAGTAAAGCAAACACCACGGAGCTAGGGAG-ACA  796

seq1  GATGAAGGCAGAGGCTAAGCTGCACTTAGTTCAG-CTCTGAGCTACACTT  849
      |||||||||||||||||||||||   |||||||| ||||||||||||| |
seq2  GATGAAGGCAGAGGCTAAGCTGCCACTAGTTCAGCCTCTGAGCTACAC-T  845

seq1  TGTTCTAGCTGTCCTTCTACCATTTATTATTTACCAACACTTTTCAGCAA  899
      || |||||||||||||||||||||||||| ||||  ||||||||||||| 
seq2  TGGTCTAGCTGTCCTTCTACCATTTATTA-TTAC--ACACTTTTCAGCA-  891

seq1  TAACGTGGAAGAGAAAGGAGCTGTCGTCAGGCACACTGAA  939
        |||||  |||||   |||||||||||| ||||||||||
seq2  -TACGTG--AGAGA---GAGCTGTCGTCA-GCACACTGAA  924


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