BAC Information

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BAC

Clone NameB6Ng01-048L13
Chromosome16 (Build37)
Map Location 17,035,337 - 17,187,759
singlet/doubletdoublet
Overlap geneMapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L13.bB6Ng01-048L13.g
ACCDH873196DH873197
length6001,035
definitionDH873196|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L13, 5' end.DH873197|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,187,163 - 17,187,759)(17,035,337 - 17,036,383)
sequence
gaattctgtgatttgggcttctctgagatttgctttctttctatagagtg
gcacatttgtgcctgccttgctctcaatctggggtgtaagtctctgatca
catcttatgtgctgtatatcgtcaacagtgtgaggagtgtcgtcatgact
ggccatctctaccctgtctgccttttccttggcatgtgtttctaattgtt
attgaaatcttggatgatcttctgaactgatgccgttgatagataaatat
ggttttaatgagattttaaccagaaccatgccttatgtttcagttcattt
cagaaagctttgtgttaataactataaacaccctcagtttcctctgtcac
attatagacagtaaaaaaatctacattgttgtattttagatttttaagaa
acaggatacgccgggcatggtggtgcaggccttttaattccagtactcag
gaggcagaggcaggtggatttctgcgttcaaggccagcctggtctacaga
gtgagttttcaggacagccagggctacacagagaaaccctgtctttgaaa
aaccaaaaagaaaaacaatttaaagaaattcttttatatatgtttgtttc

gaattcaacctgggttctctacaccagcagtcagtattattaaccactaa
accatctctccagccccattcatatatagtttttaaagagagacatacag
tggttccatagagccttgagggtcagctcaaaggaaaatggaaagcattc
actaacaaatcctgcttctcaccactgcaaaatcctttatctttgtagct
ctggatttactggataaaatgttgacatttaaccctcacaagaggattga
agttgaacaggctctggcccacccatacctggagcagtattatgacccaa
gtgatgaggtaagagcttatgttcctggctgttgtcaggaatgttcagtc
gtcctagaacagaagccctagccgtgtccttgtcaagattttcctaagga
acattatggtatgcccttctcctcagcttggagttcctacctgtaggccc
ttggtgtttgcctcagaagaattcctccaggttagctgctgcaggtagaa
gagcagtacatgcccaagggaagataactgcaccaccgtgaggcataaaa
actgggagccagggccttaaaatactatgaccagggcaacttaaaaacaa
aagtgttaccgggcagtggtggcacacgcctttaatcccagcacttggga
ggcagaggcaggcagatttctgagttcgaggccagccagggctatacaga
gaaaccctatcttgaaaaccaaaaaaagtgtttaatttcagaggattaga
gtccatgacttcatgatgggggcatggaaacggataggtacagcatagca
ctagagcagtagctgagactcaaatgatataagtctcctacagcttcaag
ggcctctcctggtgccacatttccaccaacaggcccaccaataatccttt
cccaacagttcaccgactgggaaccagttatcaaagtatgagccagtaga
acccaatatttgtatactaccacagctagaaatgcatggtcatgcagaaa
agctacgtgactgccctgagaagtgaaagtgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17187163_17187759
seq2: B6Ng01-048L13.b_47_646 (reverse)

seq1  GAAACAAACATATATAAA--GATTTCTTTAAATTGTTTTTCTTTTTTGGT  48
      ||||||||||||||||||   |||||||||||||||||||| ||||||||
seq2  GAAACAAACATATATAAAAGAATTTCTTTAAATTGTTTTTC-TTTTTGGT  49

seq1  TTTTC-AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG-AAACTCA  96
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCAAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAAACTCA  99

seq1  CTCTGTAGACCAGGCTGGCCTTGAACGCAGAAATCCACCTGCCTCTGCCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTTGAACGCAGAAATCCACCTGCCTCTGCCT  149

seq1  CCTGAGTACTGGAATTAAAAGGCCTGCACCACCATGCCCGGCGTATCCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTACTGGAATTAAAAGGCCTGCACCACCATGCCCGGCGTATCCTG  199

seq1  TTTCTTAAAAATCTAAAATACAACAATGTAGATTTTTTTACTGTCTATAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAAATCTAAAATACAACAATGTAGATTTTTTTACTGTCTATAA  249

seq1  TGTGACAGAGGAAACTGAGGGTGTTTATAGTTATTAACACAAAGCTTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGAGGAAACTGAGGGTGTTTATAGTTATTAACACAAAGCTTTCT  299

seq1  GAAATGAACTGAAACATAAGGCATGGTTCTGGTTAAAATCTCATTAAAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACTGAAACATAAGGCATGGTTCTGGTTAAAATCTCATTAAAAC  349

seq1  CATATTTATCTATCAACGGCATCAGTTCAGAAGATCATCCAAGATTTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATCTATCAACGGCATCAGTTCAGAAGATCATCCAAGATTTCAA  399

seq1  TAACAATTAGAAACACATGCCAAGGAAAAGGCAGACAGGGTAGAGATGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTAGAAACACATGCCAAGGAAAAGGCAGACAGGGTAGAGATGGC  449

seq1  CAGTCATGACGACACTCCTCACACTGTTGACGATATACAGCACATAAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGACGACACTCCTCACACTGTTGACGATATACAGCACATAAGAT  499

seq1  GTGATCAGAGACTTACACCCCAGATTGAGAGCAAGGCAGGCACAAATGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGAGACTTACACCCCAGATTGAGAGCAAGGCAGGCACAAATGTG  549

seq1  CCACTCTATAGAAAGAAAGCAAATCTCAGAGAAGCCCAAATCACAGAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTATAGAAAGAAAGCAAATCTCAGAGAAGCCCAAATCACAGAATT  599

seq1  C  597
      |
seq2  C  600

seq1: chr16_17035337_17036383
seq2: B6Ng01-048L13.g_67_1101

seq1  GAATTCAACCTGGGTTCTCTACACCAGCAGTCAGTATTATTAACCACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTGGGTTCTCTACACCAGCAGTCAGTATTATTAACCACTAA  50

seq1  ACCATCTCTCCAGCCCCATTCATATATAGTTTTTAAAGAGAGACATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTCCAGCCCCATTCATATATAGTTTTTAAAGAGAGACATACAG  100

seq1  TGGTTCCATAGAGCCTTGAGGGTCAGCTCAAAGGAAAATGGAAAGCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCATAGAGCCTTGAGGGTCAGCTCAAAGGAAAATGGAAAGCATTC  150

seq1  ACTAACAAATCCTGCTTCTCACCACTGCAAAATCCTTTATCTTTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAATCCTGCTTCTCACCACTGCAAAATCCTTTATCTTTGTAGCT  200

seq1  CTGGATTTACTGGATAAAATGTTGACATTTAACCCTCACAAGAGGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTACTGGATAAAATGTTGACATTTAACCCTCACAAGAGGATTGA  250

seq1  AGTTGAACAGGCTCTGGCCCACCCATACCTGGAGCAGTATTATGACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACAGGCTCTGGCCCACCCATACCTGGAGCAGTATTATGACCCAA  300

seq1  GTGATGAGGTAAGAGCTTATGTTCCTGGCTGTTGTCAGGAATGTTCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGGTAAGAGCTTATGTTCCTGGCTGTTGTCAGGAATGTTCAGTC  350

seq1  GTCCTAGAACAGAAGCCCTAGCCGTGTCCTTGTCAAGATTTTCCTAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAACAGAAGCCCTAGCCGTGTCCTTGTCAAGATTTTCCTAAGGA  400

seq1  ACATTATGGTATGCCCTTCTCCTCAGCTTGGAGTTCCTACCTGTAGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGGTATGCCCTTCTCCTCAGCTTGGAGTTCCTACCTGTAGGCCC  450

seq1  TTGGTGTTTGCCTCAGAAGAATTCCTCCAGGTTAGCTGCTGCAGGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTGCCTCAGAAGAATTCCTCCAGGTTAGCTGCTGCAGGTAGAA  500

seq1  GAGCAGTACATGCCCAAGGGAAGATAACTGCACCACCGTGAGGCATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTACATGCCCAAGGGAAGATAACTGCACCACCGTGAGGCATAAAA  550

seq1  ACTGGGAGCCAGGGCCTTAAAATACTATGACCAGGGCAACTTAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGCCAGGGCCTTAAAATACTATGACCAGGGCAACTTAAAAACAA  600

seq1  AAGTGTTACCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTACCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGA  650

seq1  GGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCAGGGCTATACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCAGGGCTATACAGA  700

seq1  GAAACCCTATCTTGAAAAACCAAAAAAAGTGTTTAATTTCAGAGGATTAG  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAACCCTATCTTG-AAAACCAAAAAAAGTGTTTAATTTCAGAGGATTAG  749

seq1  AGTCCATGACTTCATGATGGGGGCATGGAAACGGATAGGTACAGCATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGACTTCATGATGGGGGCATGGAAACGGATAGGTACAGCATAGC  799

seq1  ACTAGAGCAGTAGCTGAGAACTCAAAATGATATAAGTCTCCTACAGCCTC  850
      |||||||||||||||||| |||| ||||||||||||||||||||||| ||
seq2  ACTAGAGCAGTAGCTGAG-ACTC-AAATGATATAAGTCTCCTACAGCTTC  847

seq1  AAAGGCCTCTCCT-GTGCCACATTTCCACCAACAAGGCCACACAATAATC  899
      || |||||||||| |||||||||||||||||||| | |||| ||||||||
seq2  AAGGGCCTCTCCTGGTGCCACATTTCCACCAACAGGCCCAC-CAATAATC  896

seq1  TTTCCCAAACAGTTCACCGACTGGGAACCAAGTATCAAAGTATGAGCCAG  949
       || || |||||||||||||||||||||||  ||||||||||||||||||
seq2  CTTTCCCAACAGTTCACCGACTGGGAACCAGTTATCAAAGTATGAGCCAG  946

seq1  TAGAACCCAATATTTTGTATACTACCACAGCTAGAAATTGCAGTGGTCCA  999
      |||||||||||| |||||||||||||||||||||||| |||| |||| ||
seq2  TAGAACCCAATA-TTTGTATACTACCACAGCTAGAAA-TGCA-TGGT-CA  992

seq1  TGGCAGAAAAGGCTACGTGAACTGGCCCTGAGGAAGTGAGAGTGAGGA  1047
      | |||||||| |||||||| ||| ||||||| ||||||| ||||||||
seq2  T-GCAGAAAA-GCTACGTG-ACT-GCCCTGA-GAAGTGAAAGTGAGGA  1035