BAC Information

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BAC

Clone NameB6Ng01-049I11
Chromosome16 (Build37)
Map Location 58,063,009 - 58,155,709
singlet/doubletdoublet
Overlap geneLOC100043477
Upstream gene2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
Downstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049I11.bB6Ng01-049I11.g
ACCDH873761DH873762
length1,053962
definitionDH873761|Mus musculus domesticus DNA, BAC clone: B6Ng01-049I11, 5' end.DH873762|Mus musculus domesticus DNA, BAC clone: B6Ng01-049I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,063,009 - 58,064,066)(58,154,736 - 58,155,709)
sequence
gaattcaaagccatatgcacaaaatgaaatttgtgtaaaccgaagtctct
ttaaaagtcacctaagtctcttaagcaggtacatgccaaggaccagaaaa
gctttttttttttttcctagtagtctaatccatttgtatattctcaagca
ttaaagttgatcatggatattaaggtctagtgttaggtaagacattaact
atgaatttagacagtaaaattagctttaaaacatttaatttttataaaat
ctagactcactgaggaggtataataaatcaataaggatatgtatgtcttc
ataatcccaactattaagaagaaattcactgagagatgctttgaaattta
gagaaatgcagaggttgacctgtcccatgttctcatgctatgacatattc
tgaatttaaaaaatgtaagtcattagtggcttgtggtttggttaatattt
tatttttgttttggcttcatgtatggactatatggttattaaccttgtat
aaatataaatcatcgtatctgatcttaacatagaaaattttccaccagaa
gtttaggataatagaaatgtttttttgaaatttagtatctgctaccaata
tcacataacaatatgcatgtcataatttgcatatcaagaatgttatctgt
ctacctttacagctccctctgaaactttcctcacgtgtgcactttctggt
gtttctagaaggcccttggctgttctagtgccctatgaaatatagctcca
ttggttctattgtacttaatgtgtacatccattgctgtaaatgtaccatt
tagatttaatgtgtgcctgcttagttagtctcttcaaaagcagcgttatt
acattcattcttgcatctcccatatggacagggtctcggtcactctgaga
tagttgctcaataaataaatactcctggatatttattcagagatgttagg
aactgaaaatatgataacaataaagcagtgacagtttgtggaagcctagt
ccaagttttttctctctctttgctaatgctggttgctccgccacttaatt
gca
gaattccacaaaatccagtcctcattatctgaactcgtttgggggagcaa
tgcctcttgttcctctcccagcctctagccctttaagtcactaagggagc
agtttaaaaacagtgaaatacacagcaggaaggtatttgcaactgtaaga
ctctggcctttaccaagactcaggaggttgatcagaattctgtcatgaga
atctgtgcctgtagccgagtcaaaacaaaatatttctgatgattttgccg
ggggaaaaatacagagaattaacagtgagaatgattagtggggtgaggac
taggttagctaagtaaaggtcaccagatggattgctgttgttttattgtt
gttgttgttgttataataataataattattaaaatgactcctagagaaaa
tgtgagctaattccctaactgattgttaattaccagcagaatttgattta
gagtgaccaggcagaggttctgttgacctcaaacctgttctgcctcaagc
agaaaaactaatttaaatgaggttagcaagtaagctggtactaaggatag
caggtttagttagatttcaggaagacatgcttgactctagagatgactgg
tgctaattcagggcagcaaagaagggatggtaggaaacccagccctgaag
tacattcacctagcactgcattgggttttataagtcaatacgtgctgatg
gcagagtcaggacagaaatcatttttgtgctgctctagcttactatacac
ttttatttatgaattcctggtgaaataattttgcctcaatgatttaaata
gaaatgaaatggtgaacgattgcaatatctgtgtaaataaagcttttaat
ataataggatcactataatattttgaaagaaatatgtatattggacctgg
gagatgctcaccaggtaaagggacttgtttccagccttgaaactgaattc
atcctgtggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_58063009_58064066
seq2: B6Ng01-049I11.b_46_1098

seq1  GAATTCAAAGCCATATGCACAAAATGAAATTTGTGTAAACCGAAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCATATGCACAAAATGAAATTTGTGTAAACCGAAGTCTCT  50

seq1  TTAAAAGTCACCTAAGTCTCTTAAGCAGGTACATGCCAAGGACCAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCACCTAAGTCTCTTAAGCAGGTACATGCCAAGGACCAGAAAA  100

seq1  GCTTTTTTTTTTTTTCCTAGTAGTCTAATCCATTTGTATATTCTCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTTTTTCCTAGTAGTCTAATCCATTTGTATATTCTCAAGCA  150

seq1  TTAAAGTTGATCATGGATATTAAGGTCTAGTGTTAGGTAAGACATTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGATCATGGATATTAAGGTCTAGTGTTAGGTAAGACATTAACT  200

seq1  ATGAATTTAGACAGTAAAATTAGCTTTAAAACATTTAATTTTTATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTAGACAGTAAAATTAGCTTTAAAACATTTAATTTTTATAAAAT  250

seq1  CTAGACTCACTGAGGAGGTATAATAAATCAATAAGGATATGTATGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCACTGAGGAGGTATAATAAATCAATAAGGATATGTATGTCTTC  300

seq1  ATAATCCCAACTATTAAGAAGAAATTCACTGAGAGATGCTTTGAAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCAACTATTAAGAAGAAATTCACTGAGAGATGCTTTGAAATTTA  350

seq1  GAGAAATGCAGAGGTTGACCTGTCCCATGTTCTCATGCTATGACATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCAGAGGTTGACCTGTCCCATGTTCTCATGCTATGACATATTC  400

seq1  TGAATTTAAAAAATGTAAGTCATTAGTGGCTTGTGGTTTGGTTAATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAAAAAATGTAAGTCATTAGTGGCTTGTGGTTTGGTTAATATTT  450

seq1  TATTTTTGTTTTGGCTTCATGTATGGACTATATGGTTATTAACCTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTTTTGGCTTCATGTATGGACTATATGGTTATTAACCTTGTAT  500

seq1  AAATATAAATCATCGTATCTGATCTTAACATAGAAAATTTTCCACCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATCATCGTATCTGATCTTAACATAGAAAATTTTCCACCAGAA  550

seq1  GTTTAGGATAATAGAAATGTTTTTTTGAAATTTAGTATCTGCTACCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGATAATAGAAATGTTTTTTTGAAATTTAGTATCTGCTACCAATA  600

seq1  TCACATAACAATATGCATGTCATAATTTGCATATCAAGAATGTTATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAACAATATGCATGTCATAATTTGCATATCAAGAATGTTATCTGT  650

seq1  CTACCTTTACAGCTCCCTCTGAAACTTTCCTCACGTGTGCACTTTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTACAGCTCCCTCTGAAACTTTCCTCACGTGTGCACTTTCTGGT  700

seq1  GTTTCTAGAAGGCCCTTGGCTGTTCTAGTGCCCTATGAAATATAGCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAAGGCCCTTGGCTGTTCTAGTGCCCTATGAAATATAGCTCCA  750

seq1  TTGGTTCTATTGTACTTAATGTGTACATCCATTGCTGTAAATGTACCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTATTGTACTTAATGTGTACATCCATTGCTGTAAATGTACCATT  800

seq1  TAGATTTAATGTGTGCCTGCTTAGTTAGTCTCTTCAAAAGCAGCGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGATTTAATGTGTGCCTGCTTAGTTAGTCTCTTCAAAAGCAGCG-TTAT  849

seq1  TACATTCATTCTTGCATCTCCCATATGGACAGGGTCTCGGTCACTCTGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACATTCATTCTTGCATCTCCCATATGGACAGGGTCTCGGTCACTCTG-A  898

seq1  GATAGTTGCTCAATAAATAAATACTCCTGGATATTTATTCAGAGAATGTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATAGTTGCTCAATAAATAAATACTCCTGGATATTTATTCAGAG-ATGTT  947

seq1  AGGAAACTGAAAATATGATAACAATAAAGCAGTGATCAGTTTGTGG-AGC  999
      ||| ||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AGG-AACTGAAAATATGATAACAATAAAGCAGTGA-CAGTTTGTGGAAGC  995

seq1  CTAAGCTCAAAGTTTTTTCTCTC-CTTTGCTAATGCTGGTTGTCTCAG-C  1047
      |||   || |||||||||||||| |||||||||||||||||| ||| | |
seq2  CTA--GTCCAAGTTTTTTCTCTCTCTTTGCTAATGCTGGTTG-CTCCGCC  1042

seq1  ACTTAAATGCA  1058
      |||||| ||||
seq2  ACTTAATTGCA  1053

seq1: chr16_58154736_58155709
seq2: B6Ng01-049I11.g_67_1028 (reverse)

seq1  TATCCACAAGGATTGAACTCAGTTTTACAAGGCTTGGAAACAAGTCCCTT  50
      ||||||| |||| |||| |||||||  |||||| ||||||||||||||||
seq2  TATCCAC-AGGA-TGAATTCAGTTT--CAAGGC-TGGAAACAAGTCCCTT  45

seq1  TACCTGCTGAGCCATCTCCCAGGTCCAATTATACATATTTCCTTTTCAAA  100
      |||||| |||| |||||||||||||||| ||||||||||||  |||||||
seq2  TACCTGGTGAG-CATCTCCCAGGTCCAA-TATACATATTTC--TTTCAAA  91

seq1  ATATTATAGTGATTCCTATTATATTAAAAGCTTTATTTTACACAGAATAT  150
      |||||||||||| |||||||||||||||||||||| ||||||||| ||||
seq2  ATATTATAGTGA-TCCTATTATATTAAAAGCTTTA-TTTACACAG-ATAT  138

seq1  TGCAATCGTTCACCATTTCATTTTCTATTTAAATCATTGAGGCAAAATTA  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCAATCGTTCACCATTTCA-TTTCTATTTAAATCATTGAGGCAAAATTA  187

seq1  TTTCACCAGGAATTCATAAATAAAAGTGTATAGTAAGCTAGAGCAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGGAATTCATAAATAAAAGTGTATAGTAAGCTAGAGCAGCACA  237

seq1  AAAATGATTTCTGTCCTGACTCTGCCATCAGCACGTATTGACTTAT-AAA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAATGATTTCTGTCCTGACTCTGCCATCAGCACGTATTGACTTATAAAA  287

seq1  CCCAATGCAGTGCTAGGTGAATGTACTTCAGGGCTGGGTTTCCTACCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCAGTGCTAGGTGAATGTACTTCAGGGCTGGGTTTCCTACCATC  337

seq1  CCTTCTTTGCTGCCCTGAATTAGCACCAGTCATCTCTAGAGTCAAGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTGCTGCCCTGAATTAGCACCAGTCATCTCTAGAGTCAAGCATG  387

seq1  TCTTCCTGAAATCTAACTAAACCTGCTATCCTTAGTACCAGCTTACTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAAATCTAACTAAACCTGCTATCCTTAGTACCAGCTTACTTGC  437

seq1  TAACCTCATTTAAATTAGTTTTTCTGCTTGAGGCAGAACAGGTTTGAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCATTTAAATTAGTTTTTCTGCTTGAGGCAGAACAGGTTTGAGGT  487

seq1  CAACAGAACCTCTGCCTGGTCACTCTAAATCAAATTCTGCTGGTAATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAACCTCTGCCTGGTCACTCTAAATCAAATTCTGCTGGTAATTAA  537

seq1  CAATCAGTTAGGGAATTAGCTCACATTTTCTCTAGGAGTCATTTTAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTTAGGGAATTAGCTCACATTTTCTCTAGGAGTCATTTTAATAA  587

seq1  TTATTATTATTATAACAACAACAACAACAATAAAACAACAGCAATCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATAACAACAACAACAACAATAAAACAACAGCAATCCATC  637

seq1  TGGTGACCTTTACTTAGCTAACCTAGTCCTCACCCCACTAATCATTCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCTTTACTTAGCTAACCTAGTCCTCACCCCACTAATCATTCTCA  687

seq1  CTGTTAATTCTCTGTATTTTTCCCCCGGCAAAATCATCAGAAATATTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATTCTCTGTATTTTTCCCCCGGCAAAATCATCAGAAATATTTTG  737

seq1  TTTTGACTCGGCTACAGGCACAGATTCTCATGACAGAATTCTGATCAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTCGGCTACAGGCACAGATTCTCATGACAGAATTCTGATCAACC  787

seq1  TCCTGAGTCTTGGTAAAGGCCAGAGTCTTACAGTTGCAAATACCTTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTCTTGGTAAAGGCCAGAGTCTTACAGTTGCAAATACCTTCCTG  837

seq1  CTGTGTATTTCACTGTTTTTAAACTGCTCCCTTAGTGACTTAAAGGGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTTCACTGTTTTTAAACTGCTCCCTTAGTGACTTAAAGGGCTA  887

seq1  GAGGCTGGGAGAGGAACAAGAGGCATTGCTCCCCCAAACGAGTTCAGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGAGAGGAACAAGAGGCATTGCTCCCCCAAACGAGTTCAGATA  937

seq1  ATGAGGACTGGATTTTGTGGAATTC  974
      |||||||||||||||||||||||||
seq2  ATGAGGACTGGATTTTGTGGAATTC  962