BAC Information

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BAC

Clone NameB6Ng01-052K04
Chromosome16 (Build37)
Map Location 42,185,150 - 42,306,238
singlet/doubletdoublet
Overlap geneGap43
Upstream geneEG667450, Lsamp
Downstream geneBC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K04.bB6Ng01-052K04.g
ACCDH875928DH875929
length5791,138
definitionDH875928|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K04, 5' end.DH875929|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,305,676 - 42,306,238)(42,185,150 - 42,186,294)
sequence
gaattcttgtttgggaggtaattgcttcttgcataggcttgttttgaaga
acaaaagctcgagcctctgtcccagacctctcagaagaacagtgagggcc
aatgggctgggctcctttcttagtcttcttaaatcaaccagcttgctcct
gctgcttatgcagagacctgggtgggttacacagcaggtgacaaagaatg
ggaaaagctaactgggtcaattggaagtctgtctccatttttttttccct
gacttggaggctgctaagggcacattagcatcccttaggctatgttcact
gtttccttcagcgggacaaggggagaccatagcaaagggctggatggttt
ctttacctcagcagaatcagacatttgcaaactaagtaagaatcatggaa
gatgttacaaaagagaaagccagctaaggcaaaaccagggactccatttg
aaaacaatgacccttcggaattattagtattcatttacatttatttaggt
ttcttgagtaactgcacacagtcctctctctctctctctctctctctctc
tctctctctctctgtgtgtgtgtgtgtgt
gaattctttctaggtgggggaattgcctcgattcaaaaacgcttgggtca
tgcatttgacatctcccttggtaagcagactttgtcagtatagaccgtgg
gaaggggaggtaagaggaccgggagtttgatacacagtgagtataaagcc
agcctaggctaaataatatcaagtctcgaaaagaaggaaaggaggggaga
aatggaagggaggagagaggaagaaagtgccttataattctggatcttct
aaccagcctcccacctcttcaccttcccacagaccccacccactacagtg
gtgcctggtgactatgggtcaggtcaggtgagttagggacccctttatct
ctcctgctgcgcacccacaatccacagctttcagcatgtgtcttgagggt
aatgactgttacaacctagaaagacaccgaggccttcttatacatctttt
ttatttattttattttaacatattccattttccagagagaactcaagccc
aagccagacttcttgttttagcagatgaaggtttcttattccatgtaaca
gcacgttggtgtttccttctcttaatcacaatgcatggaggtgtaaaggt
actgtcaagaagttgaacaaaccaagaatcccatttaaccaatgctgcct
tgcaccttgaatgcacagaagagaacaaaggaaacatgtctccaagcaca
gttaatgttgagagcacaagcccgtgccctctgaagacatatcatctctc
tcactcaaagcactccacggaaaacaagttcctcacccttctcaaagatc
ttttgaaaatatgaaataatgaagcaaaggttaaaataaaatcccccaat
ggttacagtcacagttcccattaacattttaaatggttatttttaatggt
acatttaactaaagctaacttatccatgggaaagaatgtggccattaaga
ccagcatctgtgaacaactgaggttcacattccggtggtgcgtgatttta
taacagcaagaatattacatgtctaacagcagactcattagcattaattg
ctgcattaagtcccactttaaacctcttgtactataacattttgctaatg
catctccattttgaaagaaataactctaatgtttatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42305676_42306238
seq2: B6Ng01-052K04.b_42_604 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGTGTGC  50

seq1  AGTTACTCAAGAAACCTAAATAAATGTAAATGAATACTAATAATTCCGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCAAGAAACCTAAATAAATGTAAATGAATACTAATAATTCCGAA  100

seq1  GGGTCATTGTTTTCAAATGGAGTCCCTGGTTTTGCCTTAGCTGGCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTGTTTTCAAATGGAGTCCCTGGTTTTGCCTTAGCTGGCTTTCT  150

seq1  CTTTTGTAACATCTTCCATGATTCTTACTTAGTTTGCAAATGTCTGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAACATCTTCCATGATTCTTACTTAGTTTGCAAATGTCTGATTC  200

seq1  TGCTGAGGTAAAGAAACCATCCAGCCCTTTGCTATGGTCTCCCCTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGTAAAGAAACCATCCAGCCCTTTGCTATGGTCTCCCCTTGTCC  250

seq1  CGCTGAAGGAAACAGTGAACATAGCCTAAGGGATGCTAATGTGCCCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAAGGAAACAGTGAACATAGCCTAAGGGATGCTAATGTGCCCTTAG  300

seq1  CAGCCTCCAAGTCAGGGAAAAAAAAATGGAGACAGACTTCCAATTGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCAAGTCAGGGAAAAAAAAATGGAGACAGACTTCCAATTGACCC  350

seq1  AGTTAGCTTTTCCCATTCTTTGTCACCTGCTGTGTAACCCACCCAGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTTTTCCCATTCTTTGTCACCTGCTGTGTAACCCACCCAGGTCT  400

seq1  CTGCATAAGCAGCAGGAGCAAGCTGGTTGATTTAAGAAGACTAAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAGCAGCAGGAGCAAGCTGGTTGATTTAAGAAGACTAAGAAAGG  450

seq1  AGCCCAGCCCATTGGCCCTCACTGTTCTTCTGAGAGGTCTGGGACAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCCATTGGCCCTCACTGTTCTTCTGAGAGGTCTGGGACAGAGG  500

seq1  CTCGAGCTTTTGTTCTTCAAAACAAGCCTATGCAAGAAGCAATTACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGCTTTTGTTCTTCAAAACAAGCCTATGCAAGAAGCAATTACCTCC  550

seq1  CAAACAAGAATTC  563
      |||||||||||||
seq2  CAAACAAGAATTC  563

seq1: chr16_42185150_42186294
seq2: B6Ng01-052K04.g_68_1205

seq1  GAATTCTTTCTAGGTGGGGGAATTGCCTCGATTCAAAAACGCTTGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGGTGGGGGAATTGCCTCGATTCAAAAACGCTTGGGTCA  50

seq1  TGCATTTGACATCTCCCTTGGTAAGCAGACTTTGTCAGTATAGACCGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGACATCTCCCTTGGTAAGCAGACTTTGTCAGTATAGACCGTGG  100

seq1  GAAGGGGAGGTAAGAGGACCGGGAGTTTGATACACAGTGAGTATAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAGGTAAGAGGACCGGGAGTTTGATACACAGTGAGTATAAAGCC  150

seq1  AGCCTAGGCTAAATAATATCAAGTCTCGAAAAGAAGGAAAGGAGGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGCTAAATAATATCAAGTCTCGAAAAGAAGGAAAGGAGGGGAGA  200

seq1  AATGGAAGGGAGGAGAGAGGAAGAAAGTGCCTTATAATTCTGGATCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGGAGGAGAGAGGAAGAAAGTGCCTTATAATTCTGGATCTTCT  250

seq1  AACCAGCCTCCCACCTCTTCACCTTCCCACAGACCCCACCCACTACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCCTCCCACCTCTTCACCTTCCCACAGACCCCACCCACTACAGTG  300

seq1  GTGCCTGGTGACTATGGGTCAGGTCAGGTGAGTTAGGGACCCCTTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGTGACTATGGGTCAGGTCAGGTGAGTTAGGGACCCCTTTATCT  350

seq1  CTCCTGCTGCGCACCCACAATCCACAGCTTTCAGCATGTGTCTTGAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGCGCACCCACAATCCACAGCTTTCAGCATGTGTCTTGAGGGT  400

seq1  AATGACTGTTACAACCTAGAAAGACACCGAGGCCTTCTTATACATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGTTACAACCTAGAAAGACACCGAGGCCTTCTTATACATCTTTT  450

seq1  TTATTTATTTTATTTTAACATATTCCATTTTCCAGAGAGAACTCAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTATTTTAACATATTCCATTTTCCAGAGAGAACTCAAGCCC  500

seq1  AAGCCAGACTTCTTGTTTTAGCAGATGAAGGTTTCTTATTCCATGTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGACTTCTTGTTTTAGCAGATGAAGGTTTCTTATTCCATGTAACA  550

seq1  GCACGTTGGTGTTTCCTTCTCTTAATCACAATGCATGGAGGTGTAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTTGGTGTTTCCTTCTCTTAATCACAATGCATGGAGGTGTAAAGGT  600

seq1  ACTGTCAAGAAGTTGAACAAACCAAGAATCCCATTTAACCAATGCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAGAAGTTGAACAAACCAAGAATCCCATTTAACCAATGCTGCCT  650

seq1  TGCACCTTGAATGCACAGAAGAGAACAAAGGAAACATGTCTCCAAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTGAATGCACAGAAGAGAACAAAGGAAACATGTCTCCAAGCACA  700

seq1  GTTAATGTTGAGAGCACAAGCCCGTGCCCTCTGAAGACATATCATCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTGAGAGCACAAGCCCGTGCCCTCTGAAGACATATCATCTCTC  750

seq1  TCACTCAAAGCACTCCACGGAAAACAAGTTCCTCA-CCTTCTCAAAGATC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCACTCAAAGCACTCCACGGAAAACAAGTTCCTCACCCTTCTCAAAGATC  800

seq1  TTTTGAAAATATGAAATAATGAAGCAAAGGTTAAAATAAAATCCCCCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATATGAAATAATGAAGCAAAGGTTAAAATAAAATCCCCCAAT  850

seq1  GGTTACAGTCACAGTTCCCATTAACATTTTAAATGGTTATTTTTAATGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGTCACAGTTCCCATTAACATTTTAAATGGTTATTTTTAATGGT  900

seq1  ACATTTAACTAAAGCTAACTTATCCATGGGAAAAGAATGTGGCCATTAAG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATTTAACTAAAGCTAACTTATCCATGGG-AAAGAATGTGGCCATTAAG  949

seq1  ACCAGCATCTGTTGAACAAACTGAGGTTCCACATT-CGGTGGTGCGTGAT  998
      ||||||||||| ||||| |||||||||| |||||| ||||||||||||||
seq2  ACCAGCATCTG-TGAAC-AACTGAGGTT-CACATTCCGGTGGTGCGTGAT  996

seq1  TTTATAACAGCAAGAATATTACATG-CTAACAGCAGACTCATTAGCATTA  1047
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTATAACAGCAAGAATATTACATGTCTAACAGCAGACTCATTAGCATTA  1046

seq1  ATTGCTGCATTTAGTCCCACTTAAAACCTCCTGTATCTATAACA-TTTGC  1096
      ||||||||||| |||||||||| ||||||| |||| |||||||| |||||
seq2  ATTGCTGCATTAAGTCCCACTTTAAACCTCTTGTA-CTATAACATTTTGC  1095

seq1  TAAATGCATCATCCATTTTTGGAAAAAGAAATAACCTAAAATG-TTATCA  1145
      | |||||||| ||||||||     |||||||||| ||  |||| ||||||
seq2  T-AATGCATC-TCCATTTT----GAAAGAAATAA-CTCTAATGTTTATCA  1138