BAC Information

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BAC

Clone NameB6Ng01-052L03
Chromosome16 (Build37)
Map Location 49,155,260 - 49,256,802
singlet/doubletdoublet
Overlap geneMyh15, 1700026J12Rik
Upstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
Downstream geneLOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L03.bB6Ng01-052L03.g
ACCDH875971DH875972
length1,0961,199
definitionDH875971|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L03, 5' end.DH875972|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,255,702 - 49,256,802)(49,155,260 - 49,156,475)
sequence
gaattctggactgtataaaaacaaggtgggctgatatttatcagtctgct
tctttaaactctggatggagtgacacagctcctgttgctatggctccctt
accatcataaagtgtgtccctggactgtgagctaaaataaacacttcttt
aagatgctttggtggggtattttatcgaagcaacagaatttatctgccac
accttctgtttgcccagtttaatgaaagatcctgaagaagagatgtagtg
ccccatgtgatttttacaaaatgataatgctcggggaaaagattaatgtg
ttttaaaaatcaaatacacttacacactgagacagtatgccagaaaatgg
tgattttgtttctgaatgtattgctgccatgggcatttgggaggccatgg
ctgagggaactggtattggatggcactgtaagaatggatcttttgcagca
gatgaaagaaaaccaatgcgcatttcatgcttaatggtaactggatgtac
actcctgagaatcttctagggtctggctttttggccaggtcacttcgtac
tacaaaagataaaagctgtagaaagacttggatcaggatgaagggtttga
ctctggttactcacattgtggcttggagccacattttcaacctactttcc
aagcacagcacagaggtctgcaccaaggctcctgaaacacttctggtagg
ggctcctggatctgtctgcaatggtgaccgtttttccctacgcatttgtt
atttgcccaattttaagacgttcgccatgcaaggggctacttgcttgcat
taccctgctcaaaggttgaaattattaaccagctaagaaggaagaaagag
aatgtactggagtcctatgcctcgaggtgctaacagttgagatggacaga
gagcgcgtgctcacagcagcagttcggggtaataactacctccatatgtg
gcccgtggtggcagcgcttcttttgggttcttttcactgtggtaagtgac
tccaatctctcagtctgaggctgtgggctgtggccctggcagcccacagc
atctgccagagtgtagacctgagaaggctctacggagactgggtgc
gaattctcataatctgaatatttttattaaatgatattttataaatctct
agagttttcttcagaattctgtgctcatcctctcaatatcatttggtgtt
gttgctcctcattcaccatggggatatgtggcagaggatgccattagctc
atccatgtgctcccaaatggacccttgcctaataaagtgcttacctccct
gggtttaagttcaacttgaattttatagatagtgttggctttacttgaaa
agactatgtcccttccaaagattgcattgctaatggtaaaacaggcatgt
gtgtgtgtgtgtctgtgtgtctctgtgtgcctctgtgtgtgtgtgtgtgt
gtgtgtgtgtgttttacagtctcagagtgccctgagccatgccctgcagt
cagccaagcatgactatgatcttctgagagagcagtatgaagaagaacaa
gaagtcaaggctgagctgcaccgggctctatctaaaggcaacaaggaaac
agtgcagtggagagcgaagtatgaacatgatgctatgcagagaactgaag
acttggaggaagccaagtgagtagatcaaggctatgctcaaccaagaatt
tgtcatgtacaggagaatgagagtaatgccatgtctcctcatgatgtcgg
cttaacaaatccttcttgagatttttaataagcccaagacaaaagctgaa
acagttacttctggcaagaagcatataatatagaaaagctaaactatttg
taatataggttatttgaggctataaaaaggtcttagaaaaagaaaaaggc
tctttctaggggcataataaaaatacttctagagttctgggactttgagt
tatgctttaaaaattgggccactagcacttgttgctggggaccagctcca
gtagaatacaggacctgaagagggtggacataacaggtgactcaagattg
ctccacagcagtctgaatctttcctgagcttctgagatgtatcgtcgtgt
ctgtactcgagagaacaattacgaaactgaagctgctttccatggccaca
gggttcattttatttcttacgcaatattaccaccattttcatatttgcca
ttcaaggaatttctaatcctgcctattcaagagagattagaccaaacatt
ttagtgatagcctaagttcagggtcacatccgtgctagtcagacaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49255702_49256802
seq2: B6Ng01-052L03.b_50_1145 (reverse)

seq1  GCACCCAGTCTCCGTAGAGCCCTCTCAGGTCTACACTCTGGGCAGATGCC  50
      ||||||||||||||||||||| ||||||||||||||||| ||||||||| 
seq2  GCACCCAGTCTCCGTAGAGCCTTCTCAGGTCTACACTCT-GGCAGATGC-  48

seq1  TTGTGGGGCTGGCAGGG-CACAGCCCACAGGCCTCAGGACTGAGAGATTG  99
       ||| |||||| ||||| ||||||||||| |||||| |||||||||||||
seq2  -TGT-GGGCTGCCAGGGCCACAGCCCACA-GCCTCA-GACTGAGAGATTG  94

seq1  GAGTCACTTACCACAGTGAAAAGAACCCAAAAGAAGCGCTGCCACCACGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTACCACAGTGAAAAGAACCCAAAAGAAGCGCTGCCACCACGG  144

seq1  GCCACATATGGAGGTAGTTATTACCCCGAACTGCTGCTGTGAGCACGCGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATATGGAGGTAGTTATTACCCCGAACTGCTGCTGTGAGCACGCGC  194

seq1  TCTCTGTCCATCTCAACTGTTAGCACCTCGAGGCATAGGACTCCAGTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCATCTCAACTGTTAGCACCTCGAGGCATAGGACTCCAGTACA  244

seq1  TTCTCTTTCTTCCTTCTTAGCTGGTTAATAATTTCAACCTTTGAGCAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCTTCCTTCTTAGCTGGTTAATAATTTCAACCTTTGAGCAGGG  294

seq1  TAATGCAAGCAAGTAGCCCCTTGCATGGCGAACGTCTTAAAATTGGGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAGCAAGTAGCCCCTTGCATGGCGAACGTCTTAAAATTGGGCAA  344

seq1  ATAACAAATGCGTAGGGAAAAACGGTCACCATTGCAGACAGATCCAGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATGCGTAGGGAAAAACGGTCACCATTGCAGACAGATCCAGGAG  394

seq1  CCCCTACCAGAAGTGTTTCAGGAGCCTTGGTGCAGACCTCTGTGCTGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCAGAAGTGTTTCAGGAGCCTTGGTGCAGACCTCTGTGCTGTGC  444

seq1  TTGGAAAGTAGGTTGAAAATGTGGCTCCAAGCCACAATGTGAGTAACCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTAGGTTGAAAATGTGGCTCCAAGCCACAATGTGAGTAACCAG  494

seq1  AGTCAAACCCTTCATCCTGATCCAAGTCTTTCTACAGCTTTTATCTTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACCCTTCATCCTGATCCAAGTCTTTCTACAGCTTTTATCTTTTG  544

seq1  TAGTACGAAGTGACCTGGCCAAAAAGCCAGACCCTAGAAGATTCTCAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGAAGTGACCTGGCCAAAAAGCCAGACCCTAGAAGATTCTCAGGA  594

seq1  GTGTACATCCAGTTACCATTAAGCATGAAATGCGCATTGGTTTTCTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATCCAGTTACCATTAAGCATGAAATGCGCATTGGTTTTCTTTCA  644

seq1  TCTGCTGCAAAAGATCCATTCTTACAGTGCCATCCAATACCAGTTCCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCAAAAGATCCATTCTTACAGTGCCATCCAATACCAGTTCCCTC  694

seq1  AGCCATGGCCTCCCAAATGCCCATGGCAGCAATACATTCAGAAACAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGCCTCCCAAATGCCCATGGCAGCAATACATTCAGAAACAAAAT  744

seq1  CACCATTTTCTGGCATACTGTCTCAGTGTGTAAGTGTATTTGATTTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTCTGGCATACTGTCTCAGTGTGTAAGTGTATTTGATTTTTAA  794

seq1  AACACATTAATCTTTTCCCCGAGCATTATCATTTTGTAAAAATCACATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAATCTTTTCCCCGAGCATTATCATTTTGTAAAAATCACATGG  844

seq1  GGCACTACATCTCTTCTTCAGGATCTTTCATTAAACTGGGCAAACAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTACATCTCTTCTTCAGGATCTTTCATTAAACTGGGCAAACAGAAG  894

seq1  GTGTGGCAGATAAATTCTGTTGCTTCGATAAAATACCCCACCAAAGCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCAGATAAATTCTGTTGCTTCGATAAAATACCCCACCAAAGCATC  944

seq1  TTAAAGAAGTGTTTATTTTAGCTCACAGTCCAGGGACACACTTTATGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGTGTTTATTTTAGCTCACAGTCCAGGGACACACTTTATGATG  994

seq1  GTAAGGGAGCCATAGCAACAGGAGCTGTGTCACTCCATCCAGAGTTTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAGCCATAGCAACAGGAGCTGTGTCACTCCATCCAGAGTTTAAA  1044

seq1  GAAGCAGACTGATAAATATCAGCCCACCTTGTTTTTATACAGTCCAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGACTGATAAATATCAGCCCACCTTGTTTTTATACAGTCCAGAAT  1094

seq1  TC  1101
      ||
seq2  TC  1096

seq1: chr16_49155260_49156475
seq2: B6Ng01-052L03.g_67_1265

seq1  GAATTCTCATAATCTGAATATTTTTATTAAATGATATTTTATAAATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAATCTGAATATTTTTATTAAATGATATTTTATAAATCTCT  50

seq1  AGAGTTTTCTTCAGAATTCTGTGCTCATCCTCTCAATATCATTTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTCTTCAGAATTCTGTGCTCATCCTCTCAATATCATTTGGTGTT  100

seq1  GTTGCTCCTCATTCACCATGGGGATATGTGGCAGAGGATGCCATTAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCTCATTCACCATGGGGATATGTGGCAGAGGATGCCATTAGCTC  150

seq1  ATCCATGTGCTCCCAAATGGACCCTTGCCTAATAAAGTGCTTACCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTGCTCCCAAATGGACCCTTGCCTAATAAAGTGCTTACCTCCCT  200

seq1  GGGTTTAAGTTCAACTTGAATTTTATAGATAGTGTTGGCTTTACTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAGTTCAACTTGAATTTTATAGATAGTGTTGGCTTTACTTGAAA  250

seq1  AGACTATGTCCCTTCCAAAGATTGCATTGCTAATGGTAAAACAGGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGTCCCTTCCAAAGATTGCATTGCTAATGGTAAAACAGGCATGT  300

seq1  GTGTGTGTGTGTCTGTGTGTCTCTGTGTGCCTCTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCTGTGTGTCTCTGTGTGCCTCTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTTTTACAGTCTCAGAGTGCCCTGAGCCATGCCCTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTTACAGTCTCAGAGTGCCCTGAGCCATGCCCTGCAGT  400

seq1  CAGCCAAGCATGACTATGATCTTCTGAGAGAGCAGTATGAAGAAGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGCATGACTATGATCTTCTGAGAGAGCAGTATGAAGAAGAACAA  450

seq1  GAAGTCAAGGCTGAGCTGCACCGGGCTCTATCTAAAGGCAACAAGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGGCTGAGCTGCACCGGGCTCTATCTAAAGGCAACAAGGAAAC  500

seq1  AGTGCAGTGGAGAGCGAAGTATGAACATGATGCTATGCAGAGAACTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTGGAGAGCGAAGTATGAACATGATGCTATGCAGAGAACTGAAG  550

seq1  ACTTGGAGGAAGCCAAGTGAGTAGATCAAGGCTATGCTCAACCAAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGGAAGCCAAGTGAGTAGATCAAGGCTATGCTCAACCAAGAATT  600

seq1  TGTCATGTACAGGAGAATGAGAGTAATGCCATGTCTCCTCATGATGTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTACAGGAGAATGAGAGTAATGCCATGTCTCCTCATGATGTCGG  650

seq1  CTTAACAAATCCTTCTTGAGATTTTTAATAAGCCCAAGACAAAAGCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAATCCTTCTTGAGATTTTTAATAAGCCCAAGACAAAAGCTGAA  700

seq1  ACAGTTACTTCTGGCAAGAAGCATATAATATAGAAAAGCTAAACTA-TTG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGTTACTTCTGGCAAGAAGCATATAATATAGAAAAGCTAAACTATTTG  750

seq1  TAATATAGGTTA-TTGAGGCTATAAAAAGGTCTTAGAAAAAGAAAAAGGC  798
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAATATAGGTTATTTGAGGCTATAAAAAGGTCTTAGAAAAAGAAAAAGGC  800

seq1  TCTTTCTAGGGGCATAATAAAAATACTTCTAGAGTTCTGGGACTTTGAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGGGGCATAATAAAAATACTTCTAGAGTTCTGGGACTTTGAGT  850

seq1  TATGCTTTAAAAATTGGGCCACTAGCACTTGTTGCTGGGGACCAGCTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTAAAAATTGGGCCACTAGCACTTGTTGCTGGGGACCAGCTCCA  900

seq1  GTAGAATACAGGACCTGAGGAGGGTGGACATAACAGGTGACTCAAGGATT  948
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GTAGAATACAGGACCTGAAGAGGGTGGACATAACAGGTGACTCAA-GATT  949

seq1  GCTCCAACAGCAGTCTGAATCTTTCCTGAGCTTCTGAGAATGTATCGTCG  998
      ||||| |||||||||||||||||||||||||||||||| |||||||||| 
seq2  GCTCC-ACAGCAGTCTGAATCTTTCCTGAGCTTCTGAG-ATGTATCGTC-  996

seq1  GTGTCTGTACTCGAGAGACAAATTACGGAGACTGAAGCTGCGTTCCCAGG  1048
      ||||||||||||||||||  |||||| || ||||||||||| || ||| |
seq2  GTGTCTGTACTCGAGAGAACAATTAC-GAAACTGAAGCTGC-TTTCCATG  1044

seq1  GCCACAGGGTTCATTTATATTTCTTACAGCAATAATTACAACA-TTTCAT  1097
      |||||||||||||||| |||||||||| |||||| |  || || ||||||
seq2  GCCACAGGGTTCATTT-TATTTCTTAC-GCAATATTACCACCATTTTCAT  1092

seq1  ATTTGCATTTCAAAGGATTTCTAATACATAGCTATTCAAGGAGA-ATGAA  1146
      ||||||  ||||| | ||||||||| | |  |||||||| |||| || | 
seq2  ATTTGCCATTCAAGGAATTTCTAAT-CCTGCCTATTCAA-GAGAGATTAG  1140

seq1  ACAAAACATTTTTTAAGTGGTTATAGCCTAAAGTTCAATGGTCACATATC  1196
      || |||||||||   ||||   ||||||| |||||| | ||||||||   
seq2  ACCAAACATTTT---AGTG---ATAGCCT-AAGTTC-AGGGTCACAT---  1179

seq1  CTGTGCTAGCTAGACAAATT  1216
      | |||||||  |||||||||
seq2  CCGTGCTAGTCAGACAAATT  1199