BAC Information

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BAC

Clone NameB6Ng01-054M13
Chromosome16 (Build37)
Map Location 82,354,025 - 82,452,967
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260, EG545172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M13.bB6Ng01-054M13.g
ACCDH877435DH877436
length1,0491,146
definitionDH877435|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M13, 5' end.DH877436|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,354,025 - 82,355,079)(82,451,820 - 82,452,967)
sequence
gaattcaatatttacaatgtttacaatatttacaatatttattgtaaaac
cttccactatatttagtgtaatatttaaataaatgtgtactgttaactgt
atagattaaacaagtacagtatcctttataagaactaatacaaaaatcat
gtattttatgcaaatattttttaaatgttgtgtggaaaaaggatgttagg
ctgtttaatttttgtttgttttcctcagagaactggcctcctacctctag
agccatgattagaagcaacacaagcacacttaacagtctccacataatta
ctcagtggtttcttatcttgaaataaaattctaaaaatctttttacaaaa
cattttaaggttgataatgggagatgtcagaagtatctatctgtctatat
gtctgtctatctgtctgtctgtctatctatctatctatctatctatctat
ctatctatctatctatctatcacttacctatcattgaactatctatgtgt
ggctgtatatagtgtgattttgtgagtttctgaatgtgtgtgtatgtgtg
tgtaggtatgcatgttcagaaaaggacttttgctgatactattcaactta
ttcttctttatcatattctctctcgttacactaagatctcaaactcgtag
tacacatgtattttcacctcttcagtgttatattattagaacacaccacc
aaacttacttttttggttgttgatagtggcttagtttcatgggttcacag
gaaaaaactgatgttcttaaaacgttcaaggcaaaccttcacatattttt
taaaaaataagtaatttttttcaatttatcaaaaatataatgatggcatt
gggaataagataaatcttaagaaaattacatcaactttagaattactagt
ggccttgtagttaaaattatttggaccaatgtcaaaatgaaaattttttg
taatcttgttttaaaactgtaacagtttgtgatctgctttttattcctca
attaatttgcagcaagttttgcttgtttattggttaatgggaggggtgc
gaattctcattttcagacaattaatcaagccaaaataaattaagctaccc
cagagtgctttaagtctatagaagtaattaatcatctagtactttagttt
ccatttcttaattaattattgaatttgacctgttatccacaaattgaaat
ccagaaacttcttttgtcacatagtactattttctttaccagtctgagcc
tcttcttgaaagagtgctgggattgtcttcagcaaccctgtacatgctga
gtcattacaatggcttctgacacaggagacatctaacatccagaggaata
actattcttacaccgaactcatatgcatataaagatgtcgtgtaggcttt
tcctaagatgttccttgaataacattccttgctttgtcagtgcattaaac
tattaaatgaattaagaactatcaaaaggactgaatagagagaattgttt
attgattacaatagtgagtgaaagttatcatttaccatgattacttctat
gatgattcagggttcacttacatttacaggtttacattttgccacatact
atcttggtacgtttactagaaattatcccagaagttgacctgcattttca
agtaacagggccattgttctacaagtcacaagaatcaaataggtgaactg
agtgtataaaaggaaaacctatacttgtgattaaaatctttagaaacagt
atgcacttttaaagatagtttctcctaataatgaaaatcaaactgctatt
tctatattatcagaattccatgatccttcattttgaaatgagaaaatcat
tacattttggactttgttgtaatatgtatctgcttggtttacaacaatct
tatctgactcaatcttaaagacataatataaactatgcaaataaggacac
tgaggatcagctctgaataaagccattttagacataacagttcatattga
ccttagatttgatgggccctaaataaagttttgtagaatttcccagatta
acaaacctcatattagaacatttagaacataaagaacaaaacatggatgt
ggtcatcatgtccttgaatcaagtcatttcctctgtgtcatgactggctg
gctggttgcagaaacaatatggaaatagctgacaggctggaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82354025_82355079
seq2: B6Ng01-054M13.b_45_1093

seq1  GAATTCAATATTTACAATGTTTACAATATTTACAATATTTATTGTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTTACAATGTTTACAATATTTACAATATTTATTGTAAAAC  50

seq1  CTTCCACTATATTTAGTGTAATATTTAAATAAATGTGTACTGTTAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTATATTTAGTGTAATATTTAAATAAATGTGTACTGTTAACTGT  100

seq1  ATAGATTAAACAAGTACAGTATCCTTTATAAGAACTAATACAAAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAAACAAGTACAGTATCCTTTATAAGAACTAATACAAAAATCAT  150

seq1  GTATTTTATGCAAATATTTTTTAAATGTTGTGTGGAAAAAGGATGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATGCAAATATTTTTTAAATGTTGTGTGGAAAAAGGATGTTAGG  200

seq1  CTGTTTAATTTTTGTTTGTTTTCCTCAGAGAACTGGCCTCCTACCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATTTTTGTTTGTTTTCCTCAGAGAACTGGCCTCCTACCTCTAG  250

seq1  AGCCATGATTAGAAGCAACACAAGCACACTTAACAGTCTCCACATAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGATTAGAAGCAACACAAGCACACTTAACAGTCTCCACATAATTA  300

seq1  CTCAGTGGTTTCTTATCTTGAAATAAAATTCTAAAAATCTTTTTACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTTCTTATCTTGAAATAAAATTCTAAAAATCTTTTTACAAAA  350

seq1  CATTTTAAGGTTGATAATGGGAGATGTCAGAAGTATCTATCTGTCTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGGTTGATAATGGGAGATGTCAGAAGTATCTATCTGTCTATAT  400

seq1  GTCTGTCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTAT  450

seq1  CTATCTATCTATCTATCTATCACTTACCTATCATTGAACTATCTATGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCACTTACCTATCATTGAACTATCTATGTGT  500

seq1  GGCTGTATATAGTGTGATTTTGTGAGTTTCTGAATGTGTGTGTATGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATATAGTGTGATTTTGTGAGTTTCTGAATGTGTGTGTATGTGTG  550

seq1  TGTAGGTATGCATGTTCAGAAAAGGACTTTTGCTGATACTATTCAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTATGCATGTTCAGAAAAGGACTTTTGCTGATACTATTCAACTTA  600

seq1  TTCTTCTTTATCATATTCTCTCTCGTTACACTAAGATCTCAAACTCGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTATCATATTCTCTCTCGTTACACTAAGATCTCAAACTCGTAG  650

seq1  TACACATGTATTTTCACCTCTTCAGTGTTATATTATTAGAACACACCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTATTTTCACCTCTTCAGTGTTATATTATTAGAACACACCACC  700

seq1  AAACTTACTTTTTTGGTTGTTGATAGTGGCTTAGTTTCATGGGTTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTTTTTTGGTTGTTGATAGTGGCTTAGTTTCATGGGTTCACAG  750

seq1  GAAAAAACTGAGGTTCTTAAAACGTTCAAGGCAAACCTTCACATATTTTT  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTGATGTTCTTAAAACGTTCAAGGCAAACCTTCACATATTTTT  800

seq1  TAAAAAATAAGTAATTTTTTTCAATTTATCAAAAATATAATGATGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAGTAATTTTTTTCAATTTATCAAAAATATAATGATGGCATT  850

seq1  GGGAATAAGATAAATCTTAAGAAAATTACATCAACTTTAGAATTACTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAGATAAATCTTAAGAAAATTACATCAACTTTAGAATTACTAGT  900

seq1  GGCCTTGTAGTTAAAAATTATTTGGACCAATGTCAAAATGAAAA-TTTTT  949
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GGCCTTGTAGTT-AAAATTATTTGGACCAATGTCAAAATGAAAATTTTTT  949

seq1  GTAATTCTGTTTTAAAAACTGTAACAGTTTGTGATCTGCTTTTTATT-CT  998
      |||||  |||||| ||||||||||||||||||||||||||||||||| ||
seq2  GTAATCTTGTTTT-AAAACTGTAACAGTTTGTGATCTGCTTTTTATTCCT  998

seq1  CAATTAAATTTGCAGCAAAGTGTTTGCTTTGTTATATTGGTTTAATGTGA  1048
      ||||| |||||||||| |||| ||||| ||||| |||||| |||||| ||
seq2  CAATT-AATTTGCAGC-AAGT-TTTGC-TTGTT-TATTGG-TTAATGGGA  1042

seq1  GGAGTGC  1055
      || ||||
seq2  GGGGTGC  1049

seq1: chr16_82451820_82452967
seq2: B6Ng01-054M13.g_66_1211 (reverse)

seq1  TTTGTTCCAGGCCTGTCAGCTATTT-CATATTGTTTCTGCAACAAGCCAG  49
      ||||||||| ||||||||||||||| ||||||||||||||||| ||||||
seq2  TTTGTTCCA-GCCTGTCAGCTATTTCCATATTGTTTCTGCAACCAGCCAG  49

seq1  CCAGTCATTGACACAGA-GAAATGACTTGATTCAAGGACATGATGACCAC  98
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGTCA-TGACACAGAGGAAATGACTTGATTCAAGGACATGATGACCAC  98

seq1  ATACCATGTTTTGTTCTTTATGTTCTAAATGTTCT-ATATGAGGTTTGTT  147
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AT-CCATGTTTTGTTCTTTATGTTCTAAATGTTCTAATATGAGGTTTGTT  147

seq1  AATCTTGGGAAATTCTACAAAACTTTATTTAGGGCCCATCAAATCTAAGG  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATC-TGGGAAATTCTACAAAACTTTATTTAGGGCCCATCAAATCTAAGG  196

seq1  TCAATATGAACTGTTATGTCTAAAATGGCTTTATTCAGAGCTGATCCTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGAACTGTTATGTCTAAAATGGCTTTATTCAGAGCTGATCCTCA  246

seq1  GTGTTCCTTATTTGCATAGTTTATATTATGTCTTTAAGATTGAGTCAGAT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-TCCTTATTTGCATAGTTTATATTATGTCTTTAAGATTGAGTCAGAT  295

seq1  AAGATTGTTGTAAACCAAGCAGATACATATTACAACAAAGTCCAAAATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTTGTAAACCAAGCAGATACATATTACAACAAAGTCCAAAATGT  345

seq1  AATGATTTTCTCATTTCAAAATGAAGGATCATGGAATTCTGATAATATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTCTCATTTCAAAATGAAGGATCATGGAATTCTGATAATATAG  395

seq1  AAATAGCAGTTTGATTTTCATTATTAGGAGAAACTATCTTTAAAAGTGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGTTTGATTTTCATTATTAGGAGAAACTATCTTTAAAAGTGCA  445

seq1  TACTGTTTCTAAAGATTTTAATCACAAGTATAGGTTTTCCTTTTATACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTCTAAAGATTTTAATCACAAGTATAGGTTTTCCTTTTATACAC  495

seq1  TCAGTTCACCTATTTGATTCTTGTGACTTGTAGAACAATGGCCCTGTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCACCTATTTGATTCTTGTGACTTGTAGAACAATGGCCCTGTTAC  545

seq1  TTGAAAATGCAGGTCAACTTCTGGGATAATTTCTAGTAAACGTACCAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGCAGGTCAACTTCTGGGATAATTTCTAGTAAACGTACCAAGA  595

seq1  TAGTATGTGGCAAAATGTAAACCTGTAAATGTAAGTGAACCCTGAATCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTGGCAAAATGTAAACCTGTAAATGTAAGTGAACCCTGAATCAT  645

seq1  CATAGAAGTAATCATGGTAAATGATAACTTTCACTCACTATTGTAATCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGTAATCATGGTAAATGATAACTTTCACTCACTATTGTAATCAA  695

seq1  TAAACAATTCTCTCTATTCAGTCCTTTTGATAGTTCTTAATTCATTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCTCTCTATTCAGTCCTTTTGATAGTTCTTAATTCATTTAAT  745

seq1  AGTTTAATGCACTGACAAAGCAAGGAATGTTATTCAAGGAACATCTTAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGCACTGACAAAGCAAGGAATGTTATTCAAGGAACATCTTAGG  795

seq1  AAAAGCCTACACGACATCTTTATATGCATATGAGTTCGGTGTAAGAATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTACACGACATCTTTATATGCATATGAGTTCGGTGTAAGAATAG  845

seq1  TTATTCCTCTGGATGTTAGATGTCTCCTGTGTCAGAAGCCATTGTAATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTCTGGATGTTAGATGTCTCCTGTGTCAGAAGCCATTGTAATGA  895

seq1  CTCAGCATGTACAGGGTTGCTGAAGACAATCCCAGCACTCTTTCAAGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGTACAGGGTTGCTGAAGACAATCCCAGCACTCTTTCAAGAAG  945

seq1  AGGCTCAGACTGGTAAAGAAAATAGTACTATGTGACAAAAGAAGTTTCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGACTGGTAAAGAAAATAGTACTATGTGACAAAAGAAGTTTCTG  995

seq1  GATTTCAATTTGTGGATAACAGGTCAAATTCAATAATTAATTAAGAAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAATTTGTGGATAACAGGTCAAATTCAATAATTAATTAAGAAATG  1045

seq1  GAAACTAAAGTACTAGATGATTAATTACTTCTATAGACTTAAAGCACTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGTACTAGATGATTAATTACTTCTATAGACTTAAAGCACTCT  1095

seq1  GGGGTAGCTTAATTTATTTTGGCTTGATTAATTGTCTGAAAATGAGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGCTTAATTTATTTTGGCTTGATTAATTGTCTGAAAATGAGAATT  1145

seq1  C  1148
      |
seq2  C  1146