BAC Information

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BAC

Clone NameB6Ng01-055J03
Chromosome16 (Build37)
Map Location 80,727,874 - 80,920,971
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik, LOC621365
Downstream geneLOC100039724, Ncam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055J03.bB6Ng01-055J03.g
ACCDH877978DH877979
length1,1341,058
definitionDH877978|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J03, 5' end.DH877979|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,919,809 - 80,920,971)(80,727,874 - 80,728,936)
sequence
gaattccatagcctcttactttttagcctgactagttgaaagtctctgtg
ttaaccccaactactataaaaaaagaaagctttccggtgagagttgagag
cttctctggtctgaattcagtataaggaataactagaagccattttaaca
ctattcccacttagcaacctgtatcattttgtgtctttactttgtttcct
tatttgctcagttatataaatgaaataataatttacttttctctccttga
tctgggaaatatctgttcctaaattatttccttatgttttagtgaatatg
actaaagtctagcaaatcattcaaatattttatgtaatcaattcatcaca
ctttacaaaaagatataatataactaacctataatattactgtttgtatt
tgctgtgtatgtttttatgtatttgcttaatggtgaaatggttcaagcac
tgggatgttttaattttttcatttatattgagggaaactgacatatcagt
ttctttctttatttttacccagttatataaatgaaataaaatttactctt
ctctccttgatctgggaaatatctgttcctaaataatttccttgtttcag
tgaatatgactaaagtctagcaaatcattcaaatattttatataaacatt
ttttgcaatgtcattagctaaggataaaattgtcccaattatttgaactg
tatcataatttgacaaatttacctaacacattgacatgcaaagattgtaa
ataaacttctcttgactggtatcctgggttctccttgatggttcccccag
aatagaagaaaattttgctaataaaataattcagatcatgtctgtgataa
aaatggttttctgactttatatctgcctaggatataggaagctgagatgt
catcactcatacttaatcctcatacagtccagttaaactaataaagtaaa
tggtgttccataaatttatcacttgctttgtacaatctatattttatgct
taatgttcagtagaaaacatgagttcagagagattcataaattttttatc
atctacagtagcattcataaactggtagcagactctgtaggatccagaat
acatttaaatattcatatctatactaaaacattg
gaattctttttatttttatgttttttttccaagagaggactagttgtaga
tagtttcttcttcggggtgagaacccatgtctatttccagttctcagtgc
tgggaccacatctcttttgattttgtgcagatctgtgcatgtggcaatgg
ttctgtgagttcatatgtgcatcagtcctgctgtgtctagagggcactgt
ttcctttactcagtccattcgctctgccttaagcatcatcttccacagag
ctcctgattcctaagcttccctggagggtactaaaagactacactgaatg
aaactcctttattcttcttcctttttgtctttgtagcatgtcatcatcct
catgctatttattctttttatttgtttgttagtttgtttaatttccactc
tgaaaaaaaagtgatactcatctttctttgtgtattacttttaatcacta
caagaaaatagtttaaattcctgaatgagacttagatgtcatcaacaaaa
gcaagaatccacaaatagttttatagcacaataaaaggtttctgtgcagg
aaaaaaaaaggaagctctgaacaaagaaaagtacaacctacaggatagga
taaaagttgtcaaaatttaggggataggattaagattttcatatgtagaa
tatgtatacatatataatatatatgtaaaataaattattttttaaaagtc
aagtaatccagtgcaaacaaaaataaaacaagtgatctgaatacttttca
aaaatagaagaggtatacaataaatttatgaaaaactgattaataatttt
agccaagaggaaatcacaccactaacattatgatgatactccattccact
ccagtttaaaggactagtataaataaacaaaagtcaattaaataacacta
gctactgacccaaccatggatcataacaacacacatttagcaaatgtgtt
tcctgatatgtacccaaaggaattgaattcagttaaaagtagtgtatgta
cttatgctagtatgcagtacttctcaatagttagatattagccaccttag
atcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80919809_80920971
seq2: B6Ng01-055J03.b_45_1178 (reverse)

seq1  CAATGTTTTAGTAT-GATAATGAAATGTATTTTAAATGTATCTGTGGATC  49
      |||||||||||||| ||| |||||   || ||||||||||| | ||||||
seq2  CAATGTTTTAGTATAGAT-ATGAA---TA-TTTAAATGTAT-TCTGGATC  44

seq1  CTAACATGAAGTCCTGCCTTAACCAGGTTTTATGGAATGCTTTAACTGTA  99
      || |||   ||| ||||    |||||  ||||| |||||||   ||||||
seq2  CT-ACA--GAGT-CTGC---TACCAG--TTTAT-GAATGCT---ACTGTA  81

seq1  GATGATAGACATTTTTATTGGAATCTCTTCTGAACCTCATGTTTTCTACT  149
      ||||||| | |  |||||  ||||||| |||||| |||||||||||||| 
seq2  GATGATA-AAAAATTTAT--GAATCTC-TCTGAA-CTCATGTTTTCTAC-  125

seq1  TGAACATTAAGCATAAAATATAGATTTGTACAAAGCAAGTGATAAATTTA  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAACATTAAGCATAAAATATAGA-TTGTACAAAGCAAGTGATAAATTTA  174

seq1  TGGAACACCATTTTACTTTATTAGTTTAACTGGACTTGTATTGAGGATTA  249
      |||||||||| |||||||||||||||||||||||| |||| |||||||||
seq2  TGGAACACCA-TTTACTTTATTAGTTTAACTGGAC-TGTA-TGAGGATTA  221

seq1  AGTATGAGTGATGACATTCTCAGCTTCCTATATCCTAGGCAGATATAAAG  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTATGAGTGATGACA-TCTCAGCTTCCTATATCCTAGGCAGATATAAAG  270

seq1  TCAGAAAACCATTTTTATCACAGACATGATCTGAATTATTTTATTAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAACCATTTTTATCACAGACATGATCTGAATTATTTTATTAGCAA  320

seq1  AATTTTCTTCTATTCTGGGGGAACCATCAAGGAGAACCCAGGATACCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTCTATTCTGGGGGAACCATCAAGGAGAACCCAGGATACCAGT  370

seq1  CAAGAGAAGTTTATTTACAATCTTTGCATGTCAATGTGTTAGGTAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGTTTATTTACAATCTTTGCATGTCAATGTGTTAGGTAAATTT  420

seq1  GTCAAATTATGATACAGTTCAAATAATTGGGACAATTTTATCCTTAGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTATGATACAGTTCAAATAATTGGGACAATTTTATCCTTAGCTA  470

seq1  ATGACATTGCAAAAAATGTTTATATAAAATATTTGAATGATTTGCTAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTGCAAAAAATGTTTATATAAAATATTTGAATGATTTGCTAGAC  520

seq1  TTTAGTCATATTCACTGAAACAAGGAAATTATTTAGGAACAGATATTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCATATTCACTGAAACAAGGAAATTATTTAGGAACAGATATTTCC  570

seq1  CAGATCAAGGAGAGAAGAGTAAATTTTATTTCATTTATATAACTGGGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAGGAGAGAAGAGTAAATTTTATTTCATTTATATAACTGGGTAA  620

seq1  AAATAAAGAAAGAAACTGATATGTCAGTTTCCCTCAATATAAATGAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAAGAAACTGATATGTCAGTTTCCCTCAATATAAATGAAAAA  670

seq1  ATTAAAACATCCCAGTGCTTGAACCATTTCACCATTAAGCAAATACATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACATCCCAGTGCTTGAACCATTTCACCATTAAGCAAATACATAA  720

seq1  AAACATACACAGCAAATACAAACAGTAATATTATAGGTTAGTTATATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACACAGCAAATACAAACAGTAATATTATAGGTTAGTTATATTAT  770

seq1  ATCTTTTTGTAAAGTGTGATGAATTGATTACATAAAATATTTGAATGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTAAAGTGTGATGAATTGATTACATAAAATATTTGAATGATT  820

seq1  TGCTAGACTTTAGTCATATTCACTAAAACATAAGGAAATAATTTAGGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACTTTAGTCATATTCACTAAAACATAAGGAAATAATTTAGGAAC  870

seq1  AGATATTTCCCAGATCAAGGAGAGAAAAGTAAATTATTATTTCATTTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCCCAGATCAAGGAGAGAAAAGTAAATTATTATTTCATTTATA  920

seq1  TAACTGAGCAAATAAGGAAACAAAGTAAAGACACAAAATGATACAGGTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCAAATAAGGAAACAAAGTAAAGACACAAAATGATACAGGTTG  970

seq1  CTAAGTGGGAATAGTGTTAAAATGGCTTCTAGTTATTCCTTATACTGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGGAATAGTGTTAAAATGGCTTCTAGTTATTCCTTATACTGAAT  1020

seq1  TCAGACCAGAGAAGCTCTCAACTCTCACCGGAAAGCTTTCTTTTTTTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCAGAGAAGCTCTCAACTCTCACCGGAAAGCTTTCTTTTTTTATA  1070

seq1  GTAGTTGGGGTTAACACAGAGACTTTCAACTAGTCAGGCTAAAAAGTAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGGGTTAACACAGAGACTTTCAACTAGTCAGGCTAAAAAGTAAG  1120

seq1  AGGCTATGGAATTC  1163
      ||||||||||||||
seq2  AGGCTATGGAATTC  1134

seq1: chr16_80727874_80728936
seq2: B6Ng01-055J03.g_67_1124

seq1  GAATTCTTTTTATTTTTATGTTTTTTTTCCAAGAGAGGACTAGTTGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTTTATGTTTTTTTTCCAAGAGAGGACTAGTTGTAGA  50

seq1  TAGTTTCTTCTTCGGGGTGAGAACCCATGTCTATTTCCAGTTCTCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTCTTCGGGGTGAGAACCCATGTCTATTTCCAGTTCTCAGTGC  100

seq1  TGGGACCACATCTCTTTTGATTTTGTGCAGATCTGTGCATGTGGCAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCACATCTCTTTTGATTTTGTGCAGATCTGTGCATGTGGCAATGG  150

seq1  TTCTGTGAGTTCATATGTGCATCAGTCCTGCTGTGTCTAGAGGGCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGTTCATATGTGCATCAGTCCTGCTGTGTCTAGAGGGCACTGT  200

seq1  TTCCTTTACTCAGTCCATTCGCTCTGCCTTAAGCATCATCTTCCACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTACTCAGTCCATTCGCTCTGCCTTAAGCATCATCTTCCACAGAG  250

seq1  CTCCTGATTCCTAAGCTTCCCTGGAGGGTACTAAAAGACTACACTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATTCCTAAGCTTCCCTGGAGGGTACTAAAAGACTACACTGAATG  300

seq1  AAACTCCTTTATTCTTCTTCCTTTTTGTCTTTGTAGCATGTCATCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTTATTCTTCTTCCTTTTTGTCTTTGTAGCATGTCATCATCCT  350

seq1  CATGCTATTTATTCTTTTTATTTGTTTGTTAGTTTGTTTAATTTCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATTTATTCTTTTTATTTGTTTGTTAGTTTGTTTAATTTCCACTC  400

seq1  TGAAAAAAAAGTGATACTCATCTTTCTTTGTGTATTACTTTTAATCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAGTGATACTCATCTTTCTTTGTGTATTACTTTTAATCACTA  450

seq1  CAAGAAAATAGTTTAAATTCCTGAATGAGACTTAGATGTCATCAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATAGTTTAAATTCCTGAATGAGACTTAGATGTCATCAACAAAA  500

seq1  GCAAGAATCCACAAATAGTTTTATAGCACAATAAAAGGTTTCTGTGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATCCACAAATAGTTTTATAGCACAATAAAAGGTTTCTGTGCAGG  550

seq1  AAAAAAAAAGGAAGCTCTGAACAAAGAAAAGTACAACCTACAGGATAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGAAGCTCTGAACAAAGAAAAGTACAACCTACAGGATAGGA  600

seq1  TAAAAGTTGTCAAAATTTAGGGGATAGGATTAAGATTTTCATATGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTGTCAAAATTTAGGGGATAGGATTAAGATTTTCATATGTAGAA  650

seq1  TATGTATACATATATAATATATATGTAAAATAAATTATTTTTTAAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACATATATAATATATATGTAAAATAAATTATTTTTTAAAAGTC  700

seq1  AAGTAATCCAGTGCAAACAAAAATAAAACAAGTGATCTGAATACTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCCAGTGCAAACAAAAATAAAACAAGTGATCTGAATACTTTTCA  750

seq1  AAAATAGAAGAGGTATACAATAAATTTATGAAAAACTGATTAATAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAGAGGTATACAATAAATTTATGAAAAACTGATTAATAATTTT  800

seq1  AGCCAAGAGGAAATCACACCACTAACATTATGATGATACTCCATTCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGGAAATCACACCACTAACATTATGATGATACTCCATTCCACT  850

seq1  CCAGTTTAAAGGACTAGTATAAATAAACAAAAGTCAATTAAATAACACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTAAAGGACTAGTATAAATAAACAAAAGTCAATTAAATAACACTA  900

seq1  GCTACTGACCCAACCATGGATCATAACAACACACAATTTAGCAAATGTGT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTACTGACCCAACCATGGATCATAACAACACAC-ATTTAGCAAATGTGT  949

seq1  TTCCTGAATATGTACCCAAAGGAATTGAATTCAGTTAAAAGGTAGTGTAT  1000
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCCTG-ATATGTACCCAAAGGAATTGAATTCAGTTAAAA-GTAGTGTAT  997

seq1  GTAC-TATGCTTAGTATTGCAGTAC-TCTCAATAGTTAGATATATAGGCC  1048
      |||| ||||| ||||| |||||||| ||||||||||||||||| || |||
seq2  GTACTTATGC-TAGTA-TGCAGTACTTCTCAATAGTTAGATAT-TA-GCC  1043

seq1  ACC-TAGATACCTGTT  1063
      ||| ||||| ||||||
seq2  ACCTTAGAT-CCTGTT  1058