BAC Information

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BAC

Clone NameB6Ng01-056I12
Chromosome16 (Build37)
Map Location 47,699,886 - 47,761,231
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056I12.bB6Ng01-056I12.g
ACCDH878662DH878663
length9641,047
definitionDH878662|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I12, 5' end.DH878663|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,760,273 - 47,761,231)(47,699,886 - 47,700,938)
sequence
gaattcttaacaatgggaatggaagtgtctcttctatctactgtgaggac
ctttttccttccactgggttgcctcacacatctttgatatgtgggtttat
gcttagtctattgcaccttttatggtatgtttggttgacatcactggaat
gcttgctctcttgaagagaaataaaggaagagtagatctgggggacaggg
gagttgggaagactgggaggaggggaaagaagggacctgcagttaggatg
tattgtttgagagaagagtaagcctacacagaaaagaaaaacaaattaat
aaaagaggtttaggggtggaaaaagaagtgcctaagaagttgctgtcaca
gaagctgctgcgaatatcattatacacctagttcagttcatcactttaga
agacagtccagcaatcaaacaaataaataatgaactgttttatatatgga
ttcaatcttagaacttgacttcttaggcttttagattttttttaaatgga
ggttgacaaaatgaattattcactgagaacagaaaaataaagtaattaat
tatttggtttaccactggcatcacatatgataccaagactataactttgc
atttgctaagaaagttgtgcatgctgcttgtaatacagatgtatcatcag
attgtggtagtttagctatgcaatgagttaaaatggcatcattatgctca
gcaccactaaattttcagtctgcttcggagattttatagaagaagggaca
taagctccttgttgcaagagaagtatggattcttagttgactgttctttt
ctctagactccaacaggattcactagcatatggttgggccccccataaat
gcttgcttgaataaatgattgtaaaaacgtttaggatgtcagcggaatat
agagataccacgattgtaagcttacaaatggtaaattgtaatacactatt
aaaaataaataaag
gaattctctgccctaccttaaccacttgttgacatgtgaaaaggaacaga
aaggcttctaacactggagaaagttcaaggccagacatacctcataaagc
tgtaatgtgtcccgcagttctggttccgccccgtgaatgagggatctcct
tgcgccggtgtgatggtagttcccgggtttctcggcgccacttatcccga
gcttttgtccccaccggtaagaacacactcaggacaaccggaatcttctg
tggcaaaagctttattgcttacttctcaggaggaagacctcgaatacagg
aaactcagtccttttataacccacaaagagcagttggagacttgtcagct
cctgattagctgctcaccattagcccaggtgacatcacgggacaggcagg
gcacaaggcatggaaaaataccccagcacatgcgcagactacttgtttac
tagttagaacaccagatatcagcgccatcttgtaatggcgattgcaaggg
cggctcctcacagagaattaacattccaattggggccaggcagtggtggc
tcatgcctttaatcccaacacttgggaggcagaggcaggtggatttctga
gtttgaggtcagcctaatatacagagtgagtttcacgacagccagggcta
cacagggaaaccctatattgaaaatcaaacaaacaaacaaaaaacccaaa
aggcaaacgaccacctcttaggtaggcaagtccaccttaagctgtgctaa
ctaaacagaaagaagatactttgcagaattcacacttcctaatgaaaaag
tgaaacataaaaactaggcctttaggcccaggcttgagaatgtgaccttt
gtgactcaatgctccaaggcatgctaatcataaacagatagtaccattct
tcacccacctgcttctgggtttagggagtgttcgttcaaaaggaccaccc
tgacatcatgactgctatgcaatatgctatgtagtggctcatagaactgt
cttgagaaatacccgcacataccaggtatcttggactcttgggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47760273_47761231
seq2: B6Ng01-056I12.b_47_1010 (reverse)

seq1  CTTTAATTTATTTTAATAGTGTAATTAC-ATTTCACATTTGTAAGCTTTC  49
      ||||| ||  |||||||||||| ||||| ||||  ||||||||||||| |
seq2  CTTTATTTATTTTTAATAGTGT-ATTACAATTTACCATTTGTAAGCTTAC  49

seq1  AATCGT-GTATCTCTATATTCCACTGAACATCCTAAAACGTTTTTACATA  98
      |||||| ||||||||||||||| ||| ||||||| |||||||||||||  
seq2  AATCGTGGTATCTCTATATTCCGCTG-ACATCCT-AAACGTTTTTACAAT  97

seq1  CATTTATTC-AGCAAGCATTTATTGGGGGGCCAAACATATGCTAGTG-AT  146
      ||||||||| ||||||||||||| ||||| |||| |||||||||||| ||
seq2  CATTTATTCAAGCAAGCATTTATGGGGGGCCCAACCATATGCTAGTGAAT  147

seq1  TCTGTTGGAGTCTAGAG-AAAGAACAGTCAAC-AAGAATCCATACTTCTC  194
       |||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CCTGTTGGAGTCTAGAGAAAAGAACAGTCAACTAAGAATCCATACTTCTC  197

seq1  TTGCAACAAGG-GCTTATGTCCCTTTCTTCTATAAAATCTCCGAAGCAGA  243
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TTGCAACAAGGAGCTTATGTCCC-TTCTTCTATAAAATCTCCGAAGCAGA  246

seq1  CTG-AAATTTAGTGGTGCTGAGCAT-ATGATGCCATTTTAACTCATTGCA  291
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAAATTTAGTGGTGCTGAGCATAATGATGCCATTTTAACTCATTGCA  296

seq1  TAGCTAAACTACCACAATCTGATGATACATCTGTATTACAAGCAGCATGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAACTACCACAATCTGATGATACATCTGTATTACAAGCAGCATGC  346

seq1  ACAACTTTCTTAGCAAATGCAAAGTTATAGTCTTGGTATCATATGTGATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCTTAGCAAATGCAAAGTTATAGTCTTGGTATCATATGTGATG  396

seq1  CCAGTGGTAAACCAAATAATTAATTACTTTATTTTTCTGTTCTCAGTGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTAAACCAAATAATTAATTACTTTATTTTTCTGTTCTCAGTGAA  446

seq1  TAATTCATTTTGTCAACCTCCATTTAAAAAAAATCTAAAAGCCTAAGAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTTTGTCAACCTCCATTTAAAAAAAATCTAAAAGCCTAAGAAG  496

seq1  TCAAGTTCTAAGATTGAATCCATATATAAAACAGTTCATTATTTATTTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTAAGATTGAATCCATATATAAAACAGTTCATTATTTATTTGT  546

seq1  TTGATTGCTGGACTGTCTTCTAAAGTGATGAACTGAACTAGGTGTATAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTGGACTGTCTTCTAAAGTGATGAACTGAACTAGGTGTATAAT  596

seq1  GATATTCGCAGCAGCTTCTGTGACAGCAACTTCTTAGGCACTTCTTTTTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCGCAGCAGCTTCTGTGACAGCAACTTCTTAGGCACTTCTTTTTC  646

seq1  CACCCCTAAACCTCTTTTATTAATTTGTTTTTCTTTTCTGTGTAGGCTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAAACCTCTTTTATTAATTTGTTTTTCTTTTCTGTGTAGGCTTA  696

seq1  CTCTTCTCTCAAACAATACATCCTAACTGCAGGTCCCTTCTTTCCCCTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCAAACAATACATCCTAACTGCAGGTCCCTTCTTTCCCCTCC  746

seq1  TCCCAGTCTTCCCAACTCCCCTGTCCCCCAGATCTACTCTTCCTTTATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCTTCCCAACTCCCCTGTCCCCCAGATCTACTCTTCCTTTATTT  796

seq1  CTCTTCAAGAGAGCAAGCATTCCAGTGATGTCAACCAAACATACCATAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAGAGAGCAAGCATTCCAGTGATGTCAACCAAACATACCATAAA  846

seq1  AGGTGCAATAGACTAAGCATAAACCCACATATCAAAGATGTGTGAGGCAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAATAGACTAAGCATAAACCCACATATCAAAGATGTGTGAGGCAA  896

seq1  CCCAGTGGAAGGAAAAAGGTCCTCACAGTAGATAGAAGAGACACTTCCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGAAGGAAAAAGGTCCTCACAGTAGATAGAAGAGACACTTCCAT  946

seq1  TCCCATTGTTAAGAATTC  959
      ||||||||||||||||||
seq2  TCCCATTGTTAAGAATTC  964

seq1: chr16_47699886_47700938
seq2: B6Ng01-056I12.g_80_1114

seq1  CTACCTTAACCACTTGTTGACATGTGAAAAGGAACAGAAAGGCTTCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTAACCACTTGTTGACATGTGAAAAGGAACAGAAAGGCTTCTAAC  50

seq1  ACTGGAGAAAGTTCAAGGCCAGACATACCTCATAAAGCTGTAATGTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAAGTTCAAGGCCAGACATACCTCATAAAGCTGTAATGTGTCC  100

seq1  CGCAGTTCTGGTTCCGCCCCGTGAATGAGGGATCTCCTTGCGCCGGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTCTGGTTCCGCCCCGTGAATGAGGGATCTCCTTGCGCCGGTGTG  150

seq1  ATGGTAGTTCCCGGGTTTCTCGGCGCCACTTATCCCGAGCTTTTGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTCCCGGGTTTCTCGGCGCCACTTATCCCGAGCTTTTGTCCCC  200

seq1  ACCGGTAAGAACACACTCAGGACAACCGGAATCTTCTGTGGCAAAAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTAAGAACACACTCAGGACAACCGGAATCTTCTGTGGCAAAAGCTT  250

seq1  TATTGCTTACTTCTCAGGAGGAAGACCTCGAATACAGGAAACTCAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTACTTCTCAGGAGGAAGACCTCGAATACAGGAAACTCAGTCCT  300

seq1  TTTATAACCCACAAAGAGCAGTTGGAGACTTGTCAGCTCCTGATTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCCACAAAGAGCAGTTGGAGACTTGTCAGCTCCTGATTAGCTG  350

seq1  CTCACCATTAGCCCAGGTGACATCACGGGACAGGCAGGGCACAAGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATTAGCCCAGGTGACATCACGGGACAGGCAGGGCACAAGGCATG  400

seq1  GAAAAATACCCCAGCACATGCGCAGACTACTTGTTTACTAGTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCCCAGCACATGCGCAGACTACTTGTTTACTAGTTAGAACAC  450

seq1  CAGATATCAGCGCCATCTTGTAATGGCGATTGCAAGGGCGGCTCCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAGCGCCATCTTGTAATGGCGATTGCAAGGGCGGCTCCTCACA  500

seq1  GAGAATTAACATTCCAATTGGGGCCAGGCAGTGGTGGCTCATGCCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAACATTCCAATTGGGGCCAGGCAGTGGTGGCTCATGCCTTTAA  550

seq1  TCCCAACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGTCAG  600

seq1  CCTAATATACAGAGTGAGTTTCACGACAGCCAGGGCTACACAGGGAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATACAGAGTGAGTTTCACGACAGCCAGGGCTACACAGGGAAACC  650

seq1  CTATATTGAAAATCAAACAAACAAACAAAAAACCCAAAAGGCAAACGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGAAAATCAAACAAACAAACAAAAAACCCAAAAGGCAAACGACC  700

seq1  ACCTCTTAGGTAGGCAAGTCCACCTTAAGCTGTGCTAACTAAACAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAGGTAGGCAAGTCCACCTTAAGCTGTGCTAACTAAACAGAAAG  750

seq1  AAGATACTTTGCAGAATTCACACTTCCTAATGAAAAAGTGAAACATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTTGCAGAATTCACACTTCCTAATGAAAAAGTGAAACATAAAA  800

seq1  ACTAGGCCTTTAGGCCCAGGCTTGAGAATGTGACCTTTGTGACTCAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCTTTAGGCCCAGGCTTGAGAATGTGACCTTTGTGACTCAATGC  850

seq1  TCCAAGGCATGCTAATCATAAAACAGATAGTACCATTCTTCCACCCACCT  900
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TCCAAGGCATGCTAATCAT-AAACAGATAGTACCATTCTT-CACCCACCT  898

seq1  GCTTCCTGGGTTTAGGGAGTGTTCGTTCAAAAAGGACCACCCTGACCATT  950
      |||| ||||||||||||||||||||||| |||||||||||||||||   |
seq2  GCTT-CTGGGTTTAGGGAGTGTTCGTTC-AAAAGGACCACCCTGAC--AT  944

seq1  CATGGAACTGCTATGCAAATATGCTATTGTTAGTGGCTCATAGAAACTGT  1000
      ||||  |||||||||| ||||||||||   ||||||||||||| ||||||
seq2  CATG--ACTGCTATGC-AATATGCTAT--GTAGTGGCTCATAG-AACTGT  988

seq1  CTTGAGAAATAACCCGCACAATTACCAGGTATTCCTTGTGACTCTTGTGA  1050
      |||||||||| |||||||||  ||||||||||  |||| |||||||| ||
seq2  CTTGAGAAAT-ACCCGCACA--TACCAGGTAT--CTTG-GACTCTTGGGA  1032

seq1  CTT  1053
      |||
seq2  CTT  1035