BAC Information

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BAC

Clone NameB6Ng01-058G19
Chromosome16 (Build37)
Map Location 39,214,046 - 39,368,815
singlet/doubletdoublet
Overlap genenone
Upstream geneGsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058G19.bB6Ng01-058G19.g
ACCDH880006DH880007
length1,101142
definitionDH880006|Mus musculus domesticus DNA, BAC clone: B6Ng01-058G19, 5' end.DH880007|Mus musculus domesticus DNA, BAC clone: B6Ng01-058G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,367,701 - 39,368,815)(39,214,046 - 39,214,187)
sequence
gaattctcacttgtgtgctgatcaagagagtgcaatcaaccaccatcctg
aagtatcaataggaaggtgaacttaatgtaatgtaatgtagtcatatgtg
ggtggtataagtagaagactgtagactgcacttgcctctcctcaagccaa
cttattttagcacagctctaacaggggctaggataatggacattaccagc
atctcaactgaaatagaccccatgccatttggccatctgcttttctgtct
gttagctttcatggagagagcaattcattcggtgcagaaacaatactcat
ccactgtgcaattagataaatgccccgcctaactcatcctctggttgaat
aattctttctctaataatttatatcacagccacactgtttacaaagatgg
gtatataatgaacaatactttaaatggatggtaaaaagttaacaacctca
tttatgtgaacccaacgccccacacatgctaggctagtgctttgccagtg
agcctatttcctagcccacaaagtgatttcaaagggtagatttagtccaa
atatttgaggaggttgaccctttcaatgctatggttattgggaaattaca
atgctatttacagcaccactataacagccactataaaattcttttttatg
cagaatttttttttgtacctactcattcctacattggatagcctggtccc
aaatcctccaagcttgttgtgaaatcgtattttctgtgacatcacagtat
ttccactgagagagaagcacacccaggctatttgcttaatattgattgat
tttgtttcttcctatcagagtcttcaactagggagaaggaatcaaaatct
ctgaagaaatatggtcagattccagagtctgtcagtagtcaagggttaat
cagagacaggcataactgcggagtctagcccaattctggttgctataata
aactgaccaaagcaagtaagaaatgcagggttcatttaacatacacttcc
cgaatcacagacttttatgaaaagtcaggacatagcttggaagataagct
atgtggacttgcttctggttccttcacagctcatgctcagctaaatttct
t
caaagacacgtgagaactgcttgcaaatctttatggtaggaagcatggca
gcatgcaggcagatatagtgctagagaggtagttgaagttctatatctgg
ttcaggaggcatgagagggagagggagagggagagggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_39367701_39368815
seq2: B6Ng01-058G19.b_46_1146 (reverse)

seq1  AAGAAATCTAGCTGAGCATGAGCCTGTGAGTGAACCAGGAAGCAGCTTCC  50
      ||||||| |||||||||||||| ||||||  |||||| ||||||   |||
seq2  AAGAAATTTAGCTGAGCATGAG-CTGTGAAGGAACCA-GAAGCA-AGTCC  47

seq1  ACCATAGCTTATACTTCAAGCTTATGTCCTGACTTTTTTCATTAAGAGTC  100
      | ||||||||||  | ||||| |||||||||||  |||||| ||| ||||
seq2  A-CATAGCTTATCTTCCAAGC-TATGTCCTGAC--TTTTCA-TAAAAGTC  92

seq1  TGTGATTCTGGAAGTGTATGTTAAATGAACCCTGCATTCTCCTAACTTGC  150
      |||||||| ||||||||||||||||||||||||||||  | || ||||||
seq2  TGTGATTCGGGAAGTGTATGTTAAATGAACCCTGCAT--TTCTTACTTGC  140

seq1  TTTTGGTCAGTTTTATTATAGCAACCAGAATTGGGCTAGAACTCCGCAGT  200
       ||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  -TTTGGTCAG-TTTATTATAGCAACCAGAATTGGGCTAG-ACTCCGCAGT  187

seq1  TATGCCTGTCTCTGATTAACCCTTGACCTACTGACAGACTCTGGAATCTG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGCCTGTCTCTGATTAACCCTTGA-CTACTGACAGACTCTGGAATCTG  236

seq1  ACCATATTTCTTCAGAGATTTTGATTCCTTCTCCCTAGTTGAAGACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTCTTCAGAGATTTTGATTCCTTCTCCCTAGTTGAAGACTCTG  286

seq1  ATAGGAAGAAACAAAATCAATCAATATTAAGCAAATAGCCTGGGTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAAACAAAATCAATCAATATTAAGCAAATAGCCTGGGTGTGCT  336

seq1  TCTCTCTCAGTGGAAATACTGTGATGTCACAGAAAATACGATTTCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCAGTGGAAATACTGTGATGTCACAGAAAATACGATTTCACAAC  386

seq1  AAGCTTGGAGGATTTGGGACCAGGCTATCCAATGTAGGAATGAGTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGAGGATTTGGGACCAGGCTATCCAATGTAGGAATGAGTAGGTA  436

seq1  CAAAAAAAAATTCTGCATAAAAAAGAATTTTATAGTGGCTGTTATAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAATTCTGCATAAAAAAGAATTTTATAGTGGCTGTTATAGTGG  486

seq1  TGCTGTAAATAGCATTGTAATTTCCCAATAACCATAGCATTGAAAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAATAGCATTGTAATTTCCCAATAACCATAGCATTGAAAGGGTC  536

seq1  AACCTCCTCAAATATTTGGACTAAATCTACCCTTTGAAATCACTTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTCAAATATTTGGACTAAATCTACCCTTTGAAATCACTTTGTGG  586

seq1  GCTAGGAAATAGGCTCACTGGCAAAGCACTAGCCTAGCATGTGTGGGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAATAGGCTCACTGGCAAAGCACTAGCCTAGCATGTGTGGGGCG  636

seq1  TTGGGTTCACATAAATGAGGTTGTTAACTTTTTACCATCCATTTAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCACATAAATGAGGTTGTTAACTTTTTACCATCCATTTAAAGTA  686

seq1  TTGTTCATTATATACCCATCTTTGTAAACAGTGTGGCTGTGATATAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTATATACCCATCTTTGTAAACAGTGTGGCTGTGATATAAATT  736

seq1  ATTAGAGAAAGAATTATTCAACCAGAGGATGAGTTAGGCGGGGCATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAAAGAATTATTCAACCAGAGGATGAGTTAGGCGGGGCATTTAT  786

seq1  CTAATTGCACAGTGGATGAGTATTGTTTCTGCACCGAATGAATTGCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCACAGTGGATGAGTATTGTTTCTGCACCGAATGAATTGCTCTC  836

seq1  TCCATGAAAGCTAACAGACAGAAAAGCAGATGGCCAAATGGCATGGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAAGCTAACAGACAGAAAAGCAGATGGCCAAATGGCATGGGGTC  886

seq1  TATTTCAGTTGAGATGCTGGTAATGTCCATTATCCTAGCCCCTGTTAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTTGAGATGCTGGTAATGTCCATTATCCTAGCCCCTGTTAGAG  936

seq1  CTGTGCTAAAATAAGTTGGCTTGAGGAGAGGCAAGTGCAGTCTACAGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAAAATAAGTTGGCTTGAGGAGAGGCAAGTGCAGTCTACAGTCT  986

seq1  TCTACTTATACCACCCACATATGACTACATTACATTACATTAAGTTCACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATACCACCCACATATGACTACATTACATTACATTAAGTTCACC  1036

seq1  TTCCTATTGATACTTCAGGATGGTGGTTGATTGCACTCTCTTGATCAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGATACTTCAGGATGGTGGTTGATTGCACTCTCTTGATCAGCA  1086

seq1  CACAAGTGAGAATTC  1115
      |||||||||||||||
seq2  CACAAGTGAGAATTC  1101

seq1: chr16_39214046_39214187
seq2: B6Ng01-058G19.g_73_214

seq1  CAAAGACACGTGAGAACTGCTTGCAAATCTTTATGGTAGGAAGCATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACGTGAGAACTGCTTGCAAATCTTTATGGTAGGAAGCATGGCA  50

seq1  GCATGCAGGCAGATATAGTGCTAGAGAGGTAGTTGAAGTTCTATATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGGCAGATATAGTGCTAGAGAGGTAGTTGAAGTTCTATATCTGG  100

seq1  TTCAGGAGGCATGAGAGGGAGAGGGAGAGGGAGAGGGAGAGG  142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGGCATGAGAGGGAGAGGGAGAGGGAGAGGGAGAGG  142