BAC Information

Click to search

BAC

Clone NameB6Ng01-059A16
Chromosome11 (Build37)16 (Build37)
Map Location 80,402,379 - 80,403,31523,273,545 - 23,274,617
singlet/doubletsingletsinglet
Overlap geneMyo1d
Upstream geneRab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A16.bB6Ng01-059A16.g
ACCDH880454DH880455
length9301,142
definitionDH880454|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A16, 5' end.DH880455|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,402,379 - 80,403,315)(23,273,545 - 23,274,617)
sequence
gaattcctgctgatggcttgctgatggccctgtatttctaagtttactac
aaacacccttcttcatgcttgcttagattatgtcctcttagactctttta
atcccaaagggacaccaaggcaaatttgatatgcttccgaagagccttcc
tcctggtgcgttgagtatattgaagcagctgctttccattaacagcagtt
attataaagtgttcgttaaggtgagagtactgcaaatagctcctctcacc
actatgctgttctgttctgactctgcagcagctttatctttgaccccctg
tggaaatgaccgaaactctaaacagctgccttgaaatcgctagaaaaagc
aggaaactaggattttttctcctggggtagggattttaactttgagtaca
agaaacaaggtgaagtcttatctagttctgagtcttcggtccagctttgc
tatcattttgcaaaaataaatatgaaataaaagtagtgttcccataccat
aacagtgtgaagcgggattcacctgtatgtgttgaatttttcatttctgt
gtcgatagagctaagttaagccatctacagatcttatgctgttagacttg
atgactttcacacctacctgattcttgttttaagatctgagttgctgaaa
tagaaggtaaatatttgttcatatgaagaatatttctgaacagcttctgt
ctgctttgaggttctttgtttttcccccttgttttagattaactcattat
atatcctaaaaagacctgtggctttttttttctcaactcaaatgattgtg
tgagattgtataacagggttttcaagtatattctgttccacctcatgtgg
gttttttttttctacacatgagtccataaagatgaaggaaattagtccac
gtatttttagtttctgtgcgaggcgtcctg
gaattcttcctcagcttcctgagtgctggagttataagctcccccttttc
ccaaacagacttttttttttttttgtttttttcgagacagggtcctagct
ctcaggtgatcctggatctttggcaaggaaatgtctcaggatgctctttc
cttgggcttcttttagctataatgcagtgttcttattctatggaaagctt
ttgctgagttttctcaagtctgcaattggaaacatggtctagggtaggaa
atggtagctctctccggatcctggtggggaagtcccctaagtatcttctg
taatgaataacacagaagatgagccttgaaaactttgaacaaagatgagt
caaaaaggccctgtccgtcagagtcactgatgagagcaaagtgcttgaag
acccatgccatggcttcaaacagaggctcagaacctacacacatcaggac
agacctcaggggacctgaagcaacggctgacacctggaagtgacctattc
actgcagcctctgactgtcaaagcgacgacgaggccagaagcctgctatt
acttatggaactggagctcttgtgcaagcaaaccaaaatcctgtttaatg
caaacactggcctgcaaacaaagatgtcaccaacataaacctcctgctat
cctttcacagagggtcttctatctcgacctgtcagatgtgtttgcctgaa
tggatccagtgccaccaggctgctcgaatgagatgtattagccctcattt
agcacactgctccacccagctataccggggcgtacctcgtggtgggggaa
aggcctgcttggcttgtgtgcacagaatacaggctgcagaactagcttcc
tgatcatcacccccagatcgtggtagcctgattctaagtgataggtttac
ggaagacagtcattctactcacaataggtaggagatttagacattcgaat
gacaactgacatcagactctacatcccctttgatcaagtcctaggacgag
gactttttaagagactttcaccataagttaatttcatctaaaagatggct
tcattggggccttcatgagcaatacttgcaggaaagaactaccgagcaat
ttctagacctggatactattattggcagggcgcctttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80402379_80403315
seq2: B6Ng01-059A16.b_43_972 (reverse)

seq1  CAGGACGCCTCGCACAGAAACTAAAAAATAAGTGGAAATAATTTCCTTCA  50
      |||||||||||||||||||||| ||||||| |||| | ||||||||||||
seq2  CAGGACGCCTCGCACAGAAACT-AAAAATACGTGG-ACTAATTTCCTTCA  48

seq1  TCTTTTATGGAATCATTTGGAGAAAAAAAAAAACCCACATGAGGTGGAAC  100
      || |||||||| |||| || || |||||||||||||||||||||||||||
seq2  TC-TTTATGGACTCATGTGTAG-AAAAAAAAAACCCACATGAGGTGGAAC  96

seq1  AGAATATACTTTAAAAACCCTGTTATACAATCTCACAAAATCATTTGAGT  150
      ||||||||| || |||||||||||||||||||||||| ||||||||||||
seq2  AGAATATAC-TTGAAAACCCTGTTATACAATCTCACACAATCATTTGAGT  145

seq1  TGAGAAAAAAAAAGCCACAGGTCCTTTTTAGGATATATAATGAGTTAATC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAGAAAAAAAAAGCCACAGGT-CTTTTTAGGATATATAATGAGTTAATC  194

seq1  TAAAAACAAGGGGGAAAAACAAAGAACCTCAAAGCAGACAGAAGCTGTTC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAACAAGGGGGAAAAACAAAGAACCTCAAAGCAGACAGAAGCTGTTC  243

seq1  AGAAATATTCTTCATATGAACAAATATTTACCTTCTATTTCAGCAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCTTCATATGAACAAATATTTACCTTCTATTTCAGCAACTCA  293

seq1  GATCTTAAAACAAGAATCAGGTAGGTGTGAAAGTCATCAAGTCTAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAAACAAGAATCAGGTAGGTGTGAAAGTCATCAAGTCTAACAGC  343

seq1  ATAAGATCTGTAGATGGCTTAACTTAGCTCTATCGACACAGAAATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATCTGTAGATGGCTTAACTTAGCTCTATCGACACAGAAATGAAAA  393

seq1  ATTCAACACATACAGGTGAATCCCGCTTCACACTGTTATGGTATGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACACATACAGGTGAATCCCGCTTCACACTGTTATGGTATGGGAAC  443

seq1  ACTACTTTTATTTCATATTTATTTTTGCAAAATGATAGCAAAGCTGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTATTTCATATTTATTTTTGCAAAATGATAGCAAAGCTGGACC  493

seq1  GAAGACTCAGAACTAGATAAGACTTCACCTTGTTTCTTGTACTCAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCAGAACTAGATAAGACTTCACCTTGTTTCTTGTACTCAAAGTT  543

seq1  AAAATCCCTACCCCAGGAGAAAAAATCCTAGTTTCCTGCTTTCTCTAGCG  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATCCCTACCCCAGGAGAAAAAATCCTAGTTTCCTGCTTTTTCTAGCG  593

seq1  ACTTCAAGGCAGCTGTTTAGAGTTTCGGTCATTTCCACAGGGGGTCAAAG  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGGCAGCTGTTTAGAGTTTCGGTCATTTCCACAGGGGGTCAAAG  643

seq1  ATAAAGCTGCTGCAGAGTCAGAACAGAACAGCATAGTGGTGAGAGGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTGCTGCAGAGTCAGAACAGAACAGCATAGTGGTGAGAGGAGCT  693

seq1  ATTTGCAGTACTCTCACCTTAACGAACACTTTATAATAACTGCTGTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTACTCTCACCTTAACGAACACTTTATAATAACTGCTGTTAAT  743

seq1  GGAAAGCAGCTGCTTCAATATACTCAACGCACCAGGAGGAAGGCTCTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGCTGCTTCAATATACTCAACGCACCAGGAGGAAGGCTCTTCG  793

seq1  GAAGCATATCAAATTTGCCTTGGTGTCCCTTTGGGATTAAAAGAGTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATATCAAATTTGCCTTGGTGTCCCTTTGGGATTAAAAGAGTCTAA  843

seq1  GAGGACATAATCTAAGCAAGCATGAAGAAGGGTGTTTGTACTAAACTTAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGGACATAATCTAAGCAAGCATGAAGAAGGGTGTTTGTAGTAAACTTAG  893

seq1  AAATACAGGGCCATCAGCAAGCCATCAGCAGGAATTC  937
      |||||||||||||||||||||||||||||||||||||
seq2  AAATACAGGGCCATCAGCAAGCCATCAGCAGGAATTC  930

seq1: chr16_23273545_23274617
seq2: B6Ng01-059A16.g_159_1207 (reverse)

seq1  GGAAGAAGGGCGCCCTGGCAATAATAGTATCCCAGCTTTTAGGAATACTG  50
      ||||||| ||||||||| ||||||||||||||  |  | ||| |||  ||
seq2  GGAAGAAAGGCGCCCTGCCAATAATAGTATCCAGG--TCTAGAAAT--TG  46

seq1  CTCAGTAGCTTCTTTCCTGTAAAGGTATGGCTCATGGAAGGGCCCCATGT  100
      ||| |||| |||||||||| ||  |||| |||||| ||||| ||| ||| 
seq2  CTCGGTAG-TTCTTTCCTGCAA--GTATTGCTCAT-GAAGGCCCCAATG-  91

seq1  AAGCCAGTCTGTTATGATTGAAAATAAACTTTATGGTGAAAGTCTCTTAA  150
      |||||| ||| ||| || ||||| |||   ||||||||||||||||||||
seq2  AAGCCA-TCTTTTA-GA-TGAAATTAA--CTTATGGTGAAAGTCTCTTAA  136

seq1  AAAGTCATCCGTCCTAGGACTTGATCTAAAGGGGATGTAGAGTCTGGATT  200
      |||||| | ||||||||||||||||| |||||||||||||||||||   |
seq2  AAAGTCCT-CGTCCTAGGACTTGATC-AAAGGGGATGTAGAGTCTG--AT  182

seq1  GTCAAGTTGTCATTCTGAATGTCTAAATCTCCTACCTATTTGTGAGTAGA  250
      ||| ||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GTC-AGTTGTCATTC-GAATGTCTAAATCTCCTACCTA-TTGTGAGTAGA  229

seq1  ATGAACTGTCTTCCGTAAACCCTATCACTTAGGATCAGGCTACCACGATC  300
      ||| ||||||||||||||| |||||||||||| |||||||||||||||||
seq2  ATG-ACTGTCTTCCGTAAA-CCTATCACTTAGAATCAGGCTACCACGATC  277

seq1  TGGGGGTGATGATCAGGAAGCTAGTTCTGCAGCCTGTATTCTGTGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGATGATCAGGAAGCTAGTTCTGCAGCCTGTATTCTGTGCACAC  327

seq1  AGGCCAAAGCAGGCCTTTCCCCCACCACGAGGTACGCCCCGGTATAGCTG  400
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCC-AAGCAGGCCTTTCCCCCACCACGAGGTACGCCCCGGTATAGCTG  376

seq1  GGTGGAGCAGTGTGCTAAATGAGGGCTAATAACATCTCATTCGAGCAGCC  450
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTGGAGCAGTGTGCTAAATGAGGGCTAAT-ACATCTCATTCGAGCAGCC  425

seq1  TGGTGGCACTGGATCCATTCAGGCAAACACATCTGACAGGTCGAGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACTGGATCCATTCAGGCAAACACATCTGACAGGTCGAGATAGA  475

seq1  AGACCCTCTGTG-AAGGATAGCAGGAGGTTTATGTTGGTGACATCTTTGT  549
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCTGTGAAAGGATAGCAGGAGGTTTATGTTGGTGACATCTTTGT  525

seq1  TTGCAGGCCAGTGTTTGCATTAAACAGGATTTTGGTTTGCTTGCACAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCCAGTGTTTGCATTAAACAGGATTTTGGTTTGCTTGCACAAGA  575

seq1  GCTCCAGTTCCATAAGTAATAGCAGGCTTCTGGCCTCGTCGTCGCTTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTCCATAAGTAATAGCAGGCTTCTGGCCTCGTCGTCGCTTTGA  625

seq1  CAGTCAGAGGCTGCAGTGAATAGGTCACTTCCAGGTGTCAGCCGTTGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAGGCTGCAGTGAATAGGTCACTTCCAGGTGTCAGCCGTTGCTT  675

seq1  CAGGTCCCCTGAGGTCTGTCCTGATGTGTGTAGGTTCTGAGCCTCTGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCCTGAGGTCTGTCCTGATGTGTGTAGGTTCTGAGCCTCTGTTT  725

seq1  GAAGCCATGGCATGGGTCTTCAAGCACTTTGCTCTCATCAGTGACTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATGGCATGGGTCTTCAAGCACTTTGCTCTCATCAGTGACTCTGA  775

seq1  CGGACAGGGCCTTTTTGACTCATCTTTGTTCAAAGTTTTCAAGGCTCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAGGGCCTTTTTGACTCATCTTTGTTCAAAGTTTTCAAGGCTCATC  825

seq1  TTCTGTGTTATTCATTACAGAAGATACTTAGGGGACTTCCCCACCAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTATTCATTACAGAAGATACTTAGGGGACTTCCCCACCAGGAT  875

seq1  CCGGAGAGAGCTACCATTTCCTACCCTAGACCATGTTTCCAATTGCAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGAGAGCTACCATTTCCTACCCTAGACCATGTTTCCAATTGCAGAC  925

seq1  TTGAGAAAACTCAGCAAAAGCTTTCCATAGAATAAGAACACTGCATTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAACTCAGCAAAAGCTTTCCATAGAATAAGAACACTGCATTATA  975

seq1  GCTAAAAGAAGCCCAAGGAAAGAGCATCCTGAGACATTTCCTTGCCAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGAAGCCCAAGGAAAGAGCATCCTGAGACATTTCCTTGCCAAAG  1025

seq1  ATCCAGGATCACCTGAGAGCTAGG  1073
      ||||||||||||||||||||||||
seq2  ATCCAGGATCACCTGAGAGCTAGG  1049