BAC Information

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BAC

Clone NameB6Ng01-060E02
Chromosome16 (Build37)
Map Location 46,121,269 - 46,224,282
singlet/doubletdoublet
Overlap geneAL024110
Upstream geneCcdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96
Downstream genePvrl3, LOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060E02.bB6Ng01-060E02.g
ACCDH881280DH881281
length1,136973
definitionDH881280|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E02, 5' end.DH881281|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,121,269 - 46,122,429)(46,223,561 - 46,224,282)
sequence
gaattcttacttggagtacttagactcttactgcattaaaatgaggaaac
ttttaaaaagagagcaggagaatgcctcattaagacgagagagtgtgatt
tttcagaactagaggttcactgttcacagaatccctgccttttgctaagg
tggtttattagaggcacttgggtgtcggttggtccaatctgtcttagcta
tttatttgattcatggttcatgattctaatacctaggaatttctgtggcc
tgaacccatcagatttttactaattttcccttgggatccatctagactct
tagagaagacacttctcagatggctgtgccacacacgttgaatgcatctg
ttattctgaagtggcaagacccaagtgacagcccctccatggctgcctgc
ttgcagcaggtggcagcaacagcctgcagaccagaatggctatcccaggt
ggtgggaatggcccccacagcttttctgtcttggtaatattttctaaagg
ccctttcagcagggggataggcattctctgtacttaaaaataactcttct
atgaagccatatcaatctttcctgttatcctctctgctcaccaaatccca
aaccgcacagcctttcttctgcctgatattccagcctgctgcatatgaaa
cagaagctgtcagtttcacaatgtgaagagcaaccttgaacttcttgaac
ttctgagacaaatgcgattatttacaaaggggagctagaacacacacaca
ttcatttctgctagagaagcaagccaggactgtgtttggacaacgttttt
aaacagtctatgcaaattactcaattcgaagaagatgctttgagaagtgg
aaaggtgagcaggaggtaaacccccccccctttttttgtggttctacagt
gatcaattcaaatataactagattttttttttttttacctactcacataa
attacttgaagtgtaggctttgtgagcagtcccagtgtgctgaaaaacag
cactcagattcggttaataaaaaattttattgtgactttcaggatcacta
agacatacatctctagtcattttaattatgaaatcatgggcctttcttct
tcgaaactgaattctgctgactaatttcaggaaaga
gaattcattaataaagtactcaaatcttagttttctttgtactaagcatg
aaagaacaaaactctttattaatccaaaagcaactttaggttcacagaaa
aatagacaacctacagagatttttcatatctctgtgtccccacctacaca
acacctctgtttacatgcctcacaatttcttatctaattaagtcagtata
ttatcactgcaaatccattttatttctctctctctctctctctcccatca
ataataatcctctgtctacctatctatctttacattaatagaacccaatt
ccttgtaaaagaaactctaagagctacctgtctagatgaccacataagag
tacacaaggcaaatgccttttaggagctagagtagtccccaaccagattt
caaatcttctgccaccttactttgaacttcccagccaccagaactatgaa
ataagtttttgtttctatgataacttaatgaagccatttgaatagactaa
cacaggaatgcactcacaatgttggtaccatacagaccatatctactatt
ctaaacatcctttatgtgccctctatctgcccctctttcaatccatagca
cacactactaattgatagtctctccagttatgtctttttcagaatgtcat
atattcaaaatcatacaacatcctcagattagattttccttcacttaata
cagtgaacttgagttcctccttttcttctagtggtttgttggctcatttc
ctcttatctctgaatagcattctatggtctacttgtatcagtttttaaaa
catgttcacttacttaaaggacagtgtaactgcttccacgttttgaaaaa
aagataagtgattataaacactgatgcctaagtgttagcttgtagtaagt
gctttgataacttactctagatatatgataagagcacagtggtttttaat
aacaaatttcaatctgcctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46121269_46122429
seq2: B6Ng01-060E02.b_49_1184

seq1  GAATTCTTACTTGGAGTACTTAGACTCTTACTGCATTAAAATGAGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTGGAGTACTTAGACTCTTACTGCATTAAAATGAGGAAAC  50

seq1  TTTTAAAAAGAGAGCAGGAGAATGCCTCATTAAGACGAGAGAGTGTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGAGAGCAGGAGAATGCCTCATTAAGACGAGAGAGTGTGATT  100

seq1  TTTCAGAACTAGAGGTTCACTGTTCACAGAATCCCTGCCTTTTGCTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAACTAGAGGTTCACTGTTCACAGAATCCCTGCCTTTTGCTAAGG  150

seq1  TGGTTTATTAGAGGCACTTGGGTGTCGGTTGGTCCAATCTGTCTTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATTAGAGGCACTTGGGTGTCGGTTGGTCCAATCTGTCTTAGCTA  200

seq1  TTTATTTGATTCATGGTTCATGATTCTAATACCTAGGAATTTCTGTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATTCATGGTTCATGATTCTAATACCTAGGAATTTCTGTGGCC  250

seq1  TGAACCCATCAGATTTTTACTAATTTTCCCTTGGGATCCATCTAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCATCAGATTTTTACTAATTTTCCCTTGGGATCCATCTAGACTCT  300

seq1  TAGAGAAGACACTTCTCAGATGGCTGTGCCACACACGTTGAATGCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGACACTTCTCAGATGGCTGTGCCACACACGTTGAATGCATCTG  350

seq1  TTATTCTGAAGTGGCAAGACCCAAGTGACAGCCCCTCCATGGCTGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGAAGTGGCAAGACCCAAGTGACAGCCCCTCCATGGCTGCCTGC  400

seq1  TTGCAGCAGGTGGCAGCAACAGCCTGCAGACCAGAATGGCTATCCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGGTGGCAGCAACAGCCTGCAGACCAGAATGGCTATCCCAGGT  450

seq1  GGTGGGAATGGCCCCCACAGCTTTTCTGTCTTGGTAATATTTTCTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAATGGCCCCCACAGCTTTTCTGTCTTGGTAATATTTTCTAAAGG  500

seq1  CCCTTTCAGCAGGGGGATAGGCATTCTCTGTACTTAAAAATAACTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAGCAGGGGGATAGGCATTCTCTGTACTTAAAAATAACTCTTCT  550

seq1  ATGAAGCCATATCAATCTTTCCTGTTATCCTCTCTGCTCACCAAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCATATCAATCTTTCCTGTTATCCTCTCTGCTCACCAAATCCCA  600

seq1  AACCGCACAGCCTTTCTTCTGCCTGATATTCCAGCCTGCTGCATATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCACAGCCTTTCTTCTGCCTGATATTCCAGCCTGCTGCATATGAAA  650

seq1  CAGAAGCTGTCAGTTTCACAATGTGAAGAGCAACCTTGAACTTCTTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGTCAGTTTCACAATGTGAAGAGCAACCTTGAACTTCTTGAAC  700

seq1  TTCTGAGACAAATGCGATTATTTACAAAGGGGAGCTAGAACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACAAATGCGATTATTTACAAAGGGGAGCTAGAACACACACACA  750

seq1  TTCATTTCTGCTAGAGAAGCAAGCCAGGACTGTGTTTGGACAACGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTGCTAGAGAAGCAAGCCAGGACTGTGTTTGGACAACGTTTTT  800

seq1  AAACAGTCTATGCAAATTACTCAATTCGAAGAAGATGCTTTGAGAAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTATGCAAATTACTCAATTCGAAGAAGATGCTTTGAGAAGTGG  850

seq1  AAAGGTGAGCAGGAGGTAAACCCCCCCCCCCTTTTTTTGTGGTTCTACAG  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGGTGAGCAGGAGGTAAA-CCCCCCCCCCTTTTTTTGTGGTTCTACAG  899

seq1  TGATCAATTCAAATATAACTAGATTTTTTTTTTTTTTTACCTACTCACAT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATCAATTCAAATATAACTAGA-TTTTTTTTTTTTTTACCTACTCACAT  948

seq1  AAATTACTTGAAGTGTTAGGCTTTGTGAGCAGTTCCCAGTGTGCTTGAAA  1000
      ||||||||||||||| |||||||||||||||| ||||||||||| |||||
seq2  AAATTACTTGAAGTG-TAGGCTTTGTGAGCAG-TCCCAGTGTGC-TGAAA  995

seq1  ACACAGCACTCAAGGATTCGGTTAATTAAAAAATATTTATTGTGACCTTT  1050
      | ||||||||||  ||||||||||| |||||||| |||||||||| ||||
seq2  A-ACAGCACTCA--GATTCGGTTAA-TAAAAAAT-TTTATTGTGA-CTTT  1039

seq1  CAGGGATCACTAAAGACATACATCTCTAGGTCATTTTAAATATAATGGAA  1100
      || |||||||| |||||||||||||||| |||||||||| |||       
seq2  CA-GGATCACT-AAGACATACATCTCTA-GTCATTTTAATTAT------G  1080

seq1  AAATCATGGG-CTTTCTTCTCCAGAAACCTGACATTCTGCTTGACATTAT  1149
      |||||||||| ||||||||| | |||| |||| ||||||| ||||  || 
seq2  AAATCATGGGCCTTTCTTCTTC-GAAA-CTGA-ATTCTGC-TGAC--TAA  1124

seq1  TCTCAGGAAAGA  1161
      | ||||||||||
seq2  TTTCAGGAAAGA  1136

seq1: chr16_46223561_46224282
seq2: B6Ng01-060E02.g_67_788 (reverse)

seq1  AAGGAGGAACTCAAGTTCACTGTATTAAGTGAAGGAAAATCTAATCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAACTCAAGTTCACTGTATTAAGTGAAGGAAAATCTAATCTGAG  50

seq1  GATGTTGTATGATTTTGAATATATGACATTCTGAAAAAGACATAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTATGATTTTGAATATATGACATTCTGAAAAAGACATAACTGGA  100

seq1  GAGACTATCAATTAGTAGTGTGTGCTATGGATTGAAAGAGGGGCAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATCAATTAGTAGTGTGTGCTATGGATTGAAAGAGGGGCAGATAG  150

seq1  AGGGCACATAAAGGATGTTTAGAATAGTAGATATGGTCTGTATGGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACATAAAGGATGTTTAGAATAGTAGATATGGTCTGTATGGTACCA  200

seq1  ACATTGTGAGTGCATTCCTGTGTTAGTCTATTCAAATGGCTTCATTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAGTGCATTCCTGTGTTAGTCTATTCAAATGGCTTCATTAAGT  250

seq1  TATCATAGAAACAAAAACTTATTTCATAGTTCTGGTGGCTGGGAAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGAAACAAAAACTTATTTCATAGTTCTGGTGGCTGGGAAGTTCA  300

seq1  AAGTAAGGTGGCAGAAGATTTGAAATCTGGTTGGGGACTACTCTAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTGGCAGAAGATTTGAAATCTGGTTGGGGACTACTCTAGCTCC  350

seq1  TAAAAGGCATTTGCCTTGTGTACTCTTATGTGGTCATCTAGACAGGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCATTTGCCTTGTGTACTCTTATGTGGTCATCTAGACAGGTAGC  400

seq1  TCTTAGAGTTTCTTTTACAAGGAATTGGGTTCTATTAATGTAAAGATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTTTCTTTTACAAGGAATTGGGTTCTATTAATGTAAAGATAGA  450

seq1  TAGGTAGACAGAGGATTATTATTGATGGGAGAGAGAGAGAGAGAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGACAGAGGATTATTATTGATGGGAGAGAGAGAGAGAGAGAGAAA  500

seq1  TAAAATGGATTTGCAGTGATAATATACTGACTTAATTAGATAAGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATTTGCAGTGATAATATACTGACTTAATTAGATAAGAAATTG  550

seq1  TGAGGCATGTAAACAGAGGTGTTGTGTAGGTGGGGACACAGAGATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTAAACAGAGGTGTTGTGTAGGTGGGGACACAGAGATATGAA  600

seq1  AAATCTCTGTAGGTTGTCTATTTTTCTGTGAACCTAAAGTTGCTTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTGTAGGTTGTCTATTTTTCTGTGAACCTAAAGTTGCTTTTGGA  650

seq1  TTAATAAAGAGTTTTGTTCTTTCATGCTTAGTACAAAGAAAACTAAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGAGTTTTGTTCTTTCATGCTTAGTACAAAGAAAACTAAGATT  700

seq1  TGAGTACTTTATTAATGAATTC  722
      ||||||||||||||||||||||
seq2  TGAGTACTTTATTAATGAATTC  722