BAC Information

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BAC

Clone NameB6Ng01-061C11
Chromosome16 (Build37)
Map Location 87,572,173 - 87,702,170
singlet/doubletdoublet
Overlap geneORF63, Bach1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486
Downstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C11.bB6Ng01-061C11.g
ACCDH881909DH881910
length1,1621,089
definitionDH881909|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C11, 5' end.DH881910|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,572,173 - 87,573,360)(87,701,054 - 87,702,170)
sequence
gaattctctttgtctctgtgtctctctgtctctgtctctctttgtgtgtg
tctgaaaaatcattttttctcctaattggaatatcaatgatctttcttag
cttatggctcggtctgtagaggattcattgcattacccagatttccacat
gattatcgagataatttcctgttagagaatcgctaagtccatttaaatgg
tataaccccaattacagcttataattctatttgaaatatattagaaatta
atctacttagttattttacttaattattctccagtgtgaggttttcctcg
tttattgatctttaaggagataggccctcagggtttggattttctccttc
agtgtggtcatggcattaccgcttcctgagcagagagggtgtcgccagcc
tcccagcagaacaagtcgatttgtgtttctgcagtgagagatgagactga
gtttgttattaacacttaccagttgtctcgactttcggctaggaatgcct
ctgtctagaggagctgatgcttataatctttactctccaggatatgagtg
ccaaaaaaaaaaatcaaccaaacaaactccccaaacacaagatggtgagg
gagcaccttcctgttcccgtgcttccaggagcacacacatctaagccagg
ctacagcagagactcctgcgctaaaagcacagagactgcttcatggacaa
taggaaccatcctttacctgggccaggtcttccttacagttggatgtgag
ctcttctatcctgtaatactctttttttatcattattttatttatgttta
tgtatatgagtacactgtagctgtcttcagacacacacaccagaagaggg
catcagatcccattacagatggttgtgagccaccgtgtggttgctgggat
ttgaactcaggacctctggaagagcagtcagtgctcttaaccgctgagcc
atctctccgggccatctgtatactctctgctgagtgtcatgatctgctat
aggaaaaaaacgccagtttatttttagagagctctgtgggagtacgacaa
ggaatgtaacatggcgctctccaattcctctgtgggacctaaagggaact
ctctctgcaatctgatccatgcaggaaggccattcttcaatgtgactcta
gttcttgcaaaa
gaattccacttcccaaggattatttaaatgcagttttaacaataatcaca
aggatataaaaagggggaacccttagccgggcgtggtggcgcacgccttt
aatcccagcactcaggaggcagaggcaggcggatttctgagttcgaggcc
agcctggtctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaacaaaacaa
aaacaaaaaaaggggggacccacaaacttccaaagggtaagagaatttta
ccttaaattttaaaagattttgttatgaatattacattccaaatgtataa
attatcaaaccttctaatcactacacacattcaaccaaccacctttgggg
cttgcctacaaatccaataaaatgttatcaaaatagaactatgtaatttt
tttatttctatcactcactttaagaatgtagtaagaaattcccatctttt
attctttacaatataaaaactacatatgaagtgaaagtcaaatactaaga
atattttgaaattactacagctctcggaaaagatcagaaattaaacacac
acagaaatctgttgcagacttggaatgatggcaatagcagtggaaagtaa
attttatattcctcaacagaaaaaaggataaagtgtgcataaccacatta
tctagtatgcaaatattgatgtcaccctcctcgtttaacttcctgatgtg
gatattttcatgttagatcaagcatcctgtaatctacctgaaatctccta
acatctgaaagagacaacactgataaccctaaatctaaaacagcacacca
accgctctctctgctacagaggtttgaaaggaatgaccatcaataataat
ttggtatcgttcttgcggctcatgcaactctgagaggtaaaggcactcgt
cacaagcttgacgctgaggtcaggtcccagaactccaggatacgaaagaa
tcaaaatgcaactgtctctgatctctgccaattcaacccaacattaataa
atctgtttaaaaatcatcgtctttagtcaaggaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87572173_87573360
seq2: B6Ng01-061C11.b_42_1203

seq1  GAATTCTCTTTGTCTCTGTGTCTCTCTGTCTCTGTCTCTCTTTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTCTCTGTGTCTCTCTGTCTCTGTCTCTCTTTGTGTGTG  50

seq1  TCTGAAAAATCATTTTTTCTCCTAATTGGAATATCAATGATCTTTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAATCATTTTTTCTCCTAATTGGAATATCAATGATCTTTCTTAG  100

seq1  CTTATGGCTCGGTCTGTAGAGGATTCATTGCATTACCCAGATTTCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGCTCGGTCTGTAGAGGATTCATTGCATTACCCAGATTTCCACAT  150

seq1  GATTATCGAGATAATTTCCTGTTAGAGAATCGCTAAGTCCATTTAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCGAGATAATTTCCTGTTAGAGAATCGCTAAGTCCATTTAAATGG  200

seq1  TATAACCCCAATTACAGCTTATAATTCTATTTGAAATATATTAGAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCCAATTACAGCTTATAATTCTATTTGAAATATATTAGAAATTA  250

seq1  ATCTACTTAGTTATTTTACTTAATTATTCTCCAGTGTGAGGTTTTCCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTAGTTATTTTACTTAATTATTCTCCAGTGTGAGGTTTTCCTCG  300

seq1  TTTATTGATCTTTAAGGAGATAGGCCCTCAGGGTTTGGATTTTCTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGATCTTTAAGGAGATAGGCCCTCAGGGTTTGGATTTTCTCCTTC  350

seq1  AGTGTGGTCATGGCATTACCGCTTCCTGAGCAGAGAGGGTGTCGCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTCATGGCATTACCGCTTCCTGAGCAGAGAGGGTGTCGCCAGCC  400

seq1  TCCCAGCAGAACAAGTCGATTTGTGTTTCTGCAGTGAGAGATGAGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAGAACAAGTCGATTTGTGTTTCTGCAGTGAGAGATGAGACTGA  450

seq1  GTTTGTTATTAACACTTACCAGTTGTCTCGACTTTCGGCTAGGAATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTATTAACACTTACCAGTTGTCTCGACTTTCGGCTAGGAATGCCT  500

seq1  CTGTCTAGAGGAGCTGATGCTTATAATCTTTACTCTCCAGGATATGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGAGGAGCTGATGCTTATAATCTTTACTCTCCAGGATATGAGTG  550

seq1  CCAAAAAAAAAAATCAACCAAACAAACTCCCCAAACACAAGATGGTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAATCAACCAAACAAACTCCCCAAACACAAGATGGTGAGG  600

seq1  GAGCACCTTCCTGTTCCCGTGCTTCCAGGAGCACACACATCTAAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTTCCTGTTCCCGTGCTTCCAGGAGCACACACATCTAAGCCAGG  650

seq1  CTACAGCAGAGACTCCTGCGCTAAAAGCACAGAGACTGCTTCATGGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGAGACTCCTGCGCTAAAAGCACAGAGACTGCTTCATGGACAA  700

seq1  TAGGAACCATCCTTTACCTGGGCCAGGTCTTCCTTACAGTTGGATGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACCATCCTTTACCTGGGCCAGGTCTTCCTTACAGTTGGATGTGAG  750

seq1  CTCTTCTATCCTGTAATACTCTTTTTTTATCATTA-TTTATTTATGTTTA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCTTCTATCCTGTAATACTCTTTTTTTATCATTATTTTATTTATGTTTA  800

seq1  TGTATATGAGTACACTGTAGCTGTCTTCAGACACACACACCAGAAGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGAGTACACTGTAGCTGTCTTCAGACACACACACCAGAAGAGGG  850

seq1  CATCAGATCCCATTACAGATGGTTGTGAGCCACCGTGTGGTTGCTGGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCCATTACAGATGGTTGTGAGCCACCGTGTGGTTGCTGGGAT  900

seq1  TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC  950

seq1  ATCTCTCCGGGCCATCTGTAATACTCTCTGCTGAGTGTCATGATCTGCTA  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCTCTCCGGGCCATCTGT-ATACTCTCTGCTGAGTGTCATGATCTGCTA  999

seq1  TAGGAAAATAAACGCCAGTTTATTTTATAGAAGAGCCCTGTGGGAGTCAC  1049
      |||||||| ||||||||||||||||| ||| ||||| |||||||||| ||
seq2  TAGGAAAA-AAACGCCAGTTTATTTT-TAG-AGAGCTCTGTGGGAGT-AC  1045

seq1  GACAAGGAGATGTAAACCATGGCGGCTCTCACAGTTCCCTCTGTGGCACC  1099
      |||||||| ||||||  |||||| |||||| || || ||||||||| | |
seq2  GACAAGGA-ATGTAA--CATGGC-GCTCTC-CAATT-CCTCTGTGGGA-C  1088

seq1  CTAGAGTGACCTCCCCCCACTGCATACTCTGACTCCATCGCAGGCAAGGG  1149
      ||| || || ||   | | ||||  | ||||| ||||| |||||  | ||
seq2  CTAAAGGGAACT---CTCTCTGC--AATCTGA-TCCAT-GCAGG--AAGG  1129

seq1  CCATTTCCCTACATGTGACCTCACTAGGTTCTTGCAAAA  1188
      |||||  | |  ||||||   | ||| ||||||||||||
seq2  CCATT--CTTCAATGTGA---CTCTA-GTTCTTGCAAAA  1162

seq1: chr16_87701054_87702170
seq2: B6Ng01-061C11.g_70_1158 (reverse)

seq1  TCTTCTTCCCTTTGACTAAAAGAACGATGATTTTTAAAAACATGTATTTA  50
      |||||||||  |||||||||   ||||||||||||||| | || |||| |
seq2  TCTTCTTCC--TTGACTAAA--GACGATGATTTTTAAACAGATTTATTAA  46

seq1  TTTTATTGTTTTGTGTTTGTATTTGTGCAGAGATCAGAGGACAGTTTGCA  100
      | ||          | ||| |||   |||||||||||| ||||| |||||
seq2  TGTT---------GGGTTGAATT--GGCAGAGATCAGA-GACAG-TTGCA  83

seq1  TTTGTGGTTCTCTCCGTTAATCCTGTGGGTTCTGGGGCCTGGACCTCAGG  150
      ||| || |||| | |||  |||||| | |||||||| ||| |||||||| 
seq2  TTT-TGATTCT-TTCGT--ATCCTG-GAGTTCTGGGACCT-GACCTCAG-  126

seq1  CCGTCAAGCTTGGTGGCGAGTGCCTTTACCCTCTCAAGGGTTGCATGGGC  200
       |||||||||| ||| |||||||||||| |||||| || |||||||| ||
seq2  -CGTCAAGCTT-GTGACGAGTGCCTTTA-CCTCTC-AGAGTTGCATGAGC  172

seq1  CGCAAGAACGATACCAAATTATTATTGATGGTCATTCCTTTCAAACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGAACGATACCAAATTATTATTGATGGTCATTCCTTTCAAACCTCT  222

seq1  GTAGCAG-GGGAGCGGTTGGTGTGCTGTTTTAGATTTAGGGTTATCAGTG  299
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGAGAGCGGTTGGTGTGCTGTTTTAGATTTAGGGTTATCAGTG  272

seq1  TTGTCTCTTTCAGATGTTAGGAGATTTCAGGTAGATTACAGGATGCTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTTCAGATGTTAGGAGATTTCAGGTAGATTACAGGATGCTTGA  322

seq1  TCTAACATGAAAATATCCACATCAGGAAGTTAAACGAGGAGGGTGACATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATGAAAATATCCACATCAGGAAGTTAAACGAGGAGGGTGACATC  372

seq1  AATATTTGCATACTAGATAATGTGGTTATGCACACTTTATCCTTTTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGCATACTAGATAATGTGGTTATGCACACTTTATCCTTTTTTCT  422

seq1  GTTGAGGAATATAAAATTTACTTTCCACTGCTATTGCCATCATTCCAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAATATAAAATTTACTTTCCACTGCTATTGCCATCATTCCAAGT  472

seq1  CTGCAACAGATTTCTGTGTGTGTTTAATTTCTGATCTTTTCCGAGAGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACAGATTTCTGTGTGTGTTTAATTTCTGATCTTTTCCGAGAGCTG  522

seq1  TAGTAATTTCAAAATATTCTTAGTATTTGACTTTCACTTCATATGTAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTTCAAAATATTCTTAGTATTTGACTTTCACTTCATATGTAGTT  572

seq1  TTTATATTGTAAAGAATAAAAGATGGGAATTTCTTACTACATTCTTAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGTAAAGAATAAAAGATGGGAATTTCTTACTACATTCTTAAAG  622

seq1  TGAGTGATAGAAATAAAAAAATTACATAGTTCTATTTTGATAACATTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATAGAAATAAAAAAATTACATAGTTCTATTTTGATAACATTTTA  672

seq1  TTGGATTTGTAGGCAAGCCCCAAAGGTGGTTGGTTGAATGTGTGTAGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTGTAGGCAAGCCCCAAAGGTGGTTGGTTGAATGTGTGTAGTGA  722

seq1  TTAGAAGGTTTGATAATTTATACATTTGGAATGTAATATTCATAACAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTTTGATAATTTATACATTTGGAATGTAATATTCATAACAAAA  772

seq1  TCTTTTAAAATTTAAGGTAAAATTCTCTTACCCTTTGGAAGTTTGTGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATTTAAGGTAAAATTCTCTTACCCTTTGGAAGTTTGTGGGT  822

seq1  CCCCCCTTTTTTTGTTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTTTTTT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCCCCTTTTTTTGTTTTTGTTTTGTTTTG-TTTTTTTTTTTTTTTTTTT  871

seq1  TTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  921

seq1  CACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC  971

seq1  CTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTAAGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTAAGGGT  1021

seq1  TCCCCCTTTTTATATCCTTGTGATTATTGTTAAAACTGCATTTAAATAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTTTATATCCTTGTGATTATTGTTAAAACTGCATTTAAATAAT  1071

seq1  CCTTGGGAAGTGGAATTC  1117
      ||||||||||||||||||
seq2  CCTTGGGAAGTGGAATTC  1089