BAC Information

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BAC

Clone NameB6Ng01-064F15
Chromosome16 (Build37)
Map Location 39,503,203 - 39,680,106
singlet/doubletdoublet
Overlap genenone
Upstream gene4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064F15.bB6Ng01-064F15.g
ACCDH884165DH884166
length1,077714
definitionDH884165|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F15, 5' end.DH884166|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,503,203 - 39,504,299)(39,679,393 - 39,680,106)
sequence
gaattcaatatcactaaataatttggcatatgggactggggcagaaaaca
ctcttgttagttccagtgtgatagattttttaggtagagcagagcagcat
gcactgtatgaataggcatgaaagtggaagatctaaactcttatcctaag
aaaactttatgtcatagactactcatgcagacttgtactcatcaacctcc
aaattgtaagtgtccatttctttggtcagccacaatggctggctaatgct
ggtatcagctcaatatgagagcttccatctgttttctggcacgaagtcat
atttgctccttctagtgagtctgtgctaatcaagggccaactctgcttgt
tgtcaaattcgactattattttattttctgtttttgtaatttttattaaa
taataccaaatatttttattaaaatacatataaatatgaaaacaaatgac
cataacatctaaattaaatagttggggaacacacggcatagagaggcatc
acttgtcagagagtgaatgtaacaaatgttagaagaaaaatataaatata
tatgaagatttcataattagggtgctttaaaaacacttatcatcatgtcc
ttttttatattataggggaatagggaaaaactaaaatagagaagaatata
taactcctgtgcttgttgcttatgaagattttacccacaatgaagatttt
tacccacaatactaaaagtgaatgttcagtgtgtttttttctttctctat
gtcaactaatatattccattttttttttttgtaatttaagtaatacatat
tcatcattgttttaacatttgtcatttacaatgactttccccattttgtg
gggtcatacttagagatgcttggtacatgaatggtttccaggatggacac
accgagacagtgaggaatgaagaaagacagacacatgacacagagactat
aataaagttgggattggtggactaaaccctctgtggggaatcatgtacct
ctagtagctcattgtgttattgttagatgaatagggaggtgaattatttg
cacctgaacaaggagtgaggtatatgt
gaattctattgcctgatattataatttagtagtttgatttcattctgata
cttatttatgaatttatttctccatttaatacttcttttaagttttgatt
atagtgcagttatataatcttccctttcctttaatccctccaaactctct
catataatcttcatttttcattagttgttaatacacacacacacacacac
attccacacatattcctaaatacatgaatataacctgttctggtgatggg
ttcttttttttttttttttttttaagttcctcctctattttttttttcaa
aatatttactatctggtcttttaataaatgtttcatatatctcatatgtt
taaaaagtcacaaaatatttaacattttccattacattcccaagagaaca
aataccattttaggaaatctttttttttttttttttaaattcatagtgaa
agcactgaaatgcaatgattccccaaaaaactgtggatcattaactaagt
attaggtcctaggttataaaaatgtagcatgtagggcctagtatagcaca
tgcctttagttcaagtattcagaggcagaggtagatggatcttgtgagtt
cacagccatccctatttactcaagaccagtcagtactacacaaggattcc
tttctcagatgaatgtaaaaagagaggtgcaggggaaggaaaaagtgggg
aggggagagaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_39503203_39504299
seq2: B6Ng01-064F15.b_46_1122

seq1  GAATTCAATATCACTAAATAATTTGGCATATGGGACTGGGGCAGAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCACTAAATAATTTGGCATATGGGACTGGGGCAGAAAACA  50

seq1  CTCTTGTTAGTTCCAGTGTGATAGATTTTTTAGGTAGAGCAGAGCAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTAGTTCCAGTGTGATAGATTTTTTAGGTAGAGCAGAGCAGCAT  100

seq1  GCACTGTATGAATAGGCATGAAAGTGGAAGATCTAAACTCTTATCCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTATGAATAGGCATGAAAGTGGAAGATCTAAACTCTTATCCTAAG  150

seq1  AAAACTTTATGTCATAGACTACTCATGCAGACTTGTACTCATCAACCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTATGTCATAGACTACTCATGCAGACTTGTACTCATCAACCTCC  200

seq1  AAATTGTAAGTGTCCATTTCTTTGGTCAGCCACAATGGCTGGCTAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAAGTGTCCATTTCTTTGGTCAGCCACAATGGCTGGCTAATGCT  250

seq1  GGTATCAGCTCAATATGAGAGCTTCCATCTGTTTTCTGGCACGAAGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGCTCAATATGAGAGCTTCCATCTGTTTTCTGGCACGAAGTCAT  300

seq1  ATTTGCTCCTTCTAGTGAGTCTGTGCTAATCAAGGGCCAACTCTGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCCTTCTAGTGAGTCTGTGCTAATCAAGGGCCAACTCTGCTTGT  350

seq1  TGTCAAATTCGACTATTATTTTATTTTCTGTTTTTGTAATTTTTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTCGACTATTATTTTATTTTCTGTTTTTGTAATTTTTATTAAA  400

seq1  TAATACCAAATATTTTTATTAAAATACATATAAATATGAAAACAAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCAAATATTTTTATTAAAATACATATAAATATGAAAACAAATGAC  450

seq1  CATAACATCTAAATTAAATAGTTGGGGAACACACGGCATAGAGAGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCTAAATTAAATAGTTGGGGAACACACGGCATAGAGAGGCATC  500

seq1  ACTTGTCAGAGAGTGAATGTAACAAATGTTAGAAGAAAAATATAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAGAGAGTGAATGTAACAAATGTTAGAAGAAAAATATAAATATA  550

seq1  TATGAAGATTTCATAATTAGGGTGCTTTAAAAACACTTATCATCATGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATTTCATAATTAGGGTGCTTTAAAAACACTTATCATCATGTCC  600

seq1  TTTTTTATATTATAGGGGAATAGGGAAAAACTAAAATAGAGAAGAATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATATTATAGGGGAATAGGGAAAAACTAAAATAGAGAAGAATATA  650

seq1  TAACTCCTGTGCTTGTTGCTTATGAAGATTTTACCCACAATGAAGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTGTGCTTGTTGCTTATGAAGATTTTACCCACAATGAAGATTTT  700

seq1  TACCCACAATACTAAAAGTGAATGTTCAGTGTGTTTTTTTCTTTCTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAATACTAAAAGTGAATGTTCAGTGTGTTTTTTTCTTTCTCTAT  750

seq1  GTCAACTAATATATTCCATTTTTTTTTTTTGTAATTTAAGTAATACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTAATATATTCCATTTTTTTTTTTTGTAATTTAAGTAATACATAT  800

seq1  TCATCATTGTTTTAACATTTGTCATTTACAATGACTTTCCCCATTTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGTTTTAACATTTGTCATTTACAATGACTTTCCCCATTTTGTG  850

seq1  GGGTCATACTTAGAGATGCTTGGTACATGAATGGTTTCCAGGGATGGACA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGTCATACTTAGAGATGCTTGGTACATGAATGGTTTCCA-GGATGGACA  899

seq1  CAACCGAGACAGTGAGGGAATGAAGAAAGACAGACACATGGACACAGAGA  950
      | ||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  C-ACCGAGACAGTGA-GGAATGAAGAAAGACAGACACAT-GACACAGAGA  946

seq1  CATATAATAAAGTTGGGATTGGGTGGACTAAACCCTCTGTTGGGGAAATC  1000
      | |||||||||||||||||| |||||||||||||||||||  ||| ||||
seq2  C-TATAATAAAGTTGGGATT-GGTGGACTAAACCCTCTGT--GGGGAATC  992

seq1  ATTGTACCTC-AGTAGCTCATTGTGTTTATTGTATAGAATTGAATAGGGA  1049
      | |||||||| |||||||||||||| ||||||| ||||  ||||||||||
seq2  A-TGTACCTCTAGTAGCTCATTGTG-TTATTGT-TAGA--TGAATAGGGA  1037

seq1  GGTAGAATTATTTGCACAACTGAACAAGAGAGTGAGGTTATTATATGT  1097
      ||| |||||||||||||  ||||||||| ||||||||    |||||||
seq2  GGT-GAATTATTTGCAC--CTGAACAAG-GAGTGAGG----TATATGT  1077

seq1: chr16_39679393_39680106
seq2: B6Ng01-064F15.g_68_781 (reverse)

seq1  CCCTTCTCTCCCCTCCCCACTTTTTCCTTCCCCTGCACCTCTCTTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTCCCCTCCCCACTTTTTCCTTCCCCTGCACCTCTCTTTTTAC  50

seq1  ATTCATCTGAGAAAGGAATCCTTGTGTAGTACTGACTGGTCTTGAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGAGAAAGGAATCCTTGTGTAGTACTGACTGGTCTTGAGTAAA  100

seq1  TAGGGATGGCTGTGAACTCACAAGATCCATCTACCTCTGCCTCTGAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGGCTGTGAACTCACAAGATCCATCTACCTCTGCCTCTGAATAC  150

seq1  TTGAACTAAAGGCATGTGCTATACTAGGCCCTACATGCTACATTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTAAAGGCATGTGCTATACTAGGCCCTACATGCTACATTTTTATA  200

seq1  ACCTAGGACCTAATACTTAGTTAATGATCCACAGTTTTTTGGGGAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGACCTAATACTTAGTTAATGATCCACAGTTTTTTGGGGAATCAT  250

seq1  TGCATTTCAGTGCTTTCACTATGAATTTAAAAAAAAAAAAAAAAAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCAGTGCTTTCACTATGAATTTAAAAAAAAAAAAAAAAAGATTT  300

seq1  CCTAAAATGGTATTTGTTCTCTTGGGAATGTAATGGAAAATGTTAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATGGTATTTGTTCTCTTGGGAATGTAATGGAAAATGTTAAATAT  350

seq1  TTTGTGACTTTTTAAACATATGAGATATATGAAACATTTATTAAAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTTTTTAAACATATGAGATATATGAAACATTTATTAAAAGACC  400

seq1  AGATAGTAAATATTTTGAAAAAAAAAATAGAGGAGGAACTTAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTAAATATTTTGAAAAAAAAAATAGAGGAGGAACTTAAAAAAAAA  450

seq1  AAAAAAAAAAAGAACCCATCACCAGAACAGGTTATATTCATGTATTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAACCCATCACCAGAACAGGTTATATTCATGTATTTAGG  500

seq1  AATATGTGTGGAATGTGTGTGTGTGTGTGTGTATTAACAACTAATGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTGGAATGTGTGTGTGTGTGTGTGTATTAACAACTAATGAAAA  550

seq1  ATGAAGATTATATGAGAGAGTTTGGAGGGATTAAAGGAAAGGGAAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATTATATGAGAGAGTTTGGAGGGATTAAAGGAAAGGGAAGATTA  600

seq1  TATAACTGCACTATAATCAAAACTTAAAAGAAGTATTAAATGGAGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCACTATAATCAAAACTTAAAAGAAGTATTAAATGGAGAAATA  650

seq1  AATTCATAAATAAGTATCAGAATGAAATCAAACTACTAAATTATAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAAATAAGTATCAGAATGAAATCAAACTACTAAATTATAATATC  700

seq1  AGGCAATAGAATTC  714
      ||||||||||||||
seq2  AGGCAATAGAATTC  714