BAC Information

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BAC

Clone NameB6Ng01-065B03
Chromosome16 (Build37)
Map Location 49,299,800 - 49,436,336
singlet/doubletdoublet
Overlap geneLOC386061, EG216818, LOC628903
Upstream geneDppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik
Downstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065B03.bB6Ng01-065B03.g
ACCDH884659DH884660
length1,0381,067
definitionDH884659|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B03, 5' end.DH884660|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,299,800 - 49,300,856)(49,435,253 - 49,436,336)
sequence
gaattcaattgtagctgtagttacagaggtggatattttctgtgggtgct
ggaatctgaactccagccaccatgattaaacagcaagcactttaccctct
ggtccgtttcacacacacacaccaccaccaccacacacacattgagcatc
tctttgatctaccctcaaaggtatggagatatttttataaaaatgtgaga
aaagagttgagacacaaattgtttccatttttgcactgaaaatattaaca
aaatgtacacatttatctataccaatgttttactgtaaggaaaaaaaatg
tatcttttttttttctgtaaaaggtttgaatttcttgtgattgctatttt
cccaaataaaattttctttgtaccagaaaaaaaattggcaatcataatgt
aatttgaaattatttgtcatatatcaagatatgtccactggcaatcatct
ctcttctttccagccactgacttatctactttctgtctctatccattgca
tataagtataatacatgttcctttgtgcctggtttctttttttctatatt
ggtcttctttttttttctttaatcaatcattttatttatttactttacat
ttcaaatcttatctcacttcctggtctttccttcatgaacaacccacact
ttccccctcccctttgcctctaagaaggtgctcccccacccacacactcc
ttctaacccctctaacattccccttctctggggcattaaacctccacaag
atcaaatgcctcccatcccctctgatgccagatgagacaatcctctggta
gcagatccatggaccacccaatagagggatggggctacccatccatctaa
atttttttaacccagaattgtccgtctaaagaaaattcggggcaaaatgg
agcagagctgaagaaaggcacccagagacaaaccccttgagatccactcc
atccattgcaccaacccgacactattgatgtgtctagatgtgcttgcaac
aaagatgaattggcgtcctcagatgtctagttacttat
gaattccactttgagtttatcatcatatgctagagtgaaagggttgaagg
aaatggagctgtatcctgaacataattgtcagctcccacccactcattct
gtttactcacccaccaatttcctcatcaaaaaagtgagtagaaaattaat
ggcaataagtaggagaagccacagtgcctgttaaagcatttcatgcagat
ttagttcaggatagatgtacagttattctctgataattaacatctggact
gtggcatctacatactcactacactctcaatggcacagaaaaccaaattg
tggaatttctaaggggacttagcatctcagccaacataacaacatgagaa
ggttcatagtgtcctagctagtgctaaaatagtttcctcttccagatttc
caagttcttaatgttgataactcatcctgactgtagcatgaccttagatt
tagcatacagaaacaaacatctactggcagaaatgttagacagctcaacg
attattttgtgattaaaattgtgctgataaccaataatttattgcatatt
gtcatggatctgaaaattgtatctctgaaaatgcgatgctaaacataatt
ctataatttgcatacatctagctacatactccatgtagtatgcaaacaca
ctgagccagaaggcaaaccaacatcaactgcagcaaacggtaacattcag
gaatgggaaacatccattgtaaatgtctgaacagtcaagacaaagagaag
ctggtgataaactgaaaatacaatataacagaatggggaaatgttaataa
tggtttgacagtaaagaattgtactggctggttttttgtgtcaacttgac
acaggctggagttatcacagagaaaggatcttgagttgcctccatgagat
ccagctgtggggcattttctcattagtgatcaaggggagggctactgtgg
tgggaccatctctgggctggtatcttgggtctgtaaagagcagctgagca
agccatggaagaagcagtaagaaacatccttcatggcctctgcatagtct
gatcctgacctgcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49299800_49300856
seq2: B6Ng01-065B03.b_47_1084

seq1  GAATTCAATTGTAGCTGTAGTTACAGAGGTGGATATTTTCTGTGGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTAGCTGTAGTTACAGAGGTGGATATTTTCTGTGGGTGCT  50

seq1  GGAATCTGAACTCCAGCCACCATGATTAAACAGCAAGCACTTTACCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAACTCCAGCCACCATGATTAAACAGCAAGCACTTTACCCTCT  100

seq1  GGTCCGTTTCACACACACACACCACCACCACCACACACACATTGAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGTTTCACACACACACACCACCACCACCACACACACATTGAGCATC  150

seq1  TCTTTGATCTACCCTCAAAGGTATGGAGATATTTTTATAAAAATGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATCTACCCTCAAAGGTATGGAGATATTTTTATAAAAATGTGAGA  200

seq1  AAAGAGTTGAGACACAAATTGTTTCCATTTTTGCACTGAAAATATTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGAGACACAAATTGTTTCCATTTTTGCACTGAAAATATTAACA  250

seq1  AAATGTACACATTTATCTATACCAATGTTTTACTGTAAGGAAAAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACACATTTATCTATACCAATGTTTTACTGTAAGGAAAAAAAATG  300

seq1  TATCTTTTTTTTTTCTGTAAAAGGTTTGAATTTCTTGTGATTGCTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTTTTTTCTGTAAAAGGTTTGAATTTCTTGTGATTGCTATTTT  350

seq1  CCCAAATAAAATTTTCTTTGTACCAGAAAAAAAATTGGCAATCATAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATAAAATTTTCTTTGTACCAGAAAAAAAATTGGCAATCATAATGT  400

seq1  AATTTGAAATTATTTGTCATATATCAAGATATGTCCACTGGCAATCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAATTATTTGTCATATATCAAGATATGTCCACTGGCAATCATCT  450

seq1  CTCTTCTTTCCAGCCACTGACTTATCTACTTTCTGTCTCTATCCATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCCAGCCACTGACTTATCTACTTTCTGTCTCTATCCATTGCA  500

seq1  TATAAGTATAATACATGTTCCTTTGTGCCTGGTTTCTTTTTTTCTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTATAATACATGTTCCTTTGTGCCTGGTTTCTTTTTTTCTATATT  550

seq1  GGTCTTCTTTTTTTTTCTTTAATCAATCATTTTATTTATTTACTTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTTTTTTTTTCTTTAATCAATCATTTTATTTATTTACTTTACAT  600

seq1  TTCAAATCTTATCTCACTTCCTGGTCTTTCCTTCATGAACAACCCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTTATCTCACTTCCTGGTCTTTCCTTCATGAACAACCCACACT  650

seq1  TTCCCCCTCCCCTTTGCCTCTAAGAAGGTGCTCCCCCACCCACACACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTCCCCTTTGCCTCTAAGAAGGTGCTCCCCCACCCACACACTCC  700

seq1  TTCTAACCCCTCTAACATTCCCCTTCTCTGGGGCATTAAACCTCCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCCCTCTAACATTCCCCTTCTCTGGGGCATTAAACCTCCACAAG  750

seq1  ATCAAATGCCTCCCATCCCCTCTGATGCCAGATGAGACAATCCTCTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGCCTCCCATCCCCTCTGATGCCAGATGAGACAATCCTCTGGTA  800

seq1  GCAGGATCCATGGACCACCCAATAGAGGGATGGGGCTACCCATCCATCTA  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-GATCCATGGACCACCCAATAGAGGGATGGGGCTACCCATCCATCTA  849

seq1  AATTTTTTTAACCCAGAATTGTCCGTCTAAAGAAAATTCGGGGGCAAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AATTTTTTTAACCCAGAATTGTCCGTCTAAAGAAAATTCGGGG--CAAAA  897

seq1  TGGAGCAGAGGCTGAAGGAAAGGCCACCCAGAGACAAAACCACCTTGAGA  950
      ||||||||| |||||| |||||| ||||||||||||||  | ||||||||
seq2  TGGAGCAGA-GCTGAA-GAAAGG-CACCCAGAGACAAA--CCCCTTGAGA  942

seq1  TCCACTCCATCCATTGACACCAAACCCCGACACTATTGATGGTGTCAAGA  1000
      |||||||||||||||| ||||||  ||||||||||||||| ||||| |||
seq2  TCCACTCCATCCATTG-CACCAA--CCCGACACTATTGAT-GTGTCTAGA  988

seq1  TGTGCTTGCAGACAGAAGCATGATATGGCTGTCCTCTGAGAGTGTCTAGT  1050
      |||||||||| ||| ||| ||||  |||| |||||| ||   ||||||||
seq2  TGTGCTTGCA-ACA-AAG-ATGAATTGGC-GTCCTCAGA---TGTCTAGT  1031

seq1  TACTTTT  1057
      ||||| |
seq2  TACTTAT  1038

seq1: chr16_49435253_49436336
seq2: B6Ng01-065B03.g_67_1133 (reverse)

seq1  TCAAGCAGGTCAGGAATCAGGAACTGATGCAGAGGCCATGGAGGGATGTT  50
      |||||||||||||| |||||  ||| ||||||||||||| || |||||||
seq2  TCAAGCAGGTCAGG-ATCAG--ACT-ATGCAGAGGCCAT-GAAGGATGTT  45

seq1  TCTTACTGGCTTTCTTTCCCTGGCTTGCTCAGCCTGCTCTTTTACAGAAC  100
      ||||||| ||||   |||| |||||||||||| |||||| ||||||| ||
seq2  TCTTACT-GCTT--CTTCCATGGCTTGCTCAG-CTGCTC-TTTACAG-AC  89

seq1  CCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGTAGCCCTTCCCCC  150
      |||||| |||||||||||||||||||||| |||| |||||||||  ||||
seq2  CCAAGA-TACCAGCCCAGAGATGGTCCCA-CCAC-AGTAGCCCT--CCCC  134

seq1  TTGATCACTAATTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCAAC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACTAA-TGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCAAC  183

seq1  TCAAGATCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAA  233

seq1  AAACCAGCCAGTACAATTCTTTACTGTCAAACCATTATTAACATTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCAGTACAATTCTTTACTGTCAAACCATTATTAACATTTCCCC  283

seq1  ATTCTGTTATATTGTATTTTCAGTTTATCACCAGCTTCTCTTTGTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTATATTGTATTTTCAGTTTATCACCAGCTTCTCTTTGTCTTGA  333

seq1  CTGTTCAGACATTTACAATGGATGTTTCCCATTCCTGAATGTTACCGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGACATTTACAATGGATGTTTCCCATTCCTGAATGTTACCGTTT  383

seq1  GCTGCAGTTGATGTTGGTTTGCCTTCTGGCTCAGTGTGTTTGCATACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTTGATGTTGGTTTGCCTTCTGGCTCAGTGTGTTTGCATACTAC  433

seq1  ATGGAGTATGTAGCTAGATGTATGCAAATTATAGAATTATGTTTAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTATGTAGCTAGATGTATGCAAATTATAGAATTATGTTTAGCATC  483

seq1  GCATTTTCAGAGATACAATTTTCAGATCCATGACAATATGCAATAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAGAGATACAATTTTCAGATCCATGACAATATGCAATAAATTA  533

seq1  TTGGTTATCAGCACAATTTTAATCACAAAATAATCGTTGAGCTGTCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATCAGCACAATTTTAATCACAAAATAATCGTTGAGCTGTCTAAC  583

seq1  ATTTCTGCCAGTAGATGTTTGTTTCTGTATGCTAAATCTAAGGTCATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCAGTAGATGTTTGTTTCTGTATGCTAAATCTAAGGTCATGCT  633

seq1  ACAGTCAGGATGAGTTATCAACATTAAGAACTTGGAAATCTGGAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGATGAGTTATCAACATTAAGAACTTGGAAATCTGGAAGAGGA  683

seq1  AACTATTTTAGCACTAGCTAGGACACTATGAACCTTCTCATGTTGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTAGCACTAGCTAGGACACTATGAACCTTCTCATGTTGTTATG  733

seq1  TTGGCTGAGATGCTAAGTCCCCTTAGAAATTCCACAATTTGGTTTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAGATGCTAAGTCCCCTTAGAAATTCCACAATTTGGTTTTCTGT  783

seq1  GCCATTGAGAGTGTAGTGAGTATGTAGATGCCACAGTCCAGATGTTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAGAGTGTAGTGAGTATGTAGATGCCACAGTCCAGATGTTAATT  833

seq1  ATCAGAGAATAACTGTACATCTATCCTGAACTAAATCTGCATGAAATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAATAACTGTACATCTATCCTGAACTAAATCTGCATGAAATGCT  883

seq1  TTAACAGGCACTGTGGCTTCTCCTACTTATTGCCATTAATTTTCTACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGCACTGTGGCTTCTCCTACTTATTGCCATTAATTTTCTACTCA  933

seq1  CTTTTTTGATGAGGAAATTGGTGGGTGAGTAAACAGAATGAGTGGGTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGATGAGGAAATTGGTGGGTGAGTAAACAGAATGAGTGGGTGGG  983

seq1  AGCTGACAATTATGTTCAGGATACAGCTCCATTTCCTTCAACCCTTTCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAATTATGTTCAGGATACAGCTCCATTTCCTTCAACCCTTTCAC  1033

seq1  TCTAGCATATGATGATAAACTCAAAGTGGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TCTAGCATATGATGATAAACTCAAAGTGGAATTC  1067