BAC Information

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BAC

Clone NameB6Ng01-065M12
Chromosome16 (Build37)
Map Location 37,784,420 - 37,929,567
singlet/doubletdoublet
Overlap geneFstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
Upstream geneSlc15a2, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709
Downstream geneLOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065M12.bB6Ng01-065M12.g
ACCDH885156DH885157
length1,0691,116
definitionDH885156|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M12, 5' end.DH885157|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,928,489 - 37,929,567)(37,784,420 - 37,785,552)
sequence
gaattctcctctttgggaagagcaatacttttaaccattgagcaattgct
ccagttcccatagctttaaaacagcattttccctgctttgtctatgctac
gtccaggccagtaaacagctggtgggaaactgtttatagatgactaggct
gattttgttttgctttttctttttcttcttctttcgtgattgtggtctcc
tgtgcccagttcttgtggcattcctttcttctcagcactaccagactgta
cagtattcttcttggcttctgaggctcctggcagatcctttattggctct
ggaatgtgaggcattcagtgagtttctctccttttgggaggttggaggag
gaggttcttagctcttaagttcttggctgccttagtaggtctcctgtgaa
tttgaatgatttaaaaaaaatcaagcttctctagatttttatccatagaa
gcaataatctactgagttagcctgagactgccagacgcagatgcttaata
tctggagagatctttaacttgactgttttgttgttgttgttattgacaag
acaaataggttaaaggtagcacctacaggctgctgagatggctaagcagg
taaggatgcttgttgctaagttgatgtcctgaattggattcctgggttcc
acaaggtgataaccaagaccctttgaattctcctctgacttccacgtgca
cactatggcatgcatgtgagcacacacaaataaagaaaggtaattttaaa
ataaagataatgtttaccttataagtacatatgacaggacaaatactaca
cactatgaccattcttagtgtcatagttagggcttccattgctgtgaaga
gacactgcgaccaaggcaactcccattaaaggcagcatttaattgggtct
aatttacagttttagagcttaatccattatcatagcaagaagcatgttgg
caggcagcagacttggtgctgaagagctgagagtctacatcttgttccca
agcaaatagaaaaaactgacttccagggaggtagagatgccccaaagcta
cccgaaagtgaaccacttc
gaattccatttcacagatttgtacaggtagtgctcttccactgagccatc
tcccaagcccagcattaactttttctttaaagtgacattaggaggataaa
ttcttcttgtaaaaggaaatagtcacaggaatcctcttgacgatgaaata
tcaaaaagaataggagtaacagggaatatggacaatatagaaagtgaggt
tcaacaactagtgtgtcttccagagaatcgatcatgtcagtagtaatatg
tgatgatcttattaaacaccacaggcaatgaaaataagtacctgccaaca
ctggagtaaatggcctgcagagatcgtgtgaacaaagcatgtgtacagct
cctacattcctctacccatgacagacatgactaatcaatcacagaattct
ttcctacagaattcagaggaggtttgaaaatctcattcaacaacactcct
tgtagccattagcaatcagtcagagtccctgtgtgagatgaaagctattt
gtcatttctgctggaatactcaattcagtttggcaagcaccgacaatttt
taactgaaattaggataattagatgggagacttcaggattgtatgactga
catagacaacagagagaagaagagctgctggaactgatgttgaaaagtct
caggagaagccatatacaagtttcaggcccaagtaactaagtaaaacaaa
ccctttcatgctggccatcagtgaggatgcagcagtgagccgtttcttgg
ctgctctaacgaaatgcacccttgccctagctagactggaagagctgctg
ctatcgcagaaagcatcttctgcatttgcagagtctggcagtaacttgct
aatagaacactctctaggtagttggagtacaaatatagcctataatttgc
atttctgctttggttgaaagatttccgtgtatctcctccaagacttttta
tgtctcatttggagtatactattacactagctcaaggattattttaaatt
tatgatgcctggtatgttcctttaatagtgtggccaggccctatttgtga
catcagccatggcgatggactatgtgacaatagacaaagctatgttgtac
tgcagacatggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37928489_37929567
seq2: B6Ng01-065M12.b_45_1113 (reverse)

seq1  GAAGTGTGTCACTTTCGGGGTAGGCTTTGGGGCCCTCCTCCTACCTCCCT  50
      ||||||  |||||||| ||||| ||||||||| | ||   ||||||||||
seq2  GAAGTGGTTCACTTTC-GGGTA-GCTTTGGGG-CATC--TCTACCTCCCT  45

seq1  GGAAGTCAGTTTTCTCCTATTTGCCTTGGGAACAAGATGTAGACCTCTCA  100
      ||||||||||||| | ||||||| ||||||||||||||||||| ||||||
seq2  GGAAGTCAGTTTT-TTCTATTTG-CTTGGGAACAAGATGTAGA-CTCTCA  92

seq1  GCTCCTCCAGCACCATGTCTGCCTGCCTGCCACCATGCTTCCTGCTATGA  150
      ||| || |||||||| ||||| |||||||||| |||||||| ||||||||
seq2  GCT-CTTCAGCACCAAGTCTG-CTGCCTGCCAACATGCTTCTTGCTATGA  140

seq1  TAATGGATTAAGCCTCTAAAACTGTAAATTAGATCCAATTAAATGCTGCC  200
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TAATGGATTAAG-CTCTAAAACTGTAAATTAGACCCAATTAAATGCTGCC  189

seq1  CTTAATGGGAGTTGCCTTGGTCGCAGTGTCTCTTCACAGCAATGGAAGCC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGGAGTTGCCTTGGTCGCAGTGTCTCTTCACAGCAATGGAAGCC  239

seq1  CTAACTATGACACTAAGAATGGTCATAGTGTGTAGTATTTGTCCTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGACACTAAGAATGGTCATAGTGTGTAGTATTTGTCCTGTCAT  289

seq1  ATGTACTTATAAGGTAAACATTATCTTTATTTTAAAATTACCTTTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTATAAGGTAAACATTATCTTTATTTTAAAATTACCTTTCTTTA  339

seq1  TTTGTGTGTGCTCACATGCATGCCATAGTGTGCACGTGGAAGTCAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGCTCACATGCATGCCATAGTGTGCACGTGGAAGTCAGAGGA  389

seq1  GAATTC-AAGGGTCTTGGTTATCACCTTGTGGAACCCAGGAATCCAATTC  449
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGTCTTGGTTATCACCTTGTGGAACCCAGGAATCCAATTC  439

seq1  AGGACATCAACTTAGCAACAAGCATCCTTACCTGCTTAGCCATCTCAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCAACTTAGCAACAAGCATCCTTACCTGCTTAGCCATCTCAGCA  489

seq1  GCCTGTAGGTGCTACCTTTAACCTATTTGTCTTGTCAATAACAACAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGGTGCTACCTTTAACCTATTTGTCTTGTCAATAACAACAACAA  539

seq1  CAAAACAGTCAAGTTAAAGATCTCTCCAGATATTAAGCATCTGCGTCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGTCAAGTTAAAGATCTCTCCAGATATTAAGCATCTGCGTCTGG  589

seq1  CAGTCTCAGGCTAACTCAGTAGATTATTGCTTCTATGGATAAAAATCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAGGCTAACTCAGTAGATTATTGCTTCTATGGATAAAAATCTAG  639

seq1  AGAAGCTTGATTTTTTTTAAATCATTCAAATTCACAGGAGACCTACTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGATTTTTTTTAAATCATTCAAATTCACAGGAGACCTACTAAG  689

seq1  GCAGCCAAGAACTTAAGAGCTAAGAACCTCCTCCTCCAACCTCCCAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAAGAACTTAAGAGCTAAGAACCTCCTCCTCCAACCTCCCAAAAG  739

seq1  GAGAGAAACTCACTGAATGCCTCACATTCCAGAGCCAATAAAGGATCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACTCACTGAATGCCTCACATTCCAGAGCCAATAAAGGATCTGC  789

seq1  CAGGAGCCTCAGAAGCCAAGAAGAATACTGTACAGTCTGGTAGTGCTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCTCAGAAGCCAAGAAGAATACTGTACAGTCTGGTAGTGCTGAG  839

seq1  AAGAAAGGAATGCCACAAGAACTGGGCACAGGAGACCACAATCACGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAATGCCACAAGAACTGGGCACAGGAGACCACAATCACGAAAG  889

seq1  AAGAAGAAAAAGAAAAAGCAAAACAAAATCAGCCTAGTCATCTATAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAGAAAAAGCAAAACAAAATCAGCCTAGTCATCTATAAACA  939

seq1  GTTTCCCACCAGCTGTTTACTGGCCTGGACGTAGCATAGACAAAGCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACCAGCTGTTTACTGGCCTGGACGTAGCATAGACAAAGCAGGG  989

seq1  AAAATGCTGTTTTAAAGCTATGGGAACTGGAGCAATTGCTCAATGGTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGTTTTAAAGCTATGGGAACTGGAGCAATTGCTCAATGGTTAA  1039

seq1  AAGTATTGCTCTTCCCAAAGAGGAGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  AAGTATTGCTCTTCCCAAAGAGGAGAATTC  1069

seq1: chr16_37784420_37785552
seq2: B6Ng01-065M12.g_71_1186

seq1  GAATTCCATTTCTCAGATTTGTACAGGTAGTGCTCTTCCACTGAGCCATC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCACAGATTTGTACAGGTAGTGCTCTTCCACTGAGCCATC  50

seq1  TCCCAAGCCCAGCATTAACTTTTTCTTTAAAGTGACATTAGGAGGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCCCAGCATTAACTTTTTCTTTAAAGTGACATTAGGAGGATAAA  100

seq1  TTCTTCTTGTAAAAGGAAATAGTCACAGGAATCCTCTTGACGATGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTAAAAGGAAATAGTCACAGGAATCCTCTTGACGATGAAATA  150

seq1  TCAAAAAGAATAGGAGTAACAGGGAATATGGACAATATAGAAAGTGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAATAGGAGTAACAGGGAATATGGACAATATAGAAAGTGAGGT  200

seq1  TCAACAACTAGTGTGTCTTCCAGAGAATCGATCATGTCAGTAGTAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACTAGTGTGTCTTCCAGAGAATCGATCATGTCAGTAGTAATATG  250

seq1  TGATGATCTTATTAAACACCACAGGCAATGAAAATAAGTACCTGCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCTTATTAAACACCACAGGCAATGAAAATAAGTACCTGCCAACA  300

seq1  CTGGAGTAAATGGCCTGCAGAGATCGTGTGAACAAAGCATGTGTACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAAATGGCCTGCAGAGATCGTGTGAACAAAGCATGTGTACAGCT  350

seq1  CCTACATTCCTCTACCCATGACAGACATGACTAATCAATCACAGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTCCTCTACCCATGACAGACATGACTAATCAATCACAGAATTCT  400

seq1  TTCCTACAGAATTCAGAGGAGGTTTGAAAATCTCATTCAACAACACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGAATTCAGAGGAGGTTTGAAAATCTCATTCAACAACACTCCT  450

seq1  TGTAGCCATTAGCAATCAGTCAGAGTCCCTGTGTGAGATGAAAGCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCATTAGCAATCAGTCAGAGTCCCTGTGTGAGATGAAAGCTATTT  500

seq1  GTCATTTCTGCTGGAATACTCAATTCAGTTTGGCAAGCACCGACAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTGCTGGAATACTCAATTCAGTTTGGCAAGCACCGACAATTTT  550

seq1  TAACTGAAATTAGGATAATTAGATGGGAGACTTCAGGATTGTATGACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAAATTAGGATAATTAGATGGGAGACTTCAGGATTGTATGACTGA  600

seq1  CATAGACAACAGAGAGAAGAAGAGCTGCTGGAACTGATGTTG-AAAGTCT  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATAGACAACAGAGAGAAGAAGAGCTGCTGGAACTGATGTTGAAAAGTCT  650

seq1  CAGGAGAAGCCATATACAAGTTTCAGGCCCAAGTAACTAAGTAAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAGCCATATACAAGTTTCAGGCCCAAGTAACTAAGTAAAACAAA  700

seq1  CCCTTTCATGCTGGCCATCAGTGAGGATGCAGCAGTGAGCCGTTTCTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCATGCTGGCCATCAGTGAGGATGCAGCAGTGAGCCGTTTCTTGG  750

seq1  CTGCTCTAACGAAATGCACCCTTGCCCTAGCTAAGACTGGAAGAGCTGCT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCTCTAACGAAATGCACCCTTGCCCTAGCT-AGACTGGAAGAGCTGCT  799

seq1  GCTATCGCAGAAAGCATCTTCTGCATTAGCAGAGTCTGGCAGTAACTTGC  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTATCGCAGAAAGCATCTTCTGCATTTGCAGAGTCTGGCAGTAACTTGC  849

seq1  TAATAGAACACTCTCTAGGTAGTTGGAGTACAAAATATAGCCTATAAATT  899
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TAATAGAACACTCTCTAGGTAGTTGGAGTAC-AAATATAGCCTAT-AATT  897

seq1  TGCATTTTCTGCTTTGGTTGAAAGATTTCCGTGTAATCTCCTCACAGACT  949
      |||| ||||||||||||||||||||||||||||| ||||||||  |||||
seq2  TGCA-TTTCTGCTTTGGTTGAAAGATTTCCGTGT-ATCTCCTCCAAGACT  945

seq1  TTTTATGTCCTCATTTGGAAGTAATAACTATTACACTAGCTCCAGGATTA  999
      |||||||| ||||||||| ||||   |||||||||||||||| |||||| 
seq2  TTTTATGT-CTCATTTGG-AGTA--TACTATTACACTAGCTCAAGGATT-  990

seq1  ATTTTAAATTTATGATGCCTGGTATGTTCTTTAAATAGTGT-GCCAGGCA  1048
      ||||||||||||||||||||||||||||| || |||||||| ||||||| 
seq2  ATTTTAAATTTATGATGCCTGGTATGTTCCTTTAATAGTGTGGCCAGGCC  1040

seq1  CTATTTGTGACCAATCAGGCCATTGCCAGATGAACTATGTGACATATGAC  1098
      |||||||||||  |||| ||||| ||  |||| |||||||||||   |||
seq2  CTATTTGTGAC--ATCA-GCCATGGC--GATGGACTATGTGACAATAGAC  1085

seq1  AAAAGCTATGTTGTACTGCAGGCACATGTGTGTGT  1133
       ||||||||||||||||||||  ||||| ||||||
seq2  -AAAGCTATGTTGTACTGCAG--ACATG-GTGTGT  1116