BAC Information

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BAC

Clone NameB6Ng01-066I14
Chromosome16 (Build37)
Map Location 67,595,697 - 67,704,467
singlet/doubletdoublet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I14.bB6Ng01-066I14.g
ACCDH885688DH885689
length1,190629
definitionDH885688|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I14, 5' end.DH885689|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,703,251 - 67,704,467)(67,595,697 - 67,596,329)
sequence
gaattcagagtgaataacttatttctcttaatatactaaacattccagtt
ttgtttattatacagtaaataattccattttatctgttcttatggtgata
gaatttatagaagttcttaaatattattatgaaaaaatattcatttagtg
atatatttatttgtagccaaacatataaacacatacaaatgtaaaacacc
caagtactccaggctctacaattgcagttaaataagaaatgatcagatta
tatgatcacatccaacttaaatataaaactatatttgtttcccaaattcc
aacagaacagaatgcaaacacatttcagataccagctaagaatacaagga
tttctactatttgcaaactaaagaaagttttaaagcttgtaaacctttat
tttgtgaacaaataaatcatttgctttcaaatatttccaagtcacatcaa
ctgggagaagattttgatctgagcacgtttatatgatctttgcaaataat
tagcaaagcacaagataagctaacaaaaccaaactgcagtatagagtgag
atagcactgtgggtaagctgatatttagaagtactacagttgaaggtatt
ctaagatatatacaaacataataagctaagtaaacatagaacacaattaa
aatttgtctaaatctacatccccagagtagaggttttataacatttgctt
aatcatatacatgataacaaattgctagtatgcctaaaatgtaaaagaac
agtgtattacttagggacataaaatcttttaattcgtgaaataacttggt
gggattttttcctagtagagatttaaaaattataaactaaatttgtttaa
atttcctacaattatggtattcgattatataactacaccaatatcatttt
cttcttcttcttcttcatttttaatatcttctctggggtaatgtagttta
gttcaaccaataagcctcaagtagtcagaaatgttgatatataaaaacag
tacagggcaaggtctgagtgtgctgagtactcctgtaactgcagcactca
gcagcagagaaagtagaactttgggtcagacagccttatctactagcagc
tccatggttgcaacctaattatagactattcttaataatcactatacttc
acccaagggagagagtattgctagtgtcactggtaggcat
gaattctctgaatgtttaaatatgcaccatatttttctctgtccatcttt
acaaagctaaaaatcatttatgatattcaaaacctcgctcatattgtgaa
agaatgaaaactaagaattgtaatgcaatgcaaaggctaatattcgacag
aaaactcttcaggctgccatgtctcagttgacaagttaaaagccaaaata
atatggatgaaatgcctttacatcctagcaggtgtctagtcatcaatact
actcactgaaggccattgtgtgtagagcacttctcttcgtttcctaattc
cctgtctggctttaggcagaaggaacgggaaggtagacaatgattggtga
cacctcagagaagtttgcacaggagaaaaatataaaggttttataggaat
gtgccagaattacttaatcagcagccacttaaatcatttgatttaccaca
taatttgctttattaaaaaaatgttatttgtaagatttggacataatagt
aaaattccaaatcaggaatgacaataaaagaatgacatatatatatatat
atatatatatatatatatatatatatatatatatatatatacataaatat
atatatataaatattattagtatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67703251_67704467
seq2: B6Ng01-066I14.b_47_1236 (reverse)

seq1  ATGCCTACCACGTGCACA-TAGCAATAACTCTCTCCCCTTTGGTGTAGTA  49
      |||||||||| ||| ||| ||||||| ||||||| ||||| |||| ||||
seq2  ATGCCTACCA-GTG-ACACTAGCAAT-ACTCTCT-CCCTTGGGTGAAGTA  46

seq1  TTAGTGGTATTTATTTAAGATATGGTCTTATAATGTAGTGTTGCATACCA  99
       |||||  |||   |||||| || ||| |||||| ||| |||||| ||||
seq2  -TAGTG--ATT--ATTAAGA-ATAGTC-TATAAT-TAG-GTTGCA-ACCA  86

seq1  TGGAGCTTGCTATGTAGATAAGGCTGGTCTTGAACTCAAAAGTCTACCTG  149
      |||||| ||||| |||||||||||| ||||   || ||||  |||| || 
seq2  TGGAGC-TGCTA-GTAGATAAGGCT-GTCT--GACCCAAAGTTCTA-CTT  130

seq1  TCTCTGCTGCTTGAGTGCTGCAGTTACAGGAGTACTTCAGCACACTCAGA  199
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TCTCTGCTGC-TGAGTGCTGCAGTTACAGGAGTAC-TCAGCACACTCAGA  178

seq1  CCTTGCCCTGTTACTGTTTTTATAATATTCAACATTTTCTGACCTACTTG  249
      |||||||||| |||||||||||| ||| |||||| ||||||| |||||||
seq2  CCTTGCCCTG-TACTGTTTTTAT-ATA-TCAACA-TTTCTGA-CTACTTG  223

seq1  AGGCTTATTGGTTGAACTAAACTACATTTACCCCAGAGAAGATATTAAAA  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCTTATTGGTTGAACTAAACTACA-TTACCCCAGAGAAGATATTAAAA  272

seq1  ATGAAGAAGAAGAAGAAGAAAATGATATTGGTGTAGTTATATAATCGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAGAAGAAGAAGAAAATGATATTGGTGTAGTTATATAATCGAAT  322

seq1  ACCATAATTGTAGGAAATTTAAACAAATTTAGTTTATAATTTTTAAATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATTGTAGGAAATTTAAACAAATTTAGTTTATAATTTTTAAATCT  372

seq1  CTACTAGGAAAAAATCCCACCAAGTTATTTCACGAATTAAAAGATTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGAAAAAATCCCACCAAGTTATTTCACGAATTAAAAGATTTTAT  422

seq1  GTCCCTAAGTAATACACTGTTCTTTTACATTTTAGGCATACTAGCAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAAGTAATACACTGTTCTTTTACATTTTAGGCATACTAGCAATTT  472

seq1  GTTATCATGTATATGATTAAGCAAATGTTATAAAACCTCTACTCTGGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGTATATGATTAAGCAAATGTTATAAAACCTCTACTCTGGGGA  522

seq1  TGTAGATTTAGACAAATTTTAATTGTGTTCTATGTTTACTTAGCTTATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTAGACAAATTTTAATTGTGTTCTATGTTTACTTAGCTTATTA  572

seq1  TGTTTGTATATATCTTAGAATACCTTCAACTGTAGTACTTCTAAATATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATATATCTTAGAATACCTTCAACTGTAGTACTTCTAAATATCA  622

seq1  GCTTACCCACAGTGCTATCTCACTCTATACTGCAGTTTGGTTTTGTTAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCCACAGTGCTATCTCACTCTATACTGCAGTTTGGTTTTGTTAGC  672

seq1  TTATCTTGTGCTTTGCTAATTATTTGCAAAGATCATATAAACGTGCTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGTGCTTTGCTAATTATTTGCAAAGATCATATAAACGTGCTCAG  722

seq1  ATCAAAATCTTCTCCCAGTTGATGTGACTTGGAAATATTTGAAAGCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTTCTCCCAGTTGATGTGACTTGGAAATATTTGAAAGCAAAT  772

seq1  GATTTATTTGTTCACAAAATAAAGGTTTACAAGCTTTAAAACTTTCTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTGTTCACAAAATAAAGGTTTACAAGCTTTAAAACTTTCTTTA  822

seq1  GTTTGCAAATAGTAGAAATCCTTGTATTCTTAGCTGGTATCTGAAATGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAAATAGTAGAAATCCTTGTATTCTTAGCTGGTATCTGAAATGTG  872

seq1  TTTGCATTCTGTTCTGTTGGAATTTGGGAAACAAATATAGTTTTATATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCTGTTCTGTTGGAATTTGGGAAACAAATATAGTTTTATATTT  922

seq1  AAGTTGGATGTGATCATATAATCTGATCATTTCTTATTTAACTGCAATTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGATGTGATCATATAATCTGATCATTTCTTATTTAACTGCAATTG  972

seq1  TAGAGCCTGGAGTACTTGGGTGTTTTACATTTGTATGTGTTTATATGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTGGAGTACTTGGGTGTTTTACATTTGTATGTGTTTATATGTTT  1022

seq1  GGCTACAAATAAATATATCACTAAATGAATATTTTTTCATAATAATATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAAATAAATATATCACTAAATGAATATTTTTTCATAATAATATTT  1072

seq1  AAGAACTTCTATAAATTCTATCACCATAAGAACAGATAAAATGGAATTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCTATAAATTCTATCACCATAAGAACAGATAAAATGGAATTAT  1122

seq1  TTACTGTATAATAAACAAAACTGGAATGTTTAGTATATTAAGAGAAATAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATAATAAACAAAACTGGAATGTTTAGTATATTAAGAGAAATAA  1172

seq1  GTTATTCACTCTGAATTC  1217
      ||||||||||||||||||
seq2  GTTATTCACTCTGAATTC  1190

seq1: chr16_67595697_67596329
seq2: B6Ng01-066I14.g_66_694

seq1  GAATTCTCTGAATGTTTAAATATGCACCATATTTTTCTCTGTCCATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAATGTTTAAATATGCACCATATTTTTCTCTGTCCATCTTT  50

seq1  ACAAAGCTAAAAATCATTTATGATATTCAAAACCTCGCTCATATTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTAAAAATCATTTATGATATTCAAAACCTCGCTCATATTGTGAA  100

seq1  AGAATGAAAACTAAGAATTGTAATGCAATGCAAAGGCTAATATTCGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAAACTAAGAATTGTAATGCAATGCAAAGGCTAATATTCGACAG  150

seq1  AAAACTCTTCAGGCTGCCATGTCTCAGTTGACAAGTTAAAAGCCAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTCAGGCTGCCATGTCTCAGTTGACAAGTTAAAAGCCAAAATA  200

seq1  ATATGGATGAAATGCCTTTACATCCTAGCAGGTGTCTAGTCATCAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGAAATGCCTTTACATCCTAGCAGGTGTCTAGTCATCAATACT  250

seq1  ACTCACTGAAGGCCATTGTGTGTAGAGCACTTCTCTTCGTTTCCTAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGAAGGCCATTGTGTGTAGAGCACTTCTCTTCGTTTCCTAATTC  300

seq1  CCTGTCTGGCTTTAGGCAGAAGGAACGGGAAGGTAGACAATGATTGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGGCTTTAGGCAGAAGGAACGGGAAGGTAGACAATGATTGGTGA  350

seq1  CACCTCAGAGAAGTTTGCACAGGAGAAAAATATAAAGGTTTTATAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAGAAGTTTGCACAGGAGAAAAATATAAAGGTTTTATAGGAAT  400

seq1  GTGCCAGAATTACTTAATCAGCAGCCACTTAAATCATTTGATTTACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGAATTACTTAATCAGCAGCCACTTAAATCATTTGATTTACCACA  450

seq1  TAATTTGCTTTATTAAAAAAATGTTATTTGTAAGATTTGGACATAATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTTATTAAAAAAATGTTATTTGTAAGATTTGGACATAATAGT  500

seq1  AAAATTCCAAATCAGGAATGACAATAAAAGAATGACATATATATATATAT  550
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  AAAATTCCAAATCAGGAATGACAATAAAAGAATGAC----ATATATATAT  546

seq1  ATATATATATATATATATATATATATATATATATATATATATATACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATACATAA  596

seq1  ATATATATATATAAATAATATATGTATGTGTGT  633
      ||||||||||||||||| |||  ||||||||||
seq2  ATATATATATATAAATATTATTAGTATGTGTGT  629