BAC Information

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BAC

Clone NameB6Ng01-067I01
Chromosome16 (Build37)
Map Location 13,802,997 - 13,903,557
singlet/doubletdoublet
Overlap geneRrn3, Ntan1, Pdxdc1
Upstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757
Downstream geneMpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I01.bB6Ng01-067I01.g
ACCDH886371DH886372
length882978
definitionDH886371|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I01, 5' end.DH886372|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,802,997 - 13,803,536)(13,902,566 - 13,903,557)
sequence
gaattctttatgtgttttagatattaaccatttttcagatgtgtaattgg
tgtaagttcttttgccattctgtggtcttccattttgtcctttgctgcac
agaaggtttttaattccatgaagtctcatttattgttcttagtgcctgtt
ctatcagtcttctcctgtgccaatgagttcaagattattctccactttct
cttctattgcattcagtatatctggccttatattgaagccttgattcatt
tgtggttgagttttgtgcagggggattaatagggatttatttacattctt
ccccattcagccatgcagccatccagtttgacttggccagcataattgta
gaaggtgctctttttcccagtgtatagtttttctttttggtcaaaaatca
gctgaccagaggtatgtggccttcaatttgattccattgataaacatttc
tatttgtttgccaataccatgcagtttttattactagctctgtagaaccc
tttgagattggggatagtgatacctgcagttcttattattcaggattgtt
ttagcgctctctctctctgtctctctctctctctctgtctctgtgtgtgt
gtgtgtgtgtgtttccatatgaagctggaagttgcccttttaagttctgt
ggagaattgtgttggatctctaggattgctgttgtcactatatttgttct
actgatccatgagcatggggagagctttccatcttgtagtattttcttca
gcagtgtcttaaaagtttttattatgtgagtttttcatgtgcttggttag
atttaccccaaggatttcttttttttttttttttttttaattttaattaa
aggcatgtgctgccgcccctcaccttcttttc
gaattcctttctgtctggacttctgaggaaagagctgacaaaatacatca
tcccgcgcatgcgcaagggtgagcgctggtcttaggctgctaaggtaaat
aactactccattcctgaccggtgttgacggcggaggacttgaaagcctgg
cttgggccgtgcagctgagtcgatagtattttacctggtggatatctcat
tgcgacggtcgtcacaggcttcaagttggaccgccctatagacggggttc
ttgccaccaagcagcgttaggaccggccggcgtgacgcccaagtacggaa
gcctagaaggccccgccccgggaggccccgcccacccgacgggcctagcc
ccgccttcagcaagccgcaggatacctgcgggccgcgctgcggggcagct
cctcctcctctccgccccgccggctgcgggcggggaggacgtcagcgctg
ccagcgtggaaaccgctgcgggccgcgggaggcggaagtagtgcccagca
ccgcgggcccagcaccggacgcctcagccatggacgcgtccctggagaag
gtacggaaggagcgggcggcgctgtggtcccgggtcttcgccaccggggc
gactggtttccccgtaggactaaggagtctcgttggaggagggcggccgg
gccgggccgggccgggccacgtcacggggcccggtggctgaggggaggtg
ggcccggcgctgtcggagccggctttggctttaccgaggctcggcgtgga
cccggcctgaacccgcgctggtcctgtagggtgacagagcaatcggtgtg
ggccccagaagcgtcgggaagaagtcctagttgtcgcggaggcccctgca
aagccacagatgttcagtgctttccaagttaggagacaaattgtaacttt
ggcgggcgtagaatacctgggacttggtgaaaacatggcttgcagctcgg
tctcaagctcggtgggcgggactcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_13802997_13803536
seq2: B6Ng01-067I01.b_383_923

seq1  ATAATTGTAGAAGGTGCTCTTTTTCCCAGTGTATAGTTTTTCTTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTAGAAGGTGCTCTTTTTCCCAGTGTATAGTTTTTCTTTTTGGT  50

seq1  CAAAAATCAGCTGACCAGAGGTATGTGGCCTTCAATTTGATTCCATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCAGCTGACCAGAGGTATGTGGCCTTCAATTTGATTCCATTGAT  100

seq1  AAACATTTCTATTTGTTTGCCAATACCATGCAGTTTTTATTACTAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCTATTTGTTTGCCAATACCATGCAGTTTTTATTACTAGCTCT  150

seq1  GTAGAACCCTTTGAGATTGGGGATAGTGATACCTGCAGTTCTTATTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACCCTTTGAGATTGGGGATAGTGATACCTGCAGTTCTTATTATTC  200

seq1  AGGATTGTTTTAGCGCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTTTTAGCGCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTC  250

seq1  TGTGTGTGTGTGTGTGTGTGTTTCCATATGAAGCTGGAAGTTGCCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTTTCCATATGAAGCTGGAAGTTGCCCTTTT  300

seq1  AAGTTCTGTGGAGAATTGTGTTGGATCTCTAGGATTGCTGTTGTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGTGGAGAATTGTGTTGGATCTCTAGGATTGCTGTTGTCACTAT  350

seq1  ATTTGTTCTACTGATCCATGAGCAT-GGGAGAGCTTTCCATCTTGTAGTA  399
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTGTTCTACTGATCCATGAGCATGGGGAGAGCTTTCCATCTTGTAGTA  400

seq1  TTTTCTTCAGCAGTGTCTTAAAAGTTTTTATTATGTGAGTTTTTCATGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAGCAGTGTCTTAAAAGTTTTTATTATGTGAGTTTTTCATGTG  450

seq1  CTTGGTTAGATTTACCCCAAGGATTTCTTTTTTTTTTTTTTTTTTTTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTAGATTTACCCCAAGGATTTCTTTTTTTTTTTTTTTTTTTTAAT  500

seq1  TTTAATTAAAGGCATGTGCTGCCGCCACCCAGCTTCTTTTC  540
      |||||||||||||||||||||||||| | || |||||||||
seq2  TTTAATTAAAGGCATGTGCTGCCGCCCCTCACCTTCTTTTC  541

seq1: chr16_13902566_13903557
seq2: B6Ng01-067I01.g_66_1043 (reverse)

seq1  AACTGAGTTCCCGCCCACCCGAGCTTGAGACCCGAGGCTGCAAAGCCATG  50
      ||||||| ||||||||| |||||||||||| |||| ||||| ||||||||
seq2  AACTGAG-TCCCGCCCA-CCGAGCTTGAGA-CCGA-GCTGC-AAGCCATG  45

seq1  TTTTCACCAAGGTCCCCAGGTGATTCCTACGCCCGCCAAAAGTTACAATT  100
      |||||||||||   ||||||| ||| ||||||||||| ||||||||||||
seq2  TTTTCACCAAG--TCCCAGGT-ATT-CTACGCCCGCC-AAAGTTACAATT  90

seq1  TGTCTCCTAACTTGGAAAGCACTGAACATCTGTGGCTTTTGCAGGGGCCT  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTCTCCTAACTTGGAAAGCACTGAACATCTGTGGC-TTTGCAGGGGCCT  139

seq1  CCGCGACAACTAGGACTTCTTCCCGTACGCTTCTGGGGCCCACACCGATT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCGCGACAACTAGGACTTCTTCCCG-ACGCTTCTGGGGCCCACACCGATT  188

seq1  GCTCCTGTCACCCTACAGGACCAGCGCGGGTTCAGGCCGGGTCCTACGCC  250
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCT-CTGTCACCCTACAGGACCAGCGCGGGTTCAGGCCGGGTCC-ACGCC  236

seq1  GAGCCTCGGTAAAGCCAAAGCCGGCTCCGACAGCGCCGGGCCCACCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCGGTAAAGCCAAAGCCGGCTCCGACAGCGCCGGGCCCACCTCCC  286

seq1  CTCAGCCACCGGGCCCCGTGACGTGGCCCGGCCCGGCCCGGCCCGGCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCACCGGGCCCCGTGACGTGGCCCGGCCCGGCCCGGCCCGGCCGC  336

seq1  CCTCCTCCAACGAGACTCCTTAGTCCTACGGGGAAACCAGTCGCCCCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCAACGAGACTCCTTAGTCCTACGGGGAAACCAGTCGCCCCGGT  386

seq1  GGCGAAGACCCGGGACCACAGCGCCGCCCGCTCCTTCCGTACCTTCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAGACCCGGGACCACAGCGCCGCCCGCTCCTTCCGTACCTTCTCCA  436

seq1  GGGACGCGTCCATGGCTGAGGCGTCCGGTGCTGGGCCCGCGGTGCTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGCGTCCATGGCTGAGGCGTCCGGTGCTGGGCCCGCGGTGCTGGGC  486

seq1  ACTACTTCCGCCTCCCGCGGCCCGCAGCGGTTTCCACGCTGGCAGCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCGCCTCCCGCGGCCCGCAGCGGTTTCCACGCTGGCAGCGCTG  536

seq1  ACGTCCTCCCCGCCCGCAGCCGGCGGGGCGGAGAGGAGGAGGAGCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCTCCCCGCCCGCAGCCGGCGGGGCGGAGAGGAGGAGGAGCTGCCC  586

seq1  CGCAGCGCGGCCCGCAGGTATCCTGCGGCTTGCTGAAGGCGGGGCTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGCGGCCCGCAGGTATCCTGCGGCTTGCTGAAGGCGGGGCTAGGC  636

seq1  CCGTCGGGTGGGCGGGGCCTCCCGGGGCGGGGCCTTCTAGGCTTCCGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCGGGTGGGCGGGGCCTCCCGGGGCGGGGCCTTCTAGGCTTCCGTAC  686

seq1  TTGGGCGTCACGCCGGCCGGTCCTAACGCTGCTTGGTGGCAAGAACCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCGTCACGCCGGCCGGTCCTAACGCTGCTTGGTGGCAAGAACCCCG  736

seq1  TCTATAGGGCGGTCCAACTTGAAGCCTGTGACGACCGTCGCAATGAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGCGGTCCAACTTGAAGCCTGTGACGACCGTCGCAATGAGATA  786

seq1  TCCACCAGGTAAAATACTATCGACTCAGCTGCACGGCCCAAGCCAGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAGGTAAAATACTATCGACTCAGCTGCACGGCCCAAGCCAGGCTT  836

seq1  TCAAGTCCTCCGCCGTCAACACCGGTCAGGAATGGAGTAGTTATTTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTCCGCCGTCAACACCGGTCAGGAATGGAGTAGTTATTTACCT  886

seq1  TAGCAGCCTAAGACCAGCGCTCACCCTTGCGCATGCGCGGGATGATGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTAAGACCAGCGCTCACCCTTGCGCATGCGCGGGATGATGTAT  936

seq1  TTTGTCAGCTCTTTCCTCAGAAGTCCAGACAGAAAGGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGCTCTTTCCTCAGAAGTCCAGACAGAAAGGAATTC  978