BAC Information

Click to search

BAC

Clone NameB6Ng01-068G04
Chromosome16 (Build37)
Map Location 36,134,748 - 36,302,343
singlet/doubletdoublet
Overlap geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1
Upstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Downstream geneEG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068G04.bB6Ng01-068G04.g
ACCDH886985DH886986
length916984
definitionDH886985|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G04, 5' end.DH886986|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,134,748 - 36,135,666)(36,301,786 - 36,302,343)
sequence
gaattcagcaaacttgccttctcagtggaagccaggtcctcaggcttaaa
tcaccatgtgagatgcatagccaacagccagtccataggggcttttcctg
agtctctcctaggatttcaacatctggctacaaaccataaaagctactta
atgggctgaaagaaacagcctcttttacatggaaattaacagtgtagagg
aaatcaatatatcaagggaatattataaaataaaacttaattaagtactg
tttcatgatcacaggtttaagaccaaaaaggacattaggcactgctgcca
agccctttactgtcaggtgagcaggtacagggtggtggctcagctcccag
atgttacttatctgtcctgtcttgcaggagacagcctgagggcacaattc
ccactaaagtgttgggaggcagagaagcaggcagtaaaatgtgcattttt
agaaagcattttatcaatcacagcaataattccccttcaaagaacaccat
ggatcctatactacaagaaaacccttgttaagtcaggaaattcagtctac
tcctccaagatgatggtcacttgggtccccacacagtgtcaggccagagg
gggttattgtatccctagaatcagctgaagagtccgagacaaatatcgcc
actctgtgtcgtttgtacatgtcaaatactttgtatttactgatcaaacc
tatttacagacatacctatttgggtccttcattgcaaatcatcataatat
tgatttttgctttgtttttattttttctcgagtgtgtgtgtgtgtgtgtg
tgtgtgtttatgtgcatttttattttttgaggtaggtttaatgggtagcc
ccaactagcttggaactttctttttgtttttttgtttgtttgtttttgtt
tttgtttgtttgtttg
gaattccagacacaggacccagaggagagaattgaggcacaggaacatga
agggaggtatcagctagagtgggagaagctgaaatcccaaatctcagagt
cagtaatgtatgctcagagtggacagtacacaaagaacagtttagaggag
cttaagtactgaagtaaatgttatgtcttgaagcaataaaagagaaataa
gaaatgtttagtaaacatacatagatgttgaaaaaaggaaagaaactgag
tattgacaaatatagagagaaattttaaacttgaatttaataaagtcttc
aaagaaaagagagaattggcaagatcaataactgaaaatattttctgtgt
taataatgtaaaaatatatagcagagggcattgataccctttagagtctc
atttcaattatcataggtctgaagaaagacttcagtattcacaaggtaaa
acaagataactatcctgtcatctaatgaatttggggtcttccccttgtga
aagaaagatgaaatttcaagacctgtaagtcatataaaggactcagaaat
tgctggttgtttgtgagcctagaggctgcctgaggctgagaacaaacagg
aacaaacccgagcatgccctgtagttaaagcattcctgggaacagcttga
ctataaagataaagaggaatgtgaggatataacagggctatctgaactga
gtcaacaaccatctggcccggcacctccctctgcccatttccctttgatg
cagttgaaagtcataaattgaccaggtactctgctaacattgataaacat
ccaactcacagaactctgacaccctgacctacatgtattcttttgctgct
gacaccctgacctgcacgtacatgtaatttttctgctgatgtatgaataa
gccaaccatgtgtcactatgctgaattcccacccctaagccctttacccc
atagaacccctagctttgagctcaggttgaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36134748_36135666
seq2: B6Ng01-068G04.b_47_961

seq1  GAATTCAGCAAACTTGCCTTCTCAGTGGAAGCCAGGTCCTCAGGCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAACTTGCCTTCTCAGTGGAAGCCAGGTCCTCAGGCTTAAA  50

seq1  TCACCATGTGAGATGCATAGCCAACAGCCAGTCCATAGGGGCTTTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGTGAGATGCATAGCCAACAGCCAGTCCATAGGGGCTTTTCCTG  100

seq1  AGTCTCTCCTAGGATTTCAACATCTGGCTACAAACCATAAAAGCTACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCCTAGGATTTCAACATCTGGCTACAAACCATAAAAGCTACTTA  150

seq1  ATGGGCTGAAAGAAACAGCCTCTTTTACATGGAAATTAACAGTGTAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGAAAGAAACAGCCTCTTTTACATGGAAATTAACAGTGTAGAGG  200

seq1  AAATCAATATATCAAGGGAATATTATAAAATAAAACTTAATTAAGTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATATATCAAGGGAATATTATAAAATAAAACTTAATTAAGTACTG  250

seq1  TTTCATGATCACAGGTTTAAGACCAAAAAGGACATTAGGCACTGCTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATCACAGGTTTAAGACCAAAAAGGACATTAGGCACTGCTGCCA  300

seq1  AGCCCTTTACTGTCAGGTGAGCAGGTACAGGGTGGTGGCTCAGCTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTACTGTCAGGTGAGCAGGTACAGGGTGGTGGCTCAGCTCCCAG  350

seq1  ATGTTACTTATCTGTCCTGTCTTGCAGGAGACAGCCTGAGGGCACAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTTATCTGTCCTGTCTTGCAGGAGACAGCCTGAGGGCACAATTC  400

seq1  CCACTAAAGTGTTGGGAGGCAGAGAAGCAGGCAGTAAAATGTGCATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAGTGTTGGGAGGCAGAGAAGCAGGCAGTAAAATGTGCATTTTT  450

seq1  AGAAAGCATTTTATCAATCACAGCAATAATTCCCCTTCAAAGAACACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATTTTATCAATCACAGCAATAATTCCCCTTCAAAGAACACCAT  500

seq1  GGATCCTATACTACAAGAAAACCCTTGTTAAGTCAGGAAATTCAGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTATACTACAAGAAAACCCTTGTTAAGTCAGGAAATTCAGTCTAC  550

seq1  TCCTCCAAGATGATGGTCACTTGGGTCCCCACACAGTGTCAGGCCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGATGATGGTCACTTGGGTCCCCACACAGTGTCAGGCCAGAGG  600

seq1  GGGTTATTGTATCCCTAGAATCAGCTGAAGAGTCCGAGACAAATATCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGTATCCCTAGAATCAGCTGAAGAGTCCGAGACAAATATCGCC  650

seq1  ACTCTGTGTCGTTTGTACATGTCAAATACTTTGTATTTACTGATCAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTCGTTTGTACATGTCAAATACTTTGTATTTACTGATCAAACC  700

seq1  TATTTACAGACATACCTATTTGGGTCCTTCATTGCAAATCATCATAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAGACATACCTATTTGGGTCCTTCATTGCAAATCATCATAATAT  750

seq1  TGATTTTTGCTTTGTTTTTATTTTTTCTCGAGTGTGTGTGTGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGCTTTGTTTTTATTTTTTCTCGAGTGTGTGTGTGTGTGTGTG  800

seq1  TGTGTGTTTATGTGCATTTTTA-TTTTTGAGGTAGGTTTTAATGGGTAGC  849
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TGTGTGTTTATGTGCATTTTTATTTTTTGAGGTAGG-TTTAATGGGTAGC  849

seq1  CCCAACTAGCTTGGAACTTTCTTTTTTGTTTTTTTGTTTGTTTGTTTTTG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCAACTAGCTTGGAACTTTC-TTTTTGTTTTTTTGTTTGTTTGTTTTTG  898

seq1  TTTTTTGTTTTGTTTTGTTT  919
       |||||||||   |||||||
seq2  -TTTTTGTTT--GTTTGTTT  915

seq1: chr16_36301786_36302343
seq2: B6Ng01-068G04.g_67_624 (reverse)

seq1  AACCAGCAATTTCTGAGTCCTTTATATGACTTACAGGTCTTGAAATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAATTTCTGAGTCCTTTATATGACTTACAGGTCTTGAAATTTCA  50

seq1  TCTTTCTTTCACAAGGGGAAGACCCCAAATTCATTAGATGACAGGATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCACAAGGGGAAGACCCCAAATTCATTAGATGACAGGATAGT  100

seq1  TATCTTGTTTTACCTTGTGAATACTGAAGTCTTTCTTCAGACCTATGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTTTACCTTGTGAATACTGAAGTCTTTCTTCAGACCTATGATA  150

seq1  ATTGAAATGAGACTCTAAAGGGTATCAATGCCCTCTGCTATATATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGAGACTCTAAAGGGTATCAATGCCCTCTGCTATATATTTTTA  200

seq1  CATTATTAACACAGAAAATATTTTCAGTTATTGATCTTGCCAATTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAACACAGAAAATATTTTCAGTTATTGATCTTGCCAATTCTCTC  250

seq1  TTTTCTTTGAAGACTTTATTAAATTCAAGTTTAAAATTTCTCTCTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAAGACTTTATTAAATTCAAGTTTAAAATTTCTCTCTATATT  300

seq1  TGTCAATACTCAGTTTCTTTCCTTTTTTCAACATCTATGTATGTTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATACTCAGTTTCTTTCCTTTTTTCAACATCTATGTATGTTTACTA  350

seq1  AACATTTCTTATTTCTCTTTTATTGCTTCAAGACATAACATTTACTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTATTTCTCTTTTATTGCTTCAAGACATAACATTTACTTCAG  400

seq1  TACTTAAGCTCCTCTAAACTGTTCTTTGTGTACTGTCCACTCTGAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGCTCCTCTAAACTGTTCTTTGTGTACTGTCCACTCTGAGCATA  450

seq1  CATTACTGACTCTGAGATTTGGGATTTCAGCTTCTCCCACTCTAGCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGACTCTGAGATTTGGGATTTCAGCTTCTCCCACTCTAGCTGAT  500

seq1  ACCTCCCTTCATGTTCCTGTGCCTCAATTCTCTCCTCTGGGTCCTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTTCATGTTCCTGTGCCTCAATTCTCTCCTCTGGGTCCTGTGTC  550

seq1  TGGAATTC  558
      ||||||||
seq2  TGGAATTC  558