BAC Information

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BAC

Clone NameB6Ng01-068O19
Chromosome16 (Build37)
Map Location 90,169,050 - 90,326,628
singlet/doubletdoublet
Overlap geneLOC100040440, Sod1, Sfrs15
Upstream geneEG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694
Downstream geneLOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O19.bB6Ng01-068O19.g
ACCDH887377DH887378
length9641,019
definitionDH887377|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O19, 5' end.DH887378|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,325,665 - 90,326,628)(90,169,050 - 90,170,081)
sequence
gaattcattgtgtcaccaaaataaaaagtcatcaagggggctggtgagat
ggctcagcagctaagagcactgactgctcttccaaaggtcctgagttcaa
atcccagcaaccatatggtggcttacaaccacctgtaatgagatctgact
ccctcttctggtgtgtctgaagtcagctacagtgtacttacatataatca
aaataataataataataattaataaataaataaagtcatgaaggtaggag
ggtgacttgtgggtaagaagggactcagtggagagagcaaaataaataca
cgatatatagctcacacatacatattatacatttacatatatgcatatac
aatacacacacatttacacacatgtgcacacaagcgtgcacatgacattg
tcaaagagttgcttcatggagtattaaggttactgtttgtctctgttgta
aacaccatttaatgtttattttcccttcaaataagtccagctgtaagggg
atggctggttttcagattttgatttttctgtgctgtttatgttgttttga
tgtagggtattgctatctagtgtagactggcctggaaatctctatggaac
ccaggctggtctcaaacttatgatcttcctcctcctctaccatcccagtg
ctgagacaaaagcaacttaaagaaaggaaggttggctttggctcacagtt
tgaggtacagtccctttgtggcagggaggggctggcagcaagagccaaag
aaacatcgaggacaaggaagaggaccagaggcagctgcactacgaggaaa
tggagagggatggaagctggaagagatgccttcccctttcctcccttgca
tttggtccaggaccacacgagaagcagactaaagagctccagagagcact
cgggacagatcatcaggaatggaaggcggcatagaaagaacattggcaga
aactccgaggacga
gaattcagtggtacgttacagaagaaaaatataagctgcgccacaagttc
tcaaacagaacaggaaatcaggccatcagggaatccaggaagctggtgtt
tccaggacaacacctttagagcaaaaaaacatttagcctttcttgggtag
ccaatccaagcatctatttgcctcagcttgagtagacttcagatctcagc
tcttctccctggagactagtggatctcccgaagaaaacagatctgctaca
actaaaaatgaagaaaaggatgacagggcaagggtatcaacgaccaaata
ctggcaagtaatgatgtgagggaggaaggattgtactagctcatggctcg
agagtgagcaccatggtggcaggaaagctgccgctgtgaggccaggccca
tgggagaggagtgtgaacctgcttcctcacatgtcaatcatcaggaggca
cagagatagagaacccataagccttgaccgtatgaccatatgaccctgta
gccatatctctgccaactaagccccatgtcagaaagaaaggtagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagagagaaaaaagaaaga
tagaaagaatgaaagaaagaaagaaagaaagaaagaaagacagaaagaaa
gaagaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaatg
aaaggaaaggaaatgaaaggaaaggaaaaggaaagggaaaaaaggttttt
caacttcccggacagtatccctagctgaggaccaaatgttgtagcacagg
agtctataggagactttcacatccaaaacatttggcagcatgcaataccc
agagctgtgcttccctgcactgcgaggggacgtgcttcatatactggaag
atgacaatgcctataacatgggtactctaaactatgtttttacagttctg
aggtaactgctacacagggtatccatggggtacttgtcagagaacttggc
tacttttggttctttatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90325665_90326628
seq2: B6Ng01-068O19.b_46_1009 (reverse)

seq1  TCGTCCTCTGGAGTCTCTGCCACTGTTCTTTCTATGCCGCCTTCCTTCCC  50
      |||||||| ||||| ||||||| |||||||||||||||||||||| | ||
seq2  TCGTCCTC-GGAGTTTCTGCCAATGTTCTTTCTATGCCGCCTTCCATTCC  49

seq1  TGATGATCTGTCCCGAGTGCTCTCTGGAGCTCTTTAGTCTGCTTCTCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCTGTCCCGAGTGCTCTCTGGAGCTCTTTAGTCTGCTTCTCGTG  99

seq1  TGGTCCTGGACCAAATGCAAGGGAGGAAAGGGGAAGGCATCTCTTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGGACCAAATGCAAGGGAGGAAAGGGGAAGGCATCTCTTCCAGC  149

seq1  TTCCATCCCTCTCCATTTCCTCGTAGTGCAGCTGCCTCTGGTCCTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCTCTCCATTTCCTCGTAGTGCAGCTGCCTCTGGTCCTCTTCC  199

seq1  TTGTCCTCGATGTTTCTTTGGCTCTTGCTGCCAGCCCCTCCCTGCCAC-A  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGTCCTCGATGTTTCTTTGGCTCTTGCTGCCAGCCCCTCCCTGCCACAA  249

seq1  AGGGACTGTACCTCAAACTGTGAGCCAAAGCCAACCTTCCTTTCTTTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGTACCTCAAACTGTGAGCCAAAGCCAACCTTCCTTTCTTTAAG  299

seq1  TTGCTTTTGTCTCAGCACTGGGATGGTAGAGGAGGAGGAAGATCATAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGTCTCAGCACTGGGATGGTAGAGGAGGAGGAAGATCATAAGT  349

seq1  TTGAGACCAGCCTGGGTTCCATAGAGATTTCCAGGCCAGTCTACACTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCAGCCTGGGTTCCATAGAGATTTCCAGGCCAGTCTACACTAGA  399

seq1  TAGCAATACCCTACATCAAAACAACATAAACAGCACAGAAAAATCAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATACCCTACATCAAAACAACATAAACAGCACAGAAAAATCAAAAT  449

seq1  CTGAAAACCAGCCATCCCCTTACAGCTGGACTTATTTGAAGGGAAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACCAGCCATCCCCTTACAGCTGGACTTATTTGAAGGGAAAATAA  499

seq1  ACATTAAATGGTGTTTACAACAGAGACAAACAGTAACCTTAATACTCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATGGTGTTTACAACAGAGACAAACAGTAACCTTAATACTCCAT  549

seq1  GAAGCAACTCTTTGACAATGTCATGTGCACGCTTGTGTGCACATGTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACTCTTTGACAATGTCATGTGCACGCTTGTGTGCACATGTGTGT  599

seq1  AAATGTGTGTGTATTGTATATGCATATATGTAAATGTATAATATGTATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGTGTATTGTATATGCATATATGTAAATGTATAATATGTATGT  649

seq1  GTGAGCTATATATCGTGTATTTATTTTGCTCTCTCCACTGAGTCCCTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTATATATCGTGTATTTATTTTGCTCTCTCCACTGAGTCCCTTCT  699

seq1  TACCCACAAGTCACCCTCCTACCTTCATGACTTTATTTATTTATTAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAAGTCACCCTCCTACCTTCATGACTTTATTTATTTATTAATTA  749

seq1  TTATTATTATTATTTTGATTATATGTAAGTACACTGTAGCTGACTTCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTTTGATTATATGTAAGTACACTGTAGCTGACTTCAGA  799

seq1  CACACCAGAAGAGGGAGTCAGATCTCATTACAGGTGGTTGTAAGCCACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAAGAGGGAGTCAGATCTCATTACAGGTGGTTGTAAGCCACCA  849

seq1  TATGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCT  899

seq1  CTTAGCTGCTGAGCCATCTCACCAGCCCCCTTGATGACTTTTTATTTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGCTGAGCCATCTCACCAGCCCCCTTGATGACTTTTTATTTTGG  949

seq1  TGACACAATGAATTC  964
      |||||||||||||||
seq2  TGACACAATGAATTC  964

seq1: chr16_90169050_90170081
seq2: B6Ng01-068O19.g_73_1091

seq1  GAATTCAGTGGTACGTTACAGAAGAAAAATATAAGCTGCGCCACAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTACGTTACAGAAGAAAAATATAAGCTGCGCCACAAGTTC  50

seq1  TCAAACAGAACAGGAAATCAGGCCATCAGGGAATCCAGGAAGCTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAACAGGAAATCAGGCCATCAGGGAATCCAGGAAGCTGGTGTT  100

seq1  TCCAGGACAACACCTTTAGAGCAAAAAAACATTTAGCCTTTCTTGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAACACCTTTAGAGCAAAAAAACATTTAGCCTTTCTTGGGTAG  150

seq1  CCAATCCAAGCATCTATTTGCCTCAGCTTGAGTAGACTTCAGATCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCAAGCATCTATTTGCCTCAGCTTGAGTAGACTTCAGATCTCAGC  200

seq1  TCTTCTCCCTGGAGACTAGTGGATCTCCCGAAGAAAACAGATCTGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCTGGAGACTAGTGGATCTCCCGAAGAAAACAGATCTGCTACA  250

seq1  ACTAAAAATGAAGAAAAGGATGACAGGGCAAGGGTATCAACGACCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATGAAGAAAAGGATGACAGGGCAAGGGTATCAACGACCAAATA  300

seq1  CTGGCAAGTAATGATGTGAGGGAGGAAGGATTGTACTAGCTCATGGCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGTAATGATGTGAGGGAGGAAGGATTGTACTAGCTCATGGCTCG  350

seq1  AGAGTGAGCACCATGGTGGCAGGAAAGCTGCCGCTGTGAGGCCAGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCACCATGGTGGCAGGAAAGCTGCCGCTGTGAGGCCAGGCCCA  400

seq1  TGGGAGAGGAGTGTGAACCTGCTTCCTCACATGTCAATCATCAGGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGAGTGTGAACCTGCTTCCTCACATGTCAATCATCAGGAGGCA  450

seq1  CAGAGATAGAGAACCCATAAGCCTTGACCGTATGACCATATGACCCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGAGAACCCATAAGCCTTGACCGTATGACCATATGACCCTGTA  500

seq1  GCCATATCTCTGCCAACTAAGCCCCATGTCAGAAAGAAAGGAAGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCATATCTCTGCCAACTAAGCCCCATGTCAGAAAGAAAGGTAGAAAGAA  550

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAAAAGAAAGA  600
      |||||||||||||||||||||||||||||||||||||||||    |||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAA----AAAGA  596

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  650
      |||| |||||||| |||||||||||||||||||||||||||||| |||||
seq2  AAGATAGAAAGAATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAA  646

seq1  GAAAGAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG-A  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAGAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  696

seq1  AAGGAAAGGAAAGGAAAGGAAAGGAAAGG-AAAGGAAAGGGAAAAAAGGT  748
      || |||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  AATGAAAGGAAAGGAAATGAAAGGAAAGGAAAAGGAAAGGGAAAAAAGGT  746

seq1  TTTACAACTTCCCGGAACAGTATCCCTAGCTGAGGACCAAATGTTGGAGC  798
      ||| ||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TTTTCAACTTCCCGG-ACAGTATCCCTAGCTGAGGACCAAATGTTGTAGC  795

seq1  ACAGGAGCCTATAGGAGACTTTTCACATCCAAAACATATGGCAGCAGGCA  848
      ||||||| ||||||||||| ||||||||||||||||| |||||||| |||
seq2  ACAGGAGTCTATAGGAGAC-TTTCACATCCAAAACATTTGGCAGCATGCA  844

seq1  AAACCAAGAGCTGTGCATCCCTGCACTGCGAGGGGGACGTGCATCATAGT  898
      | ||| |||||||||| |||||||||||||| |||||||||| ||||| |
seq2  ATACCCAGAGCTGTGCTTCCCTGCACTGCGA-GGGGACGTGCTTCATA-T  892

seq1  ACTGACAGATGACAATGCCAATAACATGGGTACTCTAAAACTATGTTTTT  948
      ||||  ||||||||||||| |||||||||||||||| |||||||||||||
seq2  ACTGGAAGATGACAATGCCTATAACATGGGTACTCT-AAACTATGTTTTT  941

seq1  ACTGTTCCTAGAGGTAACTGCTTACACAGGGTATCCAATGGGTCACCAGT  998
      || ||||   ||||||||||| |||||||||||||| |||||  ||  ||
seq2  ACAGTTC--TGAGGTAACTGC-TACACAGGGTATCC-ATGGGGTACTTGT  987

seq1  CAGAGAGACCTTGGCCATCTTTGGTTCTTTATAC  1032
      |  ||||| |||||| |  |||||||||||||||
seq2  C--AGAGAACTTGGCTACTTTTGGTTCTTTATAC  1019