BAC Information

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BAC

Clone NameB6Ng01-069C23
Chromosome16 (Build37)
Map Location 90,627,101 - 90,792,337
singlet/doubletdoublet
Overlap gene2610039C10Rik, Mrap, 4921511H13Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C23.bB6Ng01-069C23.g
ACCDH887566DH887567
length1,0841,086
definitionDH887566|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C23, 5' end.DH887567|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,791,244 - 90,792,337)(90,627,101 - 90,628,193)
sequence
gaattcaagcaggtcaggaagcaggaggtgatgcagaggccatggaggga
tgttccttactggttggcttcccctggcttgctcagcctgctctcttata
aaacccaggaaaccagtccagggatggcaccacccacaaggggacctctg
cactcgatcactaattgaaaaaatgccccacagctggatctcatggaggc
atttcctcaactgaaactcctttctctgtgataactccatctgtgtcagg
ttgacacacaaaaccagccagtacacacagtcatgcctggtattttgcat
ccagtgctcttgcttactgaggcagctctggaaatctgaagtttgaaatg
ctctaagatatgaaacttgaacatcatattggtgttcagagagttgtgga
tcttggatttgtagatcatacttaactataaatgaatcaagtagaactat
agtagtggcacctagtgtggcttagcttcctctgatttatggtcttcagt
tggggacatttccatgatggttggcttctgcctcagactggccgttgact
cgtggttttcttagagcacctgtgaacgcagcctcctaaggcctgtgaga
agcgctcgccttggccgtgcatagaaaagccgccctgtgccagcctgtcc
tggagctgcttctattgctctccagccctatgctgctgaaggggcgcttg
tgtgatgttatagactggcttgaattcttacggtgtagcttggttactgt
gtgtctagtattctcatggaggtccagctttgacatcctagcagtttgtg
tagtgatatatagtggatttgggggacttacacatagtatttcttccatc
cgtaactcagtctctctcttccttttgtagatctatgaggcccagccaga
gattccccggccttttggaccagagagtttatcccattgccaagctcctg
gcgatggtgatggtgaccccattgcctcttggtgtgcataagtcatgtcc
ttcagcattaaatgtaagtcccgagtaagagagacgactcagtcagtggt
taaaaggcctgctcttccaaggaaaagttcagtt
gaattcaaacatctaggatggaacccccaactacagaaagatttaaacta
gttaattattgtgtcatctatttaggtgaccgacagatcacggtgtaaaa
ggattgtgaactttataaagaactggtcaatcccgggcatcgtaccacaa
acacttatcatctcagcaccttagggggtgaaggcatgaggttcacaagt
tcaaagccagacttggctacatattgaggttaaggccagcctagactaca
tgacactctgtttcaaaagccgcgaagaaaagaaaagcctaatacatcct
ggataacgagagtgaggatgcattacattggggttgttagatgtttgctg
ccaaacctaatggcctgagttcgattcccaggacccacatatgggaggtg
agaactgagtcttttgaaagttgtcttctcatttctacaaatgtacctgg
gcacattcatatccctacacatacaagcaaacaaataaacaactgtattt
caaagagaaatgtaacataccttttacaagatggttgagcagcaggtatt
caaaggattataagtcaacaatgactcgtctaatccagaaaattcttcag
gacgtgcccagagatttttctcctagtgatcctagatacggtcaagttga
tcacataaacccttattttgtactcactacaacattaaaaaaaatcgttg
ttctatggggctggagagatggtccagtggttaagagtggtggctgctct
tccagaggtcctgagttcaattcccagccacacagtggctcacagccatc
tgtaatgggatctgatgccctcttctggtgtgtctgaagacagcgtcatg
tattcaaatatataaaaattagtaaatctttaaaaaacaaacaaacccca
ccccacacagggtgtcagccactgagtattcaatctttagtatttagtcc
tatctctttttggagtcttttattttgctaagacaggttttttttttttg
gttagatcattggataacgaagtagagagatttatgggattcgaaacctg
atgttgggcaacccgttttgacaagaggacttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90791244_90792337
seq2: B6Ng01-069C23.b_49_1132 (reverse)

seq1  AACTGAACTTATCTCCTCTGGAAGAGCCAGGCCTCTTAACCACTGACTGA  50
      |||||||||  | |||| |||||||| ||||||| |||||||||||||||
seq2  AACTGAACT--TTTCCT-TGGAAGAG-CAGGCCTTTTAACCACTGACTGA  46

seq1  GTCGTCTCTCTTTCTCTGTGACTTACATTTAATGCCTGAGTGAACATGAT  100
      |||||||||||| ||| | ||||||||||||||| ||||  | |||||| 
seq2  GTCGTCTCTCTTACTC-GGGACTTACATTTAATG-CTGA-AGGACATGA-  92

seq1  CTTATTGCACACC-AGAGGCACTGTGGTCACCATCACCATCGCCAGGAGC  149
      |||| |||||||| ||||||| || |||||||||||||||||||||||| 
seq2  CTTA-TGCACACCAAGAGGCAATGGGGTCACCATCACCATCGCCAGGAG-  140

seq1  CTTGGCAATGGGATAAACTCTCTGGTCCAAAAGGCCGGGGAAATCTCTGG  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGGCAATGGGATAAACTCTCTGGTCCAAAAGGCCGGGG-AATCTCTGG  189

seq1  CTGGGCCTCATAGATCTACAAAAGGAAGAGAGAGACTGAGTTACGGATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCATAGATCTACAAAAGGAAGAGAGAGACTGAGTTACGGATGG  239

seq1  AAGAAATACTATGTGTAAGTCCCCCAAATCCACTATATATCACTACACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATACTATGTGTAAGTCCCCCAAATCCACTATATATCACTACACAA  289

seq1  ACTGCTAGGATGTCAAAGCTGGACCTCCATGAGAATACTAGACACACAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGGATGTCAAAGCTGGACCTCCATGAGAATACTAGACACACAGT  339

seq1  AACCAAGCTACACCGTAAGAATTCAAGCCAGTCTATAACATCACACAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCTACACCGTAAGAATTCAAGCCAGTCTATAACATCACACAAGC  389

seq1  GCCCCTTCAGCAGCATAGGGCTGGAGAGCAATAGAAGCAGCTCCAGGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCAGCAGCATAGGGCTGGAGAGCAATAGAAGCAGCTCCAGGACA  439

seq1  GGCTGGCACAGGGCGGCTTTTCTATGCACGGCCAAGGCGAGCGCTTCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCACAGGGCGGCTTTTCTATGCACGGCCAAGGCGAGCGCTTCTCA  489

seq1  CAGGCCTTAGGAGGCTGCGTTCACAGGTGCTCTAAGAAAACCACGAGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTAGGAGGCTGCGTTCACAGGTGCTCTAAGAAAACCACGAGTCA  539

seq1  ACGGCCAGTCTGAGGCAGAAGCCAACCATCATGGAAATGTCCCCAACTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAGTCTGAGGCAGAAGCCAACCATCATGGAAATGTCCCCAACTGA  589

seq1  AGACCATAAATCAGAGGAAGCTAAGCCACACTAGGTGCCACTACTATAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAAATCAGAGGAAGCTAAGCCACACTAGGTGCCACTACTATAGT  639

seq1  TCTACTTGATTCATTTATAGTTAAGTATGATCTACAAATCCAAGATCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTGATTCATTTATAGTTAAGTATGATCTACAAATCCAAGATCCAC  689

seq1  AACTCTCTGAACACCAATATGATGTTCAAGTTTCATATCTTAGAGCATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTGAACACCAATATGATGTTCAAGTTTCATATCTTAGAGCATTT  739

seq1  CAAACTTCAGATTTCCAGAGCTGCCTCAGTAAGCAAGAGCACTGGATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCAGATTTCCAGAGCTGCCTCAGTAAGCAAGAGCACTGGATGCA  789

seq1  AAATACCAGGCATGACTGTGTGTACTGGCTGGTTTTGTGTGTCAACCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAGGCATGACTGTGTGTACTGGCTGGTTTTGTGTGTCAACCTGA  839

seq1  CACAGATGGAGTTATCACAGAGAAAGGAGTTTCAGTTGAGGAAATGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGGAGTTATCACAGAGAAAGGAGTTTCAGTTGAGGAAATGCCTC  889

seq1  CATGAGATCCAGCTGTGGGGCATTTTTTCAATTAGTGATCGAGTGCAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATCCAGCTGTGGGGCATTTTTTCAATTAGTGATCGAGTGCAGAG  939

seq1  GTCCCCTTGTGGGTGGTGCCATCCCTGGACTGGTTTCCTGGGTTTTATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTGTGGGTGGTGCCATCCCTGGACTGGTTTCCTGGGTTTTATAA  989

seq1  GAGAGCAGGCTGAGCAAGCCAGGGGAAGCCAACCAGTAAGGAACATCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGCTGAGCAAGCCAGGGGAAGCCAACCAGTAAGGAACATCCCT  1039

seq1  CCATGGCCTCTGCATCACCTCCTGCTTCCTGACCTGCTTGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCTCTGCATCACCTCCTGCTTCCTGACCTGCTTGAATTC  1084

seq1: chr16_90627101_90628193
seq2: B6Ng01-069C23.g_67_1152

seq1  GAATTCAAACATCTAGGATGGAACCCCCAACTACAGAAAGATTTAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATCTAGGATGGAACCCCCAACTACAGAAAGATTTAAACTA  50

seq1  GTTAATTATTGTGTCATCTATTTAGGTGACCGACAGATCACGGTGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTATTGTGTCATCTATTTAGGTGACCGACAGATCACGGTGTAAAA  100

seq1  GGATTGTGAACTTTATAAAGAACTGGTCAATCCCGGGCATCGTACCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGAACTTTATAAAGAACTGGTCAATCCCGGGCATCGTACCACAA  150

seq1  ACACTTATCATCTCAGCACCTTAGGGGGTGAAGGCATGAGGTTCACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATCATCTCAGCACCTTAGGGGGTGAAGGCATGAGGTTCACAAGT  200

seq1  TCAAAGCCAGACTTGGCTACATATTGAGGTTAAGGCCAGCCTAGACTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAGACTTGGCTACATATTGAGGTTAAGGCCAGCCTAGACTACA  250

seq1  TGACACTCTGTTTCAAAAGCCGCGAAGAAAAGAAAAGCCTAATACATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCTGTTTCAAAAGCCGCGAAGAAAAGAAAAGCCTAATACATCCT  300

seq1  GGATAACGAGAGTGAGGATGCATTACATTGGGGTTGTTAGATGTTTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACGAGAGTGAGGATGCATTACATTGGGGTTGTTAGATGTTTGCTG  350

seq1  CCAAACCTAATGGCCTGAGTTCGATTCCCAGGACCCACATATGGGAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTAATGGCCTGAGTTCGATTCCCAGGACCCACATATGGGAGGTG  400

seq1  AGAACTGAGTCTTTTGAAAGTTGTCTTCTCATTTCTACAAATGTACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGTCTTTTGAAAGTTGTCTTCTCATTTCTACAAATGTACCTGG  450

seq1  GCACATTCATATCCCTACACATACAAGCAAACAAATAAACAACTGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCATATCCCTACACATACAAGCAAACAAATAAACAACTGTATTT  500

seq1  CAAAGAGAAATGTAACATACCTTTTACAAGATGGTTGAGCAGCAGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAATGTAACATACCTTTTACAAGATGGTTGAGCAGCAGGTATT  550

seq1  CAAAGGATTATAAGTCAACAATGACTCGTCTAATCCAGAAAATTCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTATAAGTCAACAATGACTCGTCTAATCCAGAAAATTCTTCAG  600

seq1  GACGTGCCCAGAGATTTTTCTCCTAGTGATCCTAGATACGGTCAAGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCCCAGAGATTTTTCTCCTAGTGATCCTAGATACGGTCAAGTTGA  650

seq1  TCACATAAACCCTTATTTTGTACTCACTACAACATTAAAAAAAATCGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAACCCTTATTTTGTACTCACTACAACATTAAAAAAAATCGTTG  700

seq1  TTCTAT-GGGCTGGAGAGATGGTCCAGTGGTTAAGAGTGGTGGCTGCTCT  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGGGCTGGAGAGATGGTCCAGTGGTTAAGAGTGGTGGCTGCTCT  750

seq1  TCCAGAGGTCCTGAGTTCAATTCCCAGCCACACAGTGGCTCACAGCCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCTGAGTTCAATTCCCAGCCACACAGTGGCTCACAGCCATC  800

seq1  TGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGTCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGTC-AT  849

seq1  GTATTCAAATATATAAAAATAAGTAAATCTTTAAAAAAACAAACAAACCC  899
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTATTCAAATATATAAAAATTAGTAAATCTTT-AAAAAACAAACAAACCC  898

seq1  CACCCCACACAGGGTGTCAGGCAACTGAAGTATTCAATCTTTAAGTATTT  949
      ||||||||||||||||||| || |||| |||||||||||||| |||||||
seq2  CACCCCACACAGGGTGTCA-GCCACTG-AGTATTCAATCTTT-AGTATTT  945

seq1  AGT-CTATCTCTTTTTGGAGTCTTTTTATTTTGTCTAAGGACAAGTTTTT  998
      ||| |||||||||||||||||| |||||||||| |||| |||| ||||||
seq2  AGTCCTATCTCTTTTTGGAGTC-TTTTATTTTG-CTAA-GACAGGTTTTT  992

seq1  TATTTTATGGTAAGATCATT-GATAACAGAGGTAGAGAGATTTATGGAAT  1047
      | |||| |||| |||||||| |||||| || |||||||||||||||| ||
seq2  T-TTTTTTGGTTAGATCATTGGATAAC-GAAGTAGAGAGATTTATGGGAT  1040

seq1  CAGAAAACTGATGTTGGGCAAACCGTTGTGACAAGAGGACTTCCTC  1093
        |||| |||||||||||||| ||||| ||||||||||||||||||
seq2  TCGAAACCTGATGTTGGGCAACCCGTTTTGACAAGAGGACTTCCTC  1086