BAC Information

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BAC

Clone NameB6Ng01-071A23
Chromosome16 (Build37)
Map Location 26,485,496 - 26,611,543
singlet/doubletdoublet
Overlap geneLOC100043057, Il1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A23.bB6Ng01-071A23.g
ACCDH888868DH888869
length1,0971,039
definitionDH888868|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A23, 5' end.DH888869|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,485,496 - 26,486,601)(26,610,504 - 26,611,543)
sequence
gaattctagcatccagtagtgactgctcatcacaatagaaagagtgggat
aaaactctgcaatgttttttacctctcccacgacacacattgaaacccac
cttttgccattgtacacttatatatgcattacaggaagatgtaacctaca
acagagttgagaatacagtttatttaaatattgtgttggaattaatttca
tgatgatcaaagaattgagaaaagcacaaaaagaggagcattttttattc
tggtgtcactctgtattttatgtgttagtctatcttcataggcaaagcat
gccagagcagagagtcttcatcctgaccaggaagcaaaaggtagaaggat
ccagaacaagatgccaaggacacactcccagggacacattctcaggacat
gccccaatgaccttccaacaactcatcatccaaattgggacactttgaca
ggaaaagtgaaggctgcttataagtgaggatgacatgggggcaggaaggg
ttgtcccttcatcagctgaacaatatcattgggaacattgaggtattttt
tgattgagtcaattcaaattattttatttcttaaattattattctttggt
tagcaggatcttcatgagctgcctcatatttttttatttatattcttgtt
attgatttttcaataatgttaatattgaagcacatacataaaaggatatg
ggcagataatcacactgtgcgttttcctgtgtagtcagtaagatagaacg
ttcgtcattctcttgtcgcagcagcagagtatttgaaaatatctatgtgt
tggcagggttcgttttgactttcagtttcaatccctctttgtgtggcaag
tttcctggggcacaaggcaattgcactatctacctttctccttttttacc
tatacagtaagcctgcccaaattgaaggcaaggtttccctcccaatgaat
cctctcaaaaaacatccttatagcacacccagagtgggcctcatgatgtc
tttggttcttctcagtctggtctagttttcatgaagataaaacatcagaa
ctcagaagtgacatcacccacaggggttctgaccctgcattacctct
gaattctgttctttgaattccaaggatgagcacctcttggagctgcccat
catatcaatgctcagttactaccttctgctctaggtagcattgccagtgc
gtataggagttgacaggacattccttatgccgtggggccataaaaagcag
gtttgatcaatttataaaataaatccacttccatggaagaaagaagtagt
tttagaacacagttgtcttcatacataagcacattgaaatcccctcaggc
ttccaagagactgtcatttaatattgtgactcttctatggaaccagtgat
ttccccaaagttccacggatgataaatggggaggcctgtgctcaaaccca
aacacctacacagaaaagcttgcgaagcttcatcccaagggagtgttccc
tgtttgctcttctaattactttaaaggtgggtgttaaagacaggaaatga
caaagacaccattttcaacctgaatttgaatgtctagctttggcttaaca
agccaggttaagcttcatcatgtcccagggaaaatcccacgttgcctcat
gccattgatttgccactgtctccaacaaaaggacctgcatgcctgcagag
gccctgggaattttaaataagaagtcaatgagagatgctggtaagtggtc
tgaaattgtctaggggcagaggaaaccttgctggaataacaatcatatca
atataccagctacatgaatgatcctgccgtgaattacaacagaatcctca
cactccatagcctagggtggcagatctgcataattaatctcactctgcag
taactctgcagggtcatcagccttgatattccacagtcaaaattaatgtc
ttattatttctctcctctttggtgtttcttgagatacatgaaaataatat
tacacataggaaaataatatcagatgtagcagctttgttacacaaatggc
atggtagagggtcactgaactatataaattagaaatactcatccaagcgg
aaagacacagaaccaaatgtgtgtgtgttttgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26485496_26486601
seq2: B6Ng01-071A23.b_34_1130

seq1  GAATTCTAGCATCCAGTAGTGACTGCTCATCACAATAGAAAGAGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCATCCAGTAGTGACTGCTCATCACAATAGAAAGAGTGGGAT  50

seq1  AAAACTCTGCAATGTTTTTTACCTCTCCCACGACACACATTGAAACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGCAATGTTTTTTACCTCTCCCACGACACACATTGAAACCCAC  100

seq1  CTTTTGCCATTGTACACTTATATATGCATTACAGGAAGATGTAACCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCATTGTACACTTATATATGCATTACAGGAAGATGTAACCTACA  150

seq1  ACAGAGTTGAGAATACAGTTTATTTAAATATTGTGTTGGAATTAATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTGAGAATACAGTTTATTTAAATATTGTGTTGGAATTAATTTCA  200

seq1  TGATGATCAAAGAATTGAGAAAAGCACAAAAAGAGGAGCATTTTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCAAAGAATTGAGAAAAGCACAAAAAGAGGAGCATTTTTTATTC  250

seq1  TGGTGTCACTCTGTATTTTATGTGTTAGTCTATCTTCATAGGCAAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCACTCTGTATTTTATGTGTTAGTCTATCTTCATAGGCAAAGCAT  300

seq1  GCCAGAGCAGAGAGTCTTCATCCTGACCAGGAAGCAAAAGGTAGAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCAGAGAGTCTTCATCCTGACCAGGAAGCAAAAGGTAGAAGGAT  350

seq1  CCAGAACAAGATGCCAAGGACACACTCCCAGGGACACATTCTCAGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAAGATGCCAAGGACACACTCCCAGGGACACATTCTCAGGACAT  400

seq1  GCCCCAATGACCTTCCAACAACTCATCATCCAAATTGGGACACTTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATGACCTTCCAACAACTCATCATCCAAATTGGGACACTTTGACA  450

seq1  GGAAAAGTGAAGGCTGCTTATAAGTGAGGATGACATGGGGGCAGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTGAAGGCTGCTTATAAGTGAGGATGACATGGGGGCAGGAAGGG  500

seq1  TTGTCCCTTCATCAGCTGAACAATATCATTGGGAACATTGAGGTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTTCATCAGCTGAACAATATCATTGGGAACATTGAGGTATTTTT  550

seq1  TGATTGAGTCAATTCAAATTATTTTATTTCTTAAATTATTATTCTTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGTCAATTCAAATTATTTTATTTCTTAAATTATTATTCTTTGGT  600

seq1  TAGCAGGATCTTCATGAGCTGCCTCATATTTTTTTATTTATATTCTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGATCTTCATGAGCTGCCTCATATTTTTTTATTTATATTCTTGTT  650

seq1  ATTGATTTTTCAATAATGTTAATATTGAAGCACATACATAAAAGGATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTTCAATAATGTTAATATTGAAGCACATACATAAAAGGATATG  700

seq1  GGCAGATAATCACACTGTGCGTTTTCCTGTGTAGTCAGTAAGATAGAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAATCACACTGTGCGTTTTCCTGTGTAGTCAGTAAGATAGAACG  750

seq1  TTCGTCATTCTCTTGTCGCAGCAGCAGAGTATTTGAAAATATCTATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCATTCTCTTGTCGCAGCAGCAGAGTATTTGAAAATATCTATGTGT  800

seq1  TGGCAGGGTTCGTTTTGACTTTCAGTTTCAATCCCTCTTTGTGTGGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTTCGTTTTGACTTTCAGTTTCAATCCCTCTTTGTGTGGCAAG  850

seq1  TTTCCTGGGGCACAAGGCAATTGCACTATCTACCTTTCTCCTTTTTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGGCACAAGGCAATTGCACTATCTACCTTTCTCCTTTTTTACC  900

seq1  TATACAGTAAGCCTGCCCAAATTGAAGGCAAGGTTTCCCTCCCAATGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTAAGCCTGCCCAAATTGAAGGCAAGGTTTCCCTCCCAATGAAT  950

seq1  CCTCTCAAAAAAACATCCTTATAGGCACACCCAGAGGTGGGCCTCATGAT  1000
      |||||| |||||||||||||||| ||||||||||| ||||||||||||||
seq2  CCTCTC-AAAAAACATCCTTATA-GCACACCCAGA-GTGGGCCTCATGAT  997

seq1  GTCTTTGGTTCTTCTCAGTCTGGTCTAGTTTTCAATGAAGATAAAACATC  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCTTTGGTTCTTCTCAGTCTGGTCTAGTTTTC-ATGAAGATAAAACATC  1046

seq1  AAGAACCCAAGAAGTGACAATCACCCAACAAGGGGTTCTGACTCTGCATT  1100
       ||||| | ||||||||| ||||||||   |||||||||||| |||||||
seq2  -AGAACTC-AGAAGTGAC-ATCACCCA--CAGGGGTTCTGACCCTGCATT  1091

seq1  ACCTCT  1106
      ||||||
seq2  ACCTCT  1097

seq1: chr16_26610504_26611543
seq2: B6Ng01-071A23.g_64_1102 (reverse)

seq1  ACACACAC-ACACACACACACATTTGGTTCTGTGTCTTTCCGCTTGGATT  49
      |||||||| | ||||||||||||||||||||||||||||||||||||| |
seq2  ACACACACAAAACACACACACATTTGGTTCTGTGTCTTTCCGCTTGGA-T  49

seq1  GAGTATTTCTAATTTATATAGTTCAGTGACCCTCTACCATGCCATTTGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTCTAATTTATATAGTTCAGTGACCCTCTACCATGCCATTTGTG  99

seq1  TTAACAAAGCTGCTACATCTGATATTATTTTCCTATGTGTAATATTATTT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAACAAAGCTGCTACATCTGATATTATTTTCCTATGTGTAATATTATTT  148

seq1  TCATGTATCTCAAGAAACACCAAAGAGGAGAGAAATAATAAGACATTAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATCTCAAGAAACACCAAAGAGGAGAGAAATAATAAGACATTAAT  198

seq1  TTTGACTGTGGAATATCAAGGCTGATGACCCTGCAGAGTTACTGCAGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTGGAATATCAAGGCTGATGACCCTGCAGAGTTACTGCAGAGT  248

seq1  GAGATTAATTATGCAGATCTGCCACCCTAGGCTATGGAGTGTGAGGATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAATTATGCAGATCTGCCACCCTAGGCTATGGAGTGTGAGGATTC  298

seq1  TGTTGTAATTCACGGCAGGATCATTCATGTAGCTGGTATATTGATATGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATTCACGGCAGGATCATTCATGTAGCTGGTATATTGATATGAT  348

seq1  TGTTATTCCAGCAAGGTTTCCTCTGCCCCTAGACAATTTCAGACCACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCCAGCAAGGTTTCCTCTGCCCCTAGACAATTTCAGACCACTTA  398

seq1  CCAGCATCTCTCATTGACTTCTTATTTAAAATTCCCAGGGCCTCTGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTCTCATTGACTTCTTATTTAAAATTCCCAGGGCCTCTGCAGG  448

seq1  CATGCAGGTCCTTTTGTTGGAGACAGTGGCAAATCAATGGCATGAGGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTCCTTTTGTTGGAGACAGTGGCAAATCAATGGCATGAGGCAA  498

seq1  CGTGGGATTTTCCCTGGGACATGATGAAGCTTAACCTGGCTTGTTAAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGATTTTCCCTGGGACATGATGAAGCTTAACCTGGCTTGTTAAGCC  548

seq1  AAAGCTAGACATTCAAATTCAGGTTGAAAATGGTGTCTTTGTCATTTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGACATTCAAATTCAGGTTGAAAATGGTGTCTTTGTCATTTCCT  598

seq1  GTCTTTAACACCCACCTTTAAAGTAATTAGAAGAGCAAACAGGGAACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAACACCCACCTTTAAAGTAATTAGAAGAGCAAACAGGGAACACT  648

seq1  CCCTTGGGATGAAGCTTCGCAAGCTTTTCTGTGTAGGTGTTTGGGTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGATGAAGCTTCGCAAGCTTTTCTGTGTAGGTGTTTGGGTTTGA  698

seq1  GCACAGGCCTCCCCATTTATCATCCGTGGAACTTTGGGGAAATCACTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCCTCCCCATTTATCATCCGTGGAACTTTGGGGAAATCACTGGT  748

seq1  TCCATAGAAGAGTCACAATATTAAATGACAGTCTCTTGGAAGCCTGAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAAGAGTCACAATATTAAATGACAGTCTCTTGGAAGCCTGAGGG  798

seq1  GATTTCAATGTGCTTATGTATGAAGACAACTGTGTTCTAAAACTACTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAATGTGCTTATGTATGAAGACAACTGTGTTCTAAAACTACTTCT  848

seq1  TTCTTCCATGGAAGTGGATTTATTTTATAAATTGATCAAACCTGCTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATGGAAGTGGATTTATTTTATAAATTGATCAAACCTGCTTTTT  898

seq1  ATGGCCCCACGGCATAAGGAATGTCCTGTCAACTCCTATACGCACTGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCACGGCATAAGGAATGTCCTGTCAACTCCTATACGCACTGGCA  948

seq1  ATGCTACCTAGAGCAGAAGGTAGTAACTGAGCATTGATATGATGGGCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCTAGAGCAGAAGGTAGTAACTGAGCATTGATATGATGGGCAGC  998

seq1  TCCAAGAGGTGCTCATCCTTGGAATTCAAAGAACAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGGTGCTCATCCTTGGAATTCAAAGAACAGAATTC  1039