BAC Information

Click to search

BAC

Clone NameB6Ng01-071H04
Chromosome16 (Build37)
Map Location 38,208,002 - 38,274,451
singlet/doubletdoublet
Overlap geneGsk3b, Nr1i2
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713
Downstream gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H04.bB6Ng01-071H04.g
ACCDH889146DH889147
length1,056808
definitionDH889146|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H04, 5' end.DH889147|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,208,002 - 38,209,064)(38,273,644 - 38,274,451)
sequence
gaattcattaattagcaaaaccaatgcatcaatatatgggtagatagaaa
gatgacaatatttttttttctctgtataggtcctaggaacaccaacaagg
gagcaaattagagaaatgaacccaaattatacagaattcaaattccctca
aatcaaggcacatccttggacaaaggtgagtgaaaatgaatttgagaaag
tccaccaactaatagttaagtaaatctcggggttttcattgtacttaagt
tgaacaattagagagaccttatgtcaattacaaactcagcagttctctgt
gaaggtggctcagcggctgcagctcagtgtgtactgatggtgtgctatta
ttcctgtggatgacttgtagatacttgccagcctgggctttcatttgcaa
gtaggaaccaagtatccatgacattaaaatcgggtaggacttttaaaacc
taaggttctacatttcctaatttaaatagaaatgcataatacaatattat
cacaaataaaatacctttacatatttttattcttttaaactatcagaaca
aacctttttatagtcgtgtatgtttttcttgtgtactgtcctgttggttc
ttcagaagcagtattcagaatgtttattagatgttactaaccattggaaa
ggcctagtcagaaggccttccaccctggactgtgttatgaggttaactgc
aatgaggaaaaaagaagaagaatgtgttagtatttacagatggagttcat
ttgtagcagacattttttaaatagatttagaaactctagccaaagttagg
aatccagtgatgtaggcagctatcacagtctggtgttacgctaacacttg
ttcttgtgtgcacacgagtgtgtctgatgctggatctttacagtcatggt
caggtgcctcgcatcattcacagaggtagggaagtaggtaggtaggtaat
gatatcataagttagaagcagtcaccctttaaatatgtagttcaataaga
cgctatttaaatgtcacatgacgttgatagttcgtctagttgactgtaaa
gtttag
gaattcactttgtgactttggtatggggcgcccatcctatgttttatatt
cacttgagtctttgcttgatgctaacctttgactggttaggctcagctgt
gttttttgaacttcagtcttggggttgtttgatactttataggagagggg
tacccagattggatagaggaagttgtgtcctctgacctcacaagtgggta
ctctgtgtgagttgggcagagactggtatgggttgtcagggttagactgg
tatgggttgctaggcatgtaaagttgtagcctctgacctgtgtagctgtc
cagcagccatggagaagcgggtatgcctggaaggagagcaagggatagaa
ttaggatgggcagacgagagaaataacgaacaagccaagacaaagtttct
atgatcatggctcaagttttaatttttcaactctgcgtttatataggcga
aacccaaaaacccatccccttgtttctgctggattgagttgcaaagtaag
ctcagcgggcgggcaggatgattaaatgtagtgaggccaggcacctgact
ccagtcgcagacttgtttagtcaactcaaggctggggaagggcacgggcc
tgggatgtgacccagtgttttaagcaggtcctgaattgctgggagctgag
acacaggtagagcctctaatatgaggagtaggccattatgccacactacc
taggagggcagagatgtgggtgggaaaggacaatgaggtatgtatgacct
ctgacctagggagtagaaagtgctctgcacaggtgatgggaaggttgggg
tgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38208002_38209064
seq2: B6Ng01-071H04.b_41_1096

seq1  GAATTCATTAATTAGCAAAACCAATGCATCAATATATGGGTAGATAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTAGCAAAACCAATGCATCAATATATGGGTAGATAGAAA  50

seq1  GATGACAATATTTTTTTTTCTCTGTATAGGTCCTAGGAACACCAACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAATATTTTTTTTTCTCTGTATAGGTCCTAGGAACACCAACAAGG  100

seq1  GAGCAAATTAGAGAAATGAACCCAAATTATACAGAATTCAAATTCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATTAGAGAAATGAACCCAAATTATACAGAATTCAAATTCCCTCA  150

seq1  AATCAAGGCACATCCTTGGACAAAGGTGAGTGAAAATGAATTTGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGCACATCCTTGGACAAAGGTGAGTGAAAATGAATTTGAGAAAG  200

seq1  TCCACCAACTAATAGTTAAGTAAATCTCGGGGTTTTCATTGTACTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAACTAATAGTTAAGTAAATCTCGGGGTTTTCATTGTACTTAAGT  250

seq1  TGAACAATTAGAGAGACCTTATGTCAATTACAAACTCAGCAGTTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATTAGAGAGACCTTATGTCAATTACAAACTCAGCAGTTCTCTGT  300

seq1  GAAGGTGGCTCAGCGGCTGCAGCTCAGTGTGTACTGATGGTGTGCTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGCTCAGCGGCTGCAGCTCAGTGTGTACTGATGGTGTGCTATTA  350

seq1  TTCCTGTGGATGACTTGTAGATACTTGCCAGCCTGGGCTTTCATTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGATGACTTGTAGATACTTGCCAGCCTGGGCTTTCATTTGCAA  400

seq1  GTAGGAACCAAGTATCCATGACATTAAAATCGGGTAGGACTTTTAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAACCAAGTATCCATGACATTAAAATCGGGTAGGACTTTTAAAACC  450

seq1  TAAGGTTCTACATTTCCTAATTTAAATAGAAATGCATAATACAATATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCTACATTTCCTAATTTAAATAGAAATGCATAATACAATATTAT  500

seq1  CACAAATAAAATACCTTTACATATTTTTATTCTTTTAAACTATCAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAAAATACCTTTACATATTTTTATTCTTTTAAACTATCAGAACA  550

seq1  AACCTTTTTATAGTCGTGTATGTTTTTCTTGTGTACTGTCCTGTTGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTATAGTCGTGTATGTTTTTCTTGTGTACTGTCCTGTTGGTTC  600

seq1  TTCAGAAGCAGTATTCAGAATGTTTATTAGATGTTACTAACCATTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCAGTATTCAGAATGTTTATTAGATGTTACTAACCATTGGAAA  650

seq1  GGCCTAGTCAGAAGGCCTTCCACCCTGGACTGTGTTATGAGGTTAACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTCAGAAGGCCTTCCACCCTGGACTGTGTTATGAGGTTAACTGC  700

seq1  AATGAGGAAAAAAGAAGAAGAATGTGTTAGTATTTACAGATGGAGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAAAAAGAAGAAGAATGTGTTAGTATTTACAGATGGAGTTCAT  750

seq1  TTGTAGCAGACATTTTTTAAATAGATTTAGAAACTCTAGCCAAAGTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAGACATTTTTTAAATAGATTTAGAAACTCTAGCCAAAGTTAGG  800

seq1  AATCCAGTGATGTAGGCAGCTATCACAGTCTGGTGTTACGCTAACACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTGATGTAGGCAGCTATCACAGTCTGGTGTTACGCTAACACTTG  850

seq1  TTCTTGTGTGCACACGAGTGTGTCTGATGCTGGATCTTTACAGTCATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTGCACACGAGTGTGTCTGATGCTGGATCTTTACAGTCATGGT  900

seq1  CAGGTGCCTCGCATCATTCACAGAGGTAGGGAAGTAGGTAGGTAGGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTCGCATCATTCACAGAGGTAGGGAAGTAGGTAGGTAGGTAAT  950

seq1  GATATAATAAGTTAGAAGCAGTCAACCTTTAAATATGTAGTTCAAAGAAG  1000
      ||||| |||||||||||||||||| |||||||||||||||||| || |||
seq2  GATATCATAAGTTAGAAGCAGTCACCCTTTAAATATGTAGTTC-AATAAG  999

seq1  ACCCTATTTTAAAATGTCCACATGACATTGATTAGTTCGTTTAGTTGACT  1050
      || ||||||  |||||| |||||||| |||| |||||||| |||||||||
seq2  ACGCTATTT--AAATGT-CACATGACGTTGA-TAGTTCGTCTAGTTGACT  1045

seq1  GTAAAATGTTTAG  1063
      |||||  ||||||
seq2  GTAAA--GTTTAG  1056

seq1: chr16_38273644_38274451
seq2: B6Ng01-071H04.g_65_872 (reverse)

seq1  CACCCCCACCCCAACCTTCCCATCACCTGTGCAGAGCACTTTCTACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCCCAACCTTCCCATCACCTGTGCAGAGCACTTTCTACTCCC  50

seq1  TAGGTCAGAGGTCATACATACCTCATTGTCCTTTCCCACCCACATCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGAGGTCATACATACCTCATTGTCCTTTCCCACCCACATCTCTG  100

seq1  CCCTCCTAGGTAGTGTGGCATAATGGCCTACTCCTCATATTAGAGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAGGTAGTGTGGCATAATGGCCTACTCCTCATATTAGAGGCTCT  150

seq1  ACCTGTGTCTCAGCTCCCAGCAATTCAGGACCTGCTTAAAACACTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCTCAGCTCCCAGCAATTCAGGACCTGCTTAAAACACTGGGTC  200

seq1  ACATCCCAGGCCCGTGCCCTTCCCCAGCCTTGAGTTGACTAAACAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGGCCCGTGCCCTTCCCCAGCCTTGAGTTGACTAAACAAGTCT  250

seq1  GCGACTGGAGTCAGGTGCCTGGCCTCACTACATTTAATCATCCTGCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTGGAGTCAGGTGCCTGGCCTCACTACATTTAATCATCCTGCCCGC  300

seq1  CCGCTGAGCTTACTTTGCAACTCAATCCAGCAGAAACAAGGGGATGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGAGCTTACTTTGCAACTCAATCCAGCAGAAACAAGGGGATGGGTT  350

seq1  TTTGGGTTTCGCCTATATAAACGCAGAGTTGAAAAATTAAAACTTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCGCCTATATAAACGCAGAGTTGAAAAATTAAAACTTGAGCC  400

seq1  ATGATCATAGAAACTTTGTCTTGGCTTGTTCGTTATTTCTCTCGTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATAGAAACTTTGTCTTGGCTTGTTCGTTATTTCTCTCGTCTGCC  450

seq1  CATCCTAATTCTATCCCTTGCTCTCCTTCCAGGCATACCCGCTTCTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAATTCTATCCCTTGCTCTCCTTCCAGGCATACCCGCTTCTCCAT  500

seq1  GGCTGCTGGACAGCTACACAGGTCAGAGGCTACAACTTTACATGCCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGACAGCTACACAGGTCAGAGGCTACAACTTTACATGCCTAGC  550

seq1  AACCCATACCAGTCTAACCCTGACAACCCATACCAGTCTCTGCCCAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATACCAGTCTAACCCTGACAACCCATACCAGTCTCTGCCCAACTC  600

seq1  ACACAGAGTACCCACTTGTGAGGTCAGAGGACACAACTTCCTCTATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTACCCACTTGTGAGGTCAGAGGACACAACTTCCTCTATCCAA  650

seq1  TCTGGGTACCCCTCTCCTATAAAGTATCAAACAACCCCAAGACTGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTACCCCTCTCCTATAAAGTATCAAACAACCCCAAGACTGAAGTT  700

seq1  CAAAAAACACAGCTGAGCCTAACCAGTCAAAGGTTAGCATCAAGCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACACAGCTGAGCCTAACCAGTCAAAGGTTAGCATCAAGCAAAGA  750

seq1  CTCAAGTGAATATAAAACATAGGATGGGCGCCCCATACCAAAGTCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGAATATAAAACATAGGATGGGCGCCCCATACCAAAGTCACAAA  800

seq1  GTGAATTC  808
      ||||||||
seq2  GTGAATTC  808